Wall clock time and date at job start Tue Mar 31 2020 06:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46502 * 109.47252 * 2 1 4 4 C 1.46500 * 119.99779 * 270.00208 * 3 2 1 5 5 C 1.50700 * 109.47011 * 269.99337 * 4 3 2 6 6 H 1.07995 * 120.00090 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99990 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00139 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99998 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47219 * 60.00017 * 9 7 5 11 11 H 1.48492 * 109.47323 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46822 * 300.00131 * 9 7 5 13 13 C 1.34774 * 120.00012 * 89.99544 * 3 2 1 14 14 O 1.21289 * 119.99735 * 180.02562 * 13 3 2 15 15 C 1.50693 * 119.99942 * 0.02562 * 13 3 2 16 16 N 1.46509 * 109.47014 * 179.97438 * 15 13 3 17 17 C 1.34779 * 119.99795 * 180.02562 * 16 15 13 18 18 O 1.21578 * 120.00186 * 359.97438 * 17 16 15 19 19 N 1.34780 * 119.99572 * 179.97438 * 17 16 15 20 20 C 1.47024 * 125.64847 * 359.68614 * 19 17 16 21 21 C 1.54327 * 107.26851 * 181.32598 * 20 19 17 22 22 C 1.55154 * 102.94372 * 22.19158 * 21 20 19 23 23 C 1.47426 * 125.64645 * 179.97438 * 19 17 16 24 24 H 1.08999 * 109.47281 * 59.99947 * 1 2 3 25 25 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47744 * 300.00118 * 1 2 3 27 27 H 1.08995 * 109.47304 * 240.00043 * 2 1 3 28 28 H 1.08999 * 109.47281 * 120.00053 * 2 1 3 29 29 H 1.08997 * 109.47349 * 29.99517 * 4 3 2 30 30 H 1.09005 * 109.47202 * 150.00212 * 4 3 2 31 31 H 0.97002 * 120.00069 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47855 * 59.99748 * 15 13 3 33 33 H 1.08995 * 109.46982 * 299.99024 * 15 13 3 34 34 H 0.97004 * 119.99661 * 359.97438 * 16 15 13 35 35 H 1.08997 * 109.88062 * 300.74548 * 20 19 17 36 36 H 1.09000 * 109.88248 * 61.90735 * 20 19 17 37 37 H 1.09005 * 110.71834 * 263.82776 * 21 20 19 38 38 H 1.08999 * 110.71553 * 140.55738 * 21 20 19 39 39 H 1.09000 * 111.00849 * 206.42090 * 22 21 20 40 40 H 1.09001 * 111.00585 * 82.56882 * 22 21 20 41 41 H 1.09004 * 110.36499 * 274.44757 * 23 19 17 42 42 H 1.08998 * 110.36482 * 36.65820 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6857 1.8351 -1.7037 6 1 4.3426 1.2304 -1.0962 7 6 4.1490 2.3897 -2.8780 8 7 3.3490 3.1256 -3.6182 9 14 5.9131 2.0956 -3.4176 10 1 6.1403 0.6389 -3.5947 11 1 6.1606 2.7957 -4.7035 12 1 6.8409 2.6191 -2.3830 13 6 2.2428 2.0166 1.1672 14 8 2.6467 3.1603 1.1671 15 6 1.9921 1.3060 2.4722 16 7 2.3099 2.2035 3.5858 17 6 2.1610 1.7796 4.8565 18 8 1.7626 0.6526 5.0786 19 7 2.4539 2.6051 5.8809 20 6 2.9484 3.9840 5.7557 21 6 3.1731 4.5216 7.1848 22 6 3.3310 3.2254 8.0228 23 6 2.3370 2.2728 7.3124 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.5816 1.6877 -2.0284 30 1 2.0955 3.1411 -1.1384 31 1 3.6751 3.5161 -4.4441 32 1 2.6225 0.4187 2.5299 33 1 0.9443 1.0117 2.5301 34 1 2.6281 3.1026 3.4085 35 1 3.8886 3.9920 5.2045 36 1 2.2092 4.5976 5.2407 37 1 2.3095 5.0955 7.5211 38 1 4.0801 5.1243 7.2318 39 1 3.0389 3.3924 9.0596 40 1 4.3499 2.8429 7.9625 41 1 1.3208 2.4548 7.6624 42 1 2.6163 1.2334 7.4846 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900325340.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:36 Heat of formation + Delta-G solvation = -63.595152 kcal Electronic energy + Delta-G solvation = -22609.686313 eV Core-core repulsion = 19203.835499 eV Total energy + Delta-G solvation = -3405.850813 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.32758 -39.13616 -37.50651 -35.49057 -34.22187 -32.82274 -31.72224 -30.13884 -29.30136 -28.26735 -26.26538 -23.64926 -23.04490 -22.36416 -21.40051 -19.94506 -18.95927 -17.92686 -16.79417 -16.53201 -16.20470 -15.82430 -15.55553 -15.15148 -14.56029 -14.41045 -13.87380 -13.76911 -13.42055 -13.30202 -13.25468 -12.83054 -12.72055 -12.42217 -12.03187 -11.95757 -11.62939 -11.57286 -11.48416 -11.22905 -11.03973 -10.94605 -10.75277 -10.55646 -10.20614 -10.15163 -9.69777 -9.11925 -9.08858 -8.58017 -8.46218 -7.76524 -6.07449 -4.12447 2.53384 3.18002 3.28436 3.30601 3.34768 3.38689 3.74674 4.07690 4.32676 4.41598 4.42736 4.63673 4.92769 5.01632 5.12022 5.27227 5.31565 5.38830 5.44436 5.49358 5.57561 5.58030 5.62677 5.66105 5.71182 5.80842 5.87050 6.05538 6.13026 6.22776 6.44558 6.52767 6.98710 7.04432 7.38177 7.46445 7.88238 7.98820 8.19066 8.29448 8.61936 8.80604 8.96449 9.52608 11.00637 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.020079 B = 0.003769 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.159034 B = 7426.849757 C = 8289.074387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.590 5.590 4 C 0.247 3.753 5 C -0.529 4.529 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.899 3.101 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.500 3.500 14 O -0.542 6.542 15 C 0.118 3.882 16 N -0.728 5.728 17 C 0.725 3.275 18 O -0.595 6.595 19 N -0.639 5.639 20 C 0.095 3.905 21 C -0.129 4.129 22 C -0.135 4.135 23 C 0.125 3.875 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.035 0.965 30 H 0.044 0.956 31 H 0.264 0.736 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.408 0.592 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.232 -1.034 19.137 19.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.022 4.022 3 N -0.321 5.321 4 C 0.128 3.872 5 C -0.568 4.568 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.286 3.714 14 O -0.420 6.420 15 C -0.010 4.010 16 N -0.386 5.386 17 C 0.426 3.574 18 O -0.474 6.474 19 N -0.378 5.378 20 C -0.028 4.028 21 C -0.167 4.167 22 C -0.173 4.173 23 C 0.002 3.998 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.246 0.754 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.348 -1.206 18.977 19.308 hybrid contribution 1.114 0.269 -0.605 1.296 sum -2.235 -0.937 18.372 18.531 Atomic orbital electron populations 1.22216 0.96512 1.01705 1.02356 1.21509 0.93766 0.83826 1.03115 1.48213 1.62993 1.13428 1.07455 1.19312 0.96401 0.93643 0.77860 1.21393 0.96872 1.32114 1.06381 0.92453 1.24930 0.97893 0.94872 0.96333 1.69919 1.35747 1.33315 1.14354 0.86549 0.84697 0.78306 0.77814 1.20203 1.21161 1.20207 1.20188 0.78889 0.87037 0.85279 1.90649 1.46477 1.18037 1.86871 1.21047 1.02500 0.92985 0.84427 1.44823 1.71747 1.18765 1.03312 1.15301 0.78673 0.83526 0.79853 1.90903 1.53939 1.18607 1.83924 1.47520 1.70578 1.14101 1.05620 1.22051 0.99635 0.82794 0.98338 1.22603 1.02871 0.97512 0.93721 1.22813 1.00055 0.95217 0.99198 1.22053 0.99013 0.99960 0.78773 0.91978 0.91916 0.92983 0.89584 0.91384 0.94749 0.93801 0.92622 0.89093 0.89123 0.75443 0.91285 0.91316 0.90459 0.89883 0.89738 0.90514 0.91746 0.90376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.24 37.15 0.38 -1.92 16 2 C 0.10 1.63 5.93 -4.05 -0.02 1.60 16 3 N -0.59 -12.21 2.46 -175.07 -0.43 -12.63 16 4 C 0.25 6.32 5.16 -5.19 -0.03 6.29 16 5 C -0.53 -14.80 9.39 -34.44 -0.32 -15.12 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 9 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.50 10.20 7.74 -10.99 -0.09 10.11 16 14 O -0.54 -12.94 15.25 5.55 0.08 -12.86 16 15 C 0.12 1.95 4.71 -5.19 -0.02 1.93 16 16 N -0.73 -11.67 5.49 -66.41 -0.36 -12.03 16 17 C 0.72 11.60 8.49 -86.91 -0.74 10.86 16 18 O -0.59 -11.22 16.59 5.30 0.09 -11.13 16 19 N -0.64 -7.99 3.33 -176.22 -0.59 -8.58 16 20 C 0.10 0.92 6.15 -3.06 -0.02 0.90 16 21 C -0.13 -0.87 6.95 -24.90 -0.17 -1.04 16 22 C -0.13 -0.91 7.09 -24.57 -0.17 -1.08 16 23 C 0.13 1.23 6.91 -2.52 -0.02 1.21 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.69 7.22 -51.93 -0.38 0.31 16 27 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 28 H 0.07 0.94 6.44 -51.93 -0.33 0.60 16 29 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 30 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.09 1.44 7.40 -51.93 -0.38 1.06 16 33 H 0.09 1.38 7.19 -51.93 -0.37 1.01 16 34 H 0.41 6.48 6.42 -40.82 -0.26 6.22 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.84 8.03 -51.93 -0.42 0.42 16 LS Contribution 347.13 15.07 5.23 5.23 Total: -1.00 -34.21 347.13 -8.30 -42.51 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -6.72 Total: 2.98 kcal Atomic # 6 Polarization: 16.72 SS G_CDS: -1.32 Total: 15.40 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: -0.64 Total: -58.80 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: 0.17 Total: -23.99 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.21 -8.30 -42.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900325340.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.085 kcal (2) G-P(sol) polarization free energy of solvation -34.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds