Wall clock time and date at job start Tue Mar 31 2020 05:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34221 * 116.99836 * 2 1 4 4 O 1.20823 * 120.00460 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99738 * 179.97438 * 3 2 1 6 6 H 1.09007 * 115.57291 * 60.76851 * 5 3 2 7 7 C 1.53063 * 117.50812 * 206.50185 * 5 3 2 8 8 C 1.52735 * 59.94100 * 107.47092 * 7 5 3 9 9 C 1.53232 * 117.83065 * 252.26766 * 8 7 5 10 10 C 1.53259 * 108.62606 * 163.02249 * 9 8 7 11 11 N 1.46807 * 109.44732 * 55.57030 * 10 9 8 12 12 C 1.46900 * 111.00010 * 170.80543 * 11 10 9 13 13 C 1.53004 * 109.47253 * 75.49868 * 12 11 10 14 14 H 1.08995 * 109.46753 * 53.91378 * 13 12 11 15 15 O 1.42900 * 109.47016 * 293.91493 * 13 12 11 16 16 C 1.50698 * 109.46980 * 173.91538 * 13 12 11 17 17 H 1.08000 * 120.00317 * 0.02562 * 16 13 12 18 18 C 1.37880 * 119.99986 * 179.97438 * 16 13 12 19 19 N 1.31511 * 120.00014 * 179.97438 * 18 16 13 20 20 Si 1.86804 * 119.99844 * 0.02562 * 18 16 13 21 21 H 1.48496 * 109.47161 * 269.99563 * 20 18 16 22 22 H 1.48503 * 109.47138 * 149.99188 * 20 18 16 23 23 H 1.48500 * 109.47014 * 29.99557 * 20 18 16 24 24 C 1.46819 * 111.58691 * 295.17934 * 11 10 9 25 25 C 1.53212 * 117.84706 * 107.74993 * 8 7 5 26 26 H 1.09003 * 109.47070 * 59.99895 * 1 2 3 27 27 H 1.08997 * 109.47082 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47051 * 300.00102 * 1 2 3 29 29 H 1.08996 * 117.50077 * 359.97438 * 7 5 3 30 30 H 1.09001 * 117.50540 * 214.94165 * 7 5 3 31 31 H 1.09001 * 109.60976 * 43.28871 * 9 8 7 32 32 H 1.08994 * 109.61351 * 282.76815 * 9 8 7 33 33 H 1.09000 * 109.47197 * 295.57576 * 10 9 8 34 34 H 1.08992 * 109.47671 * 175.56816 * 10 9 8 35 35 H 1.09002 * 109.46940 * 315.50319 * 12 11 10 36 36 H 1.08999 * 109.47605 * 195.50132 * 12 11 10 37 37 H 0.96694 * 114.00362 * 299.99777 * 15 13 12 38 38 H 0.97009 * 119.99805 * 179.97438 * 19 18 16 39 39 H 1.08995 * 109.47751 * 184.81071 * 24 11 10 40 40 H 1.08993 * 109.47390 * 304.82857 * 24 11 10 41 41 H 1.08997 * 109.60584 * 316.71219 * 25 8 7 42 42 H 1.08992 * 109.61476 * 77.22831 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0617 0.8197 -0.8572 7 6 4.2085 2.5252 0.6064 8 6 4.2766 1.1931 1.3505 9 6 3.4110 1.0289 2.6042 10 6 3.3017 -0.4643 2.9315 11 7 4.6475 -1.0340 3.0704 12 6 4.5873 -2.4046 3.5956 13 6 4.1306 -3.3558 2.4876 14 1 4.7756 -3.2358 1.6172 15 8 2.7816 -3.0533 2.1263 16 6 4.2119 -4.7774 2.9809 17 1 4.5545 -4.9821 3.9845 18 6 3.8477 -5.8169 2.1514 19 7 3.9191 -7.0575 2.5818 20 14 3.2544 -5.4629 0.4159 21 1 1.7806 -5.2814 0.4239 22 1 3.6082 -6.6010 -0.4700 23 1 3.9028 -4.2248 -0.0861 24 6 5.3869 -0.9884 1.8029 25 6 5.6273 0.4719 1.4048 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.5423 3.2907 1.0040 30 1 5.1261 2.8926 0.1470 31 1 2.4172 1.4364 2.4185 32 1 3.8740 1.5537 3.4398 33 1 2.7722 -0.9748 2.1270 34 1 2.7545 -0.5926 3.8653 35 1 3.8800 -2.4456 4.4240 36 1 5.5753 -2.7031 3.9464 37 1 2.1507 -3.1393 2.8540 38 1 3.6625 -7.7888 1.9983 39 1 6.3447 -1.4948 1.9224 40 1 4.8070 -1.4862 1.0258 41 1 6.1021 0.5103 0.4244 42 1 6.2689 0.9517 2.1437 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929645397.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:14 Heat of formation + Delta-G solvation = -106.136224 kcal Electronic energy + Delta-G solvation = -24146.149980 eV Core-core repulsion = 20706.161696 eV Total energy + Delta-G solvation = -3439.988284 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 2.73 seconds Orbital eigenvalues (eV) -40.85142 -39.18209 -37.32797 -36.26837 -34.75191 -32.30432 -30.87387 -30.55941 -28.20837 -27.65700 -24.84370 -24.03177 -23.18497 -21.80448 -20.74347 -20.17844 -18.58991 -17.49158 -17.38245 -16.67726 -16.27900 -15.28163 -15.00061 -14.86318 -14.53392 -14.45287 -14.02908 -13.77223 -13.51861 -13.09460 -12.95027 -12.76671 -12.39417 -12.27611 -12.01389 -11.91754 -11.62522 -11.46890 -11.03701 -10.89317 -10.75689 -10.75101 -10.68353 -10.45099 -10.21786 -10.00368 -9.91882 -9.70876 -9.48255 -8.77470 -8.68104 -7.34820 -6.15972 -4.27427 2.12794 2.66728 3.41175 3.44890 3.57005 3.57740 4.42298 4.46750 4.50103 4.57540 4.68419 4.88854 5.00954 5.11798 5.13549 5.17179 5.39164 5.45195 5.52544 5.58027 5.63389 5.71360 5.77408 5.84146 5.85767 5.97529 5.98362 6.08663 6.18699 6.26763 6.27783 6.39286 6.43891 6.67327 6.75799 7.20859 7.40000 7.65947 7.73889 7.76126 8.24525 8.78256 8.94732 9.47850 10.94350 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.018575 B = 0.006226 C = 0.005275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.071310 B = 4496.032592 C = 5306.849526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.341 6.341 3 C 0.497 3.503 4 O -0.516 6.516 5 C -0.166 4.166 6 H 0.136 0.864 7 C -0.142 4.142 8 C -0.082 4.082 9 C -0.083 4.083 10 C 0.046 3.954 11 N -0.538 5.538 12 C 0.039 3.961 13 C 0.158 3.842 14 H 0.064 0.936 15 O -0.581 6.581 16 C -0.560 4.560 17 H 0.073 0.927 18 C 0.081 3.919 19 N -0.893 5.893 20 Si 0.916 3.084 21 H -0.280 1.280 22 H -0.307 1.307 23 H -0.269 1.269 24 C 0.052 3.948 25 C -0.077 4.077 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.358 0.642 38 H 0.265 0.735 39 H 0.073 0.927 40 H 0.047 0.953 41 H 0.067 0.933 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.267 16.930 -3.774 17.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.256 6.256 3 C 0.341 3.659 4 O -0.405 6.405 5 C -0.185 4.185 6 H 0.154 0.846 7 C -0.179 4.179 8 C -0.082 4.082 9 C -0.120 4.120 10 C -0.082 4.082 11 N -0.261 5.261 12 C -0.089 4.089 13 C 0.100 3.900 14 H 0.082 0.918 15 O -0.387 6.387 16 C -0.598 4.598 17 H 0.092 0.908 18 C -0.123 4.123 19 N -0.530 5.530 20 Si 0.746 3.254 21 H -0.206 1.206 22 H -0.236 1.236 23 H -0.194 1.194 24 C -0.076 4.076 25 C -0.115 4.115 26 H 0.078 0.922 27 H 0.122 0.878 28 H 0.080 0.920 29 H 0.122 0.878 30 H 0.126 0.874 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.205 0.795 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.987 17.429 -4.043 17.919 hybrid contribution -1.236 -0.664 -1.009 1.728 sum -2.223 16.765 -5.051 17.650 Atomic orbital electron populations 1.23280 0.76446 1.03988 1.02038 1.86636 1.23138 1.32573 1.83251 1.22623 0.90503 0.81373 0.71390 1.90632 1.67004 1.36651 1.46181 1.21939 0.88161 1.06911 1.01464 0.84588 1.23167 1.01931 0.90900 1.01897 1.21683 0.97452 0.98439 0.90673 1.21314 0.97357 0.98021 0.95354 1.22253 0.90976 0.93017 1.01934 1.62107 1.16079 1.21151 1.26801 1.22794 1.02006 0.85957 0.98136 1.20602 0.80950 0.93922 0.94513 0.91848 1.86397 1.19778 1.91269 1.41302 1.21540 1.46756 0.89541 1.01966 0.90847 1.25047 0.93533 0.94661 0.99088 1.69969 1.46933 0.98942 1.37194 0.86214 0.79638 0.76396 0.83135 1.20576 1.23566 1.19420 1.22070 0.98752 0.95013 0.91747 1.21286 0.93269 0.95637 1.01309 0.92234 0.87826 0.91990 0.87771 0.87408 0.92549 0.90520 0.90845 0.91677 0.91528 0.90620 0.79547 0.92586 0.90821 0.93502 0.91482 0.90302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.50 16 2 O -0.34 -5.17 10.42 -39.24 -0.41 -5.58 16 3 C 0.50 7.33 5.97 36.00 0.21 7.54 16 4 O -0.52 -8.36 16.34 -18.75 -0.31 -8.67 16 5 C -0.17 -2.10 5.98 -91.86 -0.55 -2.65 16 6 H 0.14 1.56 8.14 -51.93 -0.42 1.13 16 7 C -0.14 -1.51 9.51 -26.83 -0.26 -1.77 16 8 C -0.08 -1.02 2.02 -154.54 -0.31 -1.33 16 9 C -0.08 -1.10 5.52 -26.48 -0.15 -1.25 16 10 C 0.05 0.71 4.88 -3.74 -0.02 0.69 16 11 N -0.54 -8.81 4.78 -234.45 -1.12 -9.93 16 12 C 0.04 0.73 5.17 -3.82 -0.02 0.71 16 13 C 0.16 3.52 1.82 -27.88 -0.05 3.47 16 14 H 0.06 1.50 5.20 -51.93 -0.27 1.23 16 15 O -0.58 -12.46 8.30 -35.23 -0.29 -12.75 16 16 C -0.56 -15.12 9.34 -34.44 -0.32 -15.44 16 17 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 18 C 0.08 2.30 5.47 -17.82 -0.10 2.21 16 19 N -0.89 -26.89 13.96 55.43 0.77 -26.12 16 20 Si 0.92 23.06 26.18 -169.99 -4.45 18.61 16 21 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.31 -7.75 7.11 56.52 0.40 -7.35 16 23 H -0.27 -6.71 6.54 56.52 0.37 -6.34 16 24 C 0.05 0.82 4.41 -3.73 -0.02 0.80 16 25 C -0.08 -0.94 5.87 -26.49 -0.16 -1.10 16 26 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 27 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 29 H 0.10 1.16 7.92 -51.93 -0.41 0.75 16 30 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.77 6.85 -51.93 -0.36 0.41 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 1.29 5.82 -51.93 -0.30 0.99 16 34 H 0.06 0.97 7.88 -51.93 -0.41 0.56 16 35 H 0.07 1.23 7.83 -51.93 -0.41 0.83 16 36 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 37 H 0.36 6.91 9.04 45.56 0.41 7.32 16 38 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.07 1.13 8.09 -51.93 -0.42 0.71 16 40 H 0.05 0.85 6.65 -51.93 -0.35 0.50 16 41 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 42 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 332.02 15.07 5.00 5.00 Total: -1.00 -31.72 332.02 -7.36 -39.08 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.89 Total: 6.97 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -0.66 Total: -6.61 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: -0.35 Total: -36.05 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -1.01 Total: -27.00 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -4.45 Total: 18.61 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.72 -7.36 -39.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929645397.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.058 kcal (2) G-P(sol) polarization free energy of solvation -31.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.73 seconds