Wall clock time and date at job start Tue Mar 31 2020 06:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33112 * 120.00037 * 2 1 4 4 F 1.35102 * 119.99934 * 352.75678 * 3 2 1 5 5 C 1.47300 * 119.99943 * 172.76318 * 3 2 1 6 6 O 1.21604 * 120.00010 * 352.56003 * 5 3 2 7 7 N 1.34782 * 119.99677 * 172.28658 * 5 3 2 8 8 C 1.46497 * 119.99482 * 180.02562 * 7 5 3 9 9 C 1.53003 * 109.47127 * 179.97438 * 8 7 5 10 10 C 1.53005 * 109.46979 * 300.00032 * 9 8 7 11 11 C 1.53000 * 109.46981 * 59.99488 * 9 8 7 12 12 C 1.52995 * 109.47594 * 179.97438 * 9 8 7 13 13 C 1.50693 * 109.47399 * 180.02562 * 12 9 8 14 14 H 1.08002 * 120.00174 * 359.97438 * 13 12 9 15 15 C 1.37878 * 120.00460 * 180.02562 * 13 12 9 16 16 N 1.31516 * 119.99622 * 359.97438 * 15 13 12 17 17 Si 1.86791 * 120.00389 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47312 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.47047 * 120.00010 * 17 15 13 20 20 H 1.48500 * 109.47579 * 239.99906 * 17 15 13 21 21 C 1.50696 * 119.99933 * 179.97438 * 2 1 3 22 22 C 1.53003 * 117.49973 * 359.86932 * 21 2 1 23 23 C 1.53001 * 60.00133 * 252.50813 * 22 21 2 24 24 H 1.08992 * 109.46905 * 90.00174 * 1 2 3 25 25 H 1.09000 * 109.46667 * 210.00512 * 1 2 3 26 26 H 1.09000 * 109.47080 * 330.00158 * 1 2 3 27 27 H 0.96996 * 120.00206 * 359.97438 * 7 5 3 28 28 H 1.09003 * 109.47166 * 299.99106 * 8 7 5 29 29 H 1.08995 * 109.47735 * 59.99946 * 8 7 5 30 30 H 1.08996 * 109.47101 * 59.99448 * 10 9 8 31 31 H 1.09004 * 109.46901 * 179.97438 * 10 9 8 32 32 H 1.09000 * 109.46574 * 299.99643 * 10 9 8 33 33 H 1.08994 * 109.47196 * 60.00552 * 11 9 8 34 34 H 1.09001 * 109.47468 * 180.02562 * 11 9 8 35 35 H 1.08996 * 109.47471 * 300.00137 * 11 9 8 36 36 H 1.08999 * 109.47090 * 300.00290 * 12 9 8 37 37 H 1.09006 * 109.46820 * 59.99892 * 12 9 8 38 38 H 0.96997 * 119.99927 * 179.97438 * 16 15 13 39 39 H 1.08999 * 115.55481 * 145.58052 * 21 2 1 40 40 H 1.08997 * 117.49853 * 0.02562 * 22 21 2 41 41 H 1.08997 * 117.49882 * 145.01965 * 22 21 2 42 42 H 1.08993 * 117.50443 * 252.50811 * 23 22 21 43 43 H 1.09004 * 117.49839 * 107.48688 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1726 1.1528 0.0000 4 9 1.5052 2.3181 -0.1475 5 6 3.6368 1.1578 0.1607 6 8 4.2227 0.1263 0.4281 7 7 4.3277 2.3047 0.0059 8 6 5.7840 2.3096 0.1652 9 6 6.3171 3.7256 -0.0618 10 6 5.9572 4.1855 -1.4760 11 6 5.6891 4.6767 0.9590 12 6 7.8379 3.7310 0.1052 13 6 8.3629 5.1258 -0.1177 14 1 7.6802 5.9283 -0.3552 15 6 9.7150 5.3775 -0.0196 16 7 10.5465 4.4003 0.2691 17 14 10.3658 7.1063 -0.2966 18 1 9.2345 8.0177 -0.6044 19 1 11.0600 7.5763 0.9292 20 1 11.3203 7.0997 -1.4342 21 6 2.2605 -1.3051 0.0006 22 6 1.4384 -2.5955 0.0043 23 6 2.1878 -2.1623 1.2659 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 3.8608 3.1266 -0.2116 28 1 6.0404 1.9816 1.1726 29 1 6.2314 1.6324 -0.5623 30 1 4.8737 4.1818 -1.5945 31 1 6.3366 5.1945 -1.6375 32 1 6.4046 3.5079 -2.2032 33 1 5.9455 4.3492 1.9665 34 1 6.0686 5.6856 0.7971 35 1 4.6057 4.6731 0.8405 36 1 8.0940 3.4035 1.1128 37 1 8.2856 3.0533 -0.6218 38 1 11.4977 4.5772 0.3378 39 1 3.1981 -1.3069 -0.5553 40 1 0.3526 -2.5004 0.0058 41 1 1.8350 -3.4464 -0.5495 42 1 3.0774 -2.7282 1.5422 43 1 1.5950 -1.7822 2.0979 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908213480.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:47 Heat of formation + Delta-G solvation = -61.735777 kcal Electronic energy + Delta-G solvation = -22548.992351 eV Core-core repulsion = 19123.302205 eV Total energy + Delta-G solvation = -3425.690146 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.98588 -39.84944 -38.12615 -36.96050 -33.65235 -33.09230 -32.09693 -28.59782 -27.10947 -26.51794 -26.19089 -23.66829 -22.68741 -22.43562 -20.90498 -19.39441 -18.24858 -17.49396 -16.86728 -16.32700 -16.06766 -15.46185 -14.74272 -14.67930 -14.54498 -14.43202 -14.07146 -13.49823 -13.40501 -13.12351 -12.84356 -12.73051 -12.53512 -12.19062 -12.07246 -11.76790 -11.49685 -11.17830 -11.03391 -10.98810 -10.84122 -10.70446 -10.65132 -10.42510 -10.24987 -9.89715 -9.65268 -9.19194 -8.99913 -8.92709 -8.64911 -8.37115 -6.01072 -4.02210 0.97791 3.07989 3.18652 3.29689 3.37937 3.40555 3.75638 4.11144 4.43987 4.49930 4.57669 4.80451 4.92842 4.93936 5.21888 5.24279 5.34642 5.43347 5.46279 5.59749 5.60707 5.71274 5.73700 5.81322 5.96815 6.09368 6.16377 6.19294 6.21124 6.35998 6.37242 6.50612 6.62540 6.72402 7.04612 7.06114 7.10690 7.61633 7.64260 7.74542 7.97724 8.22100 8.39888 9.02739 9.61077 11.10470 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.035406 B = 0.003254 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.633424 B = 8603.715018 C = 9132.187777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.051 4.051 3 C -0.013 4.013 4 F -0.138 7.138 5 C 0.539 3.461 6 O -0.519 6.519 7 N -0.711 5.711 8 C 0.128 3.872 9 C -0.073 4.073 10 C -0.128 4.128 11 C -0.128 4.128 12 C 0.036 3.964 13 C -0.511 4.511 14 H 0.060 0.940 15 C 0.056 3.944 16 N -0.895 5.895 17 Si 0.889 3.111 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.107 4.107 22 C -0.186 4.186 23 C -0.153 4.153 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.402 0.598 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.029 0.971 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.029 0.971 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.259 0.741 39 H 0.134 0.866 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.165 -9.202 -0.765 22.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.054 4.054 3 C -0.035 4.035 4 F -0.117 7.117 5 C 0.325 3.675 6 O -0.398 6.398 7 N -0.362 5.362 8 C 0.005 3.995 9 C -0.074 4.074 10 C -0.185 4.185 11 C -0.185 4.185 12 C -0.001 4.001 13 C -0.549 4.549 14 H 0.078 0.922 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.124 4.124 22 C -0.223 4.223 23 C -0.190 4.190 24 H 0.100 0.900 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.238 0.762 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.069 0.931 39 H 0.152 0.848 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.543 -9.894 -0.546 21.911 hybrid contribution 0.193 1.652 -0.245 1.681 sum -19.350 -8.242 -0.791 21.047 Atomic orbital electron populations 1.20907 0.90304 1.03595 1.03302 1.21850 0.96118 0.92766 0.94662 1.19493 0.90377 0.81699 1.11909 1.91458 1.80117 1.46625 1.93457 1.18193 0.85952 0.84667 0.78734 1.90803 1.69357 1.31353 1.48294 1.46156 1.09531 1.10553 1.69950 1.21703 0.77025 0.99031 1.01695 1.20924 1.00135 0.91115 0.95199 1.21772 0.97919 1.02701 0.96135 1.21771 0.97182 1.01002 0.98583 1.19090 0.86095 0.97525 0.97390 1.21221 0.91964 0.94418 1.47280 0.92180 1.25014 0.97248 0.96738 0.95518 1.69974 1.03012 1.31352 1.49062 0.86590 0.78986 0.84996 0.77738 1.19788 1.21130 1.21126 1.21119 1.00392 0.87012 1.03920 1.23155 0.98851 0.98046 1.02253 1.22845 1.02595 1.02287 0.91287 0.90025 0.90354 0.90773 0.76174 0.91484 0.91484 0.95221 0.91329 0.93311 0.93314 0.91330 0.95217 0.96306 0.96310 0.93089 0.84834 0.88588 0.88407 0.88187 0.88992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 9.28 36.01 0.33 -0.66 16 2 C -0.05 -0.56 5.81 -101.13 -0.59 -1.15 16 3 C -0.01 -0.16 7.34 -37.68 -0.28 -0.44 16 4 F -0.14 -1.72 15.93 2.25 0.04 -1.69 16 5 C 0.54 8.27 7.66 -12.57 -0.10 8.18 16 6 O -0.52 -9.05 13.42 5.27 0.07 -8.98 16 7 N -0.71 -10.83 4.95 -61.43 -0.30 -11.14 16 8 C 0.13 2.25 4.56 -4.04 -0.02 2.24 16 9 C -0.07 -1.40 0.54 -154.51 -0.08 -1.48 16 10 C -0.13 -2.27 8.05 37.16 0.30 -1.97 16 11 C -0.13 -2.29 8.05 37.16 0.30 -1.99 16 12 C 0.04 0.89 4.04 -27.89 -0.11 0.78 16 13 C -0.51 -13.53 7.65 -34.44 -0.26 -13.79 16 14 H 0.06 1.54 5.68 -52.49 -0.30 1.24 16 15 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 16 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 17 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 C -0.11 -1.20 4.25 -91.77 -0.39 -1.59 16 22 C -0.19 -1.56 9.80 -26.73 -0.26 -1.83 16 23 C -0.15 -1.53 10.23 -26.73 -0.27 -1.80 16 24 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.08 0.51 6.29 -51.93 -0.33 0.18 16 26 H 0.07 0.59 7.66 -51.93 -0.40 0.19 16 27 H 0.40 5.57 5.73 -40.82 -0.23 5.34 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 31 H 0.07 1.31 6.62 -51.93 -0.34 0.96 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 1.31 6.62 -51.93 -0.34 0.97 16 35 H 0.03 0.44 6.86 -51.93 -0.36 0.09 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.13 1.79 6.42 -51.93 -0.33 1.45 16 40 H 0.10 0.66 6.26 -51.93 -0.33 0.33 16 41 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 345.91 15.07 5.21 5.21 Total: -1.00 -29.42 345.91 -7.48 -36.89 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -6.68 Total: 3.19 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -1.53 Total: -14.06 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.43 Total: -36.74 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.07 Total: -8.98 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.42 -7.48 -36.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908213480.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.845 kcal (2) G-P(sol) polarization free energy of solvation -29.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds