Wall clock time and date at job start Tue Mar 31 2020 06:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47131 * 2 1 4 4 H 1.09006 * 109.47068 * 304.33800 * 3 2 1 5 5 C 1.50702 * 109.47403 * 184.33610 * 3 2 1 6 6 H 1.08003 * 119.99771 * 240.00738 * 5 3 2 7 7 C 1.37871 * 119.99836 * 59.99707 * 5 3 2 8 8 N 1.31516 * 120.00255 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99923 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47318 * 59.99735 * 9 7 5 11 11 H 1.48500 * 109.46978 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47066 * 300.00219 * 9 7 5 13 13 N 1.46899 * 109.47258 * 64.33302 * 3 2 1 14 14 C 1.46895 * 111.00415 * 205.79928 * 13 3 2 15 15 C 1.50699 * 109.47503 * 174.88413 * 14 13 3 16 16 N 1.31132 * 126.54777 * 89.99869 * 15 14 13 17 17 C 1.34499 * 105.61371 * 180.02562 * 16 15 14 18 18 C 1.50703 * 126.28892 * 179.97438 * 17 16 15 19 19 O 1.42892 * 109.47202 * 89.99681 * 18 17 16 20 20 C 1.42903 * 113.99978 * 179.97438 * 19 18 17 21 21 C 1.53002 * 109.46845 * 90.00151 * 20 19 18 22 22 C 1.52997 * 109.47069 * 210.00470 * 20 19 18 23 23 N 1.29951 * 107.42386 * 0.02562 * 17 16 15 24 24 O 1.21301 * 110.25063 * 359.70469 * 23 17 16 25 25 H 1.08998 * 109.46890 * 54.10009 * 1 2 3 26 26 H 1.08996 * 109.47169 * 174.10097 * 1 2 3 27 27 H 1.09001 * 109.47270 * 294.09836 * 1 2 3 28 28 H 1.08999 * 109.47132 * 240.00332 * 2 1 3 29 29 H 1.09003 * 109.47008 * 119.99889 * 2 1 3 30 30 H 0.96998 * 119.99861 * 180.02562 * 8 7 5 31 31 H 1.00906 * 111.00050 * 81.84362 * 13 3 2 32 32 H 1.09000 * 109.47394 * 294.88629 * 14 13 3 33 33 H 1.08997 * 109.46867 * 54.88605 * 14 13 3 34 34 H 1.09001 * 109.46823 * 210.00442 * 18 17 16 35 35 H 1.09000 * 109.46828 * 329.99650 * 18 17 16 36 36 H 1.09002 * 109.46973 * 330.00539 * 20 19 18 37 37 H 1.09002 * 109.47018 * 60.00415 * 21 20 19 38 38 H 1.09003 * 109.46907 * 179.97438 * 21 20 19 39 39 H 1.08996 * 109.47247 * 300.00227 * 21 20 19 40 40 H 1.08995 * 109.47925 * 60.00178 * 22 20 19 41 41 H 1.09003 * 109.47196 * 180.02562 * 22 20 19 42 42 H 1.09002 * 109.47279 * 299.99882 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6146 1.9783 -0.8486 5 6 3.5432 1.4439 -0.1074 6 1 4.1399 1.8914 0.6737 7 6 4.1565 0.8738 -1.2027 8 7 3.4298 0.3291 -2.1539 9 14 6.0198 0.8749 -1.3355 10 1 6.5990 0.1447 -0.1794 11 1 6.4265 0.2067 -2.5978 12 1 6.5153 2.2748 -1.3351 13 7 1.6377 2.1041 1.2483 14 6 1.5424 3.5586 1.0663 15 6 1.0081 4.1888 2.3266 16 7 1.7145 4.6250 3.3416 17 6 0.8205 5.0998 4.2274 18 6 1.1327 5.7139 5.5677 19 8 1.3077 7.1240 5.4165 20 6 1.6086 7.8064 6.6355 21 6 3.1250 7.8498 6.8346 22 6 1.0617 9.2337 6.5693 23 7 -0.3619 4.9306 3.7155 24 8 -0.2758 4.4138 2.6215 25 1 -0.3633 0.6026 -0.8324 26 1 -0.3633 -1.0222 -0.1056 27 1 -0.3634 0.4196 0.9381 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8614 -0.0724 -2.9243 31 1 2.2708 1.8745 1.9997 32 1 2.5309 3.9632 0.8486 33 1 0.8696 3.7777 0.2372 34 1 0.3097 5.5215 6.2560 35 1 2.0481 5.2746 5.9642 36 1 1.1475 7.2789 7.4705 37 1 3.5861 8.3773 5.9995 38 1 3.3545 8.3707 7.7642 39 1 3.5145 6.8330 6.8817 40 1 -0.0186 9.2028 6.4274 41 1 1.2916 9.7544 7.4989 42 1 1.5228 9.7612 5.7342 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930694380.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:02 Heat of formation + Delta-G solvation = 10.471802 kcal Electronic energy + Delta-G solvation = -22058.798213 eV Core-core repulsion = 18656.159184 eV Total energy + Delta-G solvation = -3402.639029 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.36642 -38.75670 -36.61272 -35.65172 -33.72141 -32.83623 -31.84304 -30.82075 -27.95217 -27.40734 -27.21106 -25.13340 -23.28138 -22.53320 -21.65463 -21.14497 -19.64965 -17.97449 -17.45635 -16.95927 -16.71050 -15.76433 -15.42867 -14.93890 -14.73779 -14.20813 -13.93734 -13.77194 -13.36377 -13.03235 -12.79658 -12.54692 -12.47730 -12.18359 -11.98237 -11.93211 -11.73514 -11.51553 -11.30759 -11.20480 -11.02274 -10.95724 -10.85063 -10.72233 -10.27487 -9.93834 -9.92622 -9.68420 -9.56271 -9.20242 -8.45924 -7.56208 -6.08503 -4.21799 1.31759 2.21734 3.08504 3.25833 3.31151 3.31475 3.34210 3.97020 4.14655 4.34576 4.58245 4.69897 4.84418 4.91113 5.00356 5.17240 5.28554 5.33954 5.37579 5.43722 5.50293 5.52757 5.69557 5.85720 5.92084 5.93730 6.09899 6.17512 6.35426 6.45741 6.65105 6.86763 6.98769 7.11811 7.27697 7.45893 7.69161 7.88142 7.98038 8.13540 8.34377 8.44067 8.87347 9.46780 10.92461 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.020198 B = 0.003365 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.964073 B = 8319.594145 C = 9404.890283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.218 3.782 4 H 0.039 0.961 5 C -0.554 4.554 6 H 0.056 0.944 7 C 0.071 3.929 8 N -0.883 5.883 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.682 5.682 14 C 0.150 3.850 15 C 0.213 3.787 16 N -0.477 5.477 17 C 0.162 3.838 18 C 0.161 3.839 19 O -0.376 6.376 20 C 0.082 3.918 21 C -0.177 4.177 22 C -0.150 4.150 23 N -0.376 5.376 24 O 0.086 5.914 25 H 0.039 0.961 26 H 0.026 0.974 27 H 0.046 0.954 28 H 0.094 0.906 29 H 0.032 0.968 30 H 0.264 0.736 31 H 0.337 0.663 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.259 11.428 14.219 18.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.145 4.145 3 C 0.111 3.889 4 H 0.057 0.943 5 C -0.592 4.592 6 H 0.075 0.925 7 C -0.133 4.133 8 N -0.521 5.521 9 Si 0.719 3.281 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.315 5.315 14 C 0.019 3.981 15 C -0.008 4.008 16 N -0.212 5.212 17 C -0.111 4.111 18 C 0.083 3.917 19 O -0.294 6.294 20 C 0.025 3.975 21 C -0.234 4.234 22 C -0.207 4.207 23 N -0.084 5.084 24 O 0.026 5.974 25 H 0.058 0.942 26 H 0.045 0.955 27 H 0.065 0.935 28 H 0.112 0.888 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.154 0.846 32 H 0.100 0.900 33 H 0.120 0.880 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.294 11.672 14.412 19.286 hybrid contribution 2.103 -0.024 -0.069 2.105 sum -3.190 11.647 14.343 18.750 Atomic orbital electron populations 1.21708 0.98793 0.98552 1.00480 1.21509 0.92230 0.98720 1.01996 1.19231 0.93146 0.91358 0.85138 0.94312 1.21801 0.92359 1.38917 1.06172 0.92548 1.24906 0.98156 0.94705 0.95508 1.69857 1.35159 1.37573 1.09480 0.86676 0.85739 0.78318 0.77405 1.20222 1.21213 1.20259 1.60966 1.56280 1.02948 1.11258 1.20419 1.00419 0.91092 0.86184 1.29318 0.79304 0.94001 0.98180 1.71917 1.31548 1.16135 1.01584 1.25220 0.84870 1.01477 0.99565 1.20317 1.01534 0.81858 0.87982 1.87993 1.91547 1.17792 1.32102 1.22134 0.95222 0.93749 0.86423 1.22319 0.95917 1.02768 1.02432 1.21865 1.01771 0.94459 1.02609 1.74585 1.23315 1.14997 0.95553 1.85304 1.30719 1.55825 1.25597 0.94201 0.95506 0.93514 0.88817 0.94904 0.92644 0.84565 0.89980 0.87994 0.90597 0.90023 0.91907 0.91535 0.91521 0.92161 0.91908 0.91051 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.72 37.16 0.36 -2.34 16 2 C -0.11 -2.40 5.45 -26.73 -0.15 -2.54 16 3 C 0.22 4.99 1.98 -68.86 -0.14 4.86 16 4 H 0.04 0.96 7.71 -51.93 -0.40 0.56 16 5 C -0.55 -14.04 8.47 -34.44 -0.29 -14.33 16 6 H 0.06 1.43 7.73 -52.48 -0.41 1.02 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -23.80 11.30 55.43 0.63 -23.17 16 9 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 N -0.68 -13.34 5.74 -109.22 -0.63 -13.96 16 14 C 0.15 2.60 6.13 -4.98 -0.03 2.57 16 15 C 0.21 3.62 8.07 -13.06 -0.11 3.52 16 16 N -0.48 -8.36 11.55 -9.86 -0.11 -8.48 16 17 C 0.16 2.61 7.85 -156.36 -1.23 1.38 16 18 C 0.16 1.99 6.37 36.01 0.23 2.22 16 19 O -0.38 -4.84 9.97 -35.23 -0.35 -5.19 16 20 C 0.08 0.74 3.34 -26.73 -0.09 0.65 16 21 C -0.18 -1.44 9.53 37.16 0.35 -1.09 16 22 C -0.15 -1.16 9.56 37.16 0.36 -0.81 16 23 N -0.38 -6.38 12.16 30.90 0.38 -6.01 16 24 O 0.09 1.47 11.31 18.10 0.20 1.67 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.88 7.90 -51.93 -0.41 0.47 16 28 H 0.09 2.38 5.97 -51.93 -0.31 2.07 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.34 6.72 8.45 -39.29 -0.33 6.39 16 32 H 0.08 1.47 8.11 -51.93 -0.42 1.05 16 33 H 0.10 1.62 7.93 -51.93 -0.41 1.21 16 34 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 35 H 0.08 0.89 7.87 -51.93 -0.41 0.48 16 36 H 0.06 0.46 7.79 -51.93 -0.40 0.06 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.50 7.87 -51.93 -0.41 0.10 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 353.49 15.07 5.33 5.33 Total: -1.00 -28.02 353.49 -7.25 -35.27 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.85 Total: 3.30 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -0.82 Total: -4.16 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: 0.26 Total: -51.62 kcal Atomic # 8 Polarization: -3.37 SS G_CDS: -0.15 Total: -3.52 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.02 -7.25 -35.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930694380.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.744 kcal (2) G-P(sol) polarization free energy of solvation -28.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds