Wall clock time and date at job start Tue Mar 31 2020 05:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 116.99698 * 2 1 4 4 O 1.20827 * 120.00171 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99919 * 179.97438 * 3 2 1 6 6 C 1.54162 * 111.79512 * 298.64785 * 5 3 2 7 7 C 1.54841 * 104.32645 * 260.36233 * 6 5 3 8 8 C 1.54848 * 102.73569 * 321.81469 * 7 6 5 9 9 C 1.55205 * 111.86911 * 178.42327 * 5 3 2 10 10 H 1.09001 * 111.94064 * 359.91740 * 9 5 3 11 11 C 1.54319 * 104.78854 * 238.52793 * 9 5 3 12 12 N 1.48533 * 104.77124 * 23.94813 * 11 9 5 13 13 C 1.46897 * 110.99710 * 200.75007 * 12 11 9 14 14 C 1.53002 * 109.47591 * 294.27440 * 13 12 11 15 15 H 1.09003 * 109.46680 * 57.97519 * 14 13 12 16 16 O 1.42899 * 109.47042 * 297.98447 * 14 13 12 17 17 C 1.50693 * 109.47559 * 177.98059 * 14 13 12 18 18 H 1.08005 * 119.99955 * 0.02562 * 17 14 13 19 19 C 1.37877 * 120.00194 * 180.02562 * 17 14 13 20 20 N 1.31513 * 119.99931 * 359.97438 * 19 17 14 21 21 Si 1.86797 * 120.00000 * 180.02562 * 19 17 14 22 22 H 1.48505 * 109.47159 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47292 * 119.99989 * 21 19 17 24 24 H 1.48500 * 109.47072 * 240.00026 * 21 19 17 25 25 C 1.48532 * 104.21270 * 320.30433 * 12 11 9 26 26 H 1.08998 * 109.47080 * 60.00930 * 1 2 3 27 27 H 1.09005 * 109.46617 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47148 * 300.00209 * 1 2 3 29 29 H 1.08996 * 110.46002 * 19.07606 * 6 5 3 30 30 H 1.09000 * 110.46211 * 141.64763 * 6 5 3 31 31 H 1.08995 * 110.75987 * 80.13074 * 7 6 5 32 32 H 1.09001 * 110.75572 * 203.50578 * 7 6 5 33 33 H 1.09005 * 110.45961 * 156.89237 * 8 7 6 34 34 H 1.08990 * 110.46696 * 279.34452 * 8 7 6 35 35 H 1.09001 * 110.39650 * 265.09221 * 11 9 5 36 36 H 1.08997 * 110.39483 * 142.80164 * 11 9 5 37 37 H 1.09006 * 109.47221 * 54.27366 * 13 12 11 38 38 H 1.09001 * 109.47568 * 174.27407 * 13 12 11 39 39 H 0.96700 * 113.99954 * 299.99595 * 16 14 13 40 40 H 0.97003 * 119.99785 * 179.97438 * 20 19 17 41 41 H 1.09004 * 110.39418 * 158.44571 * 25 12 11 42 42 H 1.09005 * 110.39289 * 280.72962 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.1733 0.6199 1.2572 7 6 4.4865 1.8103 2.1965 8 6 4.9867 2.8978 1.2142 9 6 4.0682 2.7431 -0.0391 10 1 3.2432 3.4551 -0.0618 11 6 4.9351 2.8287 -1.3130 12 7 4.4335 1.7370 -2.1864 13 6 5.4362 1.3662 -3.1939 14 6 5.6534 2.5384 -4.1530 15 1 5.9696 3.4157 -3.5886 16 8 4.4323 2.8267 -4.8369 17 6 6.7177 2.1760 -5.1563 18 1 7.1916 1.2063 -5.1145 19 6 7.0866 3.0822 -6.1278 20 7 6.5092 4.2627 -6.1790 21 14 8.4054 2.6326 -7.3719 22 1 8.8935 1.2566 -7.1006 23 1 7.8355 2.6951 -8.7418 24 1 9.5361 3.5890 -7.2621 25 6 4.1761 0.6115 -1.2521 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 3.4527 -0.0530 1.7219 30 1 5.0878 0.0838 1.0034 31 1 3.5861 2.1415 2.7138 32 1 5.2673 1.5449 2.9093 33 1 4.8605 3.8900 1.6478 34 1 6.0314 2.7261 0.9554 35 1 5.9853 2.6680 -1.0693 36 1 4.8020 3.7953 -1.7987 37 1 6.3762 1.1230 -2.6986 38 1 5.0855 0.4991 -3.7536 39 1 4.0912 2.0890 -5.3608 40 1 6.7690 4.9004 -6.8623 41 1 3.4693 -0.0927 -1.6912 42 1 5.1084 0.1058 -1.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931690521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:55 Heat of formation + Delta-G solvation = -133.992095 kcal Electronic energy + Delta-G solvation = -23591.436072 eV Core-core repulsion = 20150.239867 eV Total energy + Delta-G solvation = -3441.196205 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.07085 -39.10232 -36.50105 -36.13093 -34.39170 -32.06118 -31.02399 -29.97696 -27.96008 -27.19093 -25.59454 -24.55038 -22.67662 -21.54052 -20.94981 -19.84287 -18.87710 -17.22354 -17.09880 -16.85309 -16.37796 -15.24276 -15.10364 -14.57856 -14.47087 -14.32159 -14.11507 -13.67098 -13.28233 -13.08856 -12.94106 -12.65839 -12.20362 -12.08102 -11.84693 -11.47725 -11.24083 -11.19671 -11.03741 -10.93430 -10.88717 -10.78107 -10.72704 -10.68456 -10.45716 -10.38586 -10.16643 -10.01491 -8.97251 -8.56096 -8.08063 -7.81983 -5.99038 -4.17732 2.27854 2.68727 3.27164 3.35446 3.38360 4.19886 4.24095 4.40315 4.55457 4.76001 4.93704 5.02359 5.10399 5.13310 5.18951 5.23294 5.28673 5.40123 5.42782 5.52630 5.56246 5.71863 5.77760 5.86928 5.90838 5.93424 6.04562 6.08454 6.15773 6.21882 6.37501 6.39298 6.53458 6.58233 6.80377 7.29071 7.53065 7.76604 7.81746 7.87679 8.21323 8.86434 9.48178 9.64540 11.05123 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.024703 B = 0.004275 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.176937 B = 6548.774543 C = 7010.040246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.487 3.513 4 O -0.500 6.500 5 C -0.059 4.059 6 C -0.109 4.109 7 C -0.125 4.125 8 C -0.119 4.119 9 C -0.081 4.081 10 H 0.106 0.894 11 C 0.042 3.958 12 N -0.499 5.499 13 C 0.020 3.980 14 C 0.238 3.762 15 H 0.054 0.946 16 O -0.554 6.554 17 C -0.575 4.575 18 H 0.055 0.945 19 C 0.080 3.920 20 N -0.858 5.858 21 Si 0.888 3.112 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.044 3.956 26 H 0.064 0.936 27 H 0.099 0.901 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.046 0.954 36 H 0.089 0.911 37 H 0.031 0.969 38 H 0.065 0.935 39 H 0.343 0.657 40 H 0.260 0.740 41 H 0.082 0.918 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.435 -8.512 16.416 19.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.330 3.670 4 O -0.386 6.386 5 C -0.061 4.061 6 C -0.147 4.147 7 C -0.163 4.163 8 C -0.156 4.156 9 C -0.100 4.100 10 H 0.124 0.876 11 C -0.086 4.086 12 N -0.223 5.223 13 C -0.108 4.108 14 C 0.179 3.821 15 H 0.072 0.928 16 O -0.356 6.356 17 C -0.613 4.613 18 H 0.073 0.927 19 C -0.126 4.126 20 N -0.493 5.493 21 Si 0.716 3.284 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.084 4.084 26 H 0.083 0.917 27 H 0.117 0.883 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.107 0.893 37 H 0.049 0.951 38 H 0.083 0.917 39 H 0.186 0.814 40 H 0.070 0.930 41 H 0.100 0.900 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.069 -7.295 16.300 19.206 hybrid contribution 1.247 -1.047 -0.687 1.768 sum -5.821 -8.342 15.613 18.634 Atomic orbital electron populations 1.23240 0.76638 1.03438 1.02535 1.86487 1.23142 1.33626 1.84312 1.23204 0.91204 0.81130 0.71493 1.90630 1.66747 1.36367 1.44878 1.21860 0.86988 0.99044 0.98187 1.22503 1.01075 0.97685 0.93419 1.22536 1.01105 0.95230 0.97423 1.22832 0.99064 0.99086 0.94659 1.23070 0.98309 0.93576 0.95024 0.87560 1.23225 0.95966 0.97750 0.91655 1.65512 1.41921 1.04352 1.10466 1.23269 0.91348 1.01780 0.94378 1.19303 0.83039 0.91110 0.88606 0.92786 1.86571 1.41503 1.41282 1.66246 1.21692 1.22721 1.01416 1.15491 0.92688 1.25022 0.95585 0.94698 0.97307 1.70098 1.40169 1.05873 1.33193 0.86630 0.81786 0.78565 0.81463 1.19751 1.20852 1.20908 1.23250 0.99547 0.94838 0.90808 0.91746 0.88273 0.92172 0.90807 0.89861 0.91510 0.90988 0.91185 0.90819 0.93578 0.89312 0.95117 0.91684 0.81441 0.93044 0.89989 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.66 10.25 -39.26 -0.40 -5.06 16 3 C 0.49 7.32 6.58 36.01 0.24 7.55 16 4 O -0.50 -8.79 15.23 -18.75 -0.29 -9.07 16 5 C -0.06 -0.81 0.89 -153.20 -0.14 -0.95 16 6 C -0.11 -1.15 5.97 -25.15 -0.15 -1.30 16 7 C -0.13 -1.22 6.90 -24.79 -0.17 -1.39 16 8 C -0.12 -1.35 6.40 -24.06 -0.15 -1.50 16 9 C -0.08 -1.18 3.61 -87.07 -0.31 -1.49 16 10 H 0.11 1.73 6.78 -51.93 -0.35 1.38 16 11 C 0.04 0.73 5.13 -2.23 -0.01 0.71 16 12 N -0.50 -9.32 5.30 -230.10 -1.22 -10.54 16 13 C 0.02 0.42 4.42 -3.82 -0.02 0.40 16 14 C 0.24 6.06 2.78 -27.88 -0.08 5.98 16 15 H 0.05 1.51 7.00 -51.93 -0.36 1.15 16 16 O -0.55 -14.83 12.63 -35.23 -0.45 -15.27 16 17 C -0.57 -15.79 8.76 -34.44 -0.30 -16.09 16 18 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 19 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 20 N -0.86 -25.58 12.84 55.43 0.71 -24.87 16 21 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C 0.04 0.66 5.61 -2.23 -0.01 0.65 16 26 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 27 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 29 H 0.07 0.72 7.75 -51.93 -0.40 0.31 16 30 H 0.08 0.81 7.19 -51.93 -0.37 0.43 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.82 7.26 -51.93 -0.38 0.44 16 35 H 0.05 0.76 6.97 -51.93 -0.36 0.40 16 36 H 0.09 1.74 7.64 -51.93 -0.40 1.34 16 37 H 0.03 0.62 7.96 -51.93 -0.41 0.20 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.34 8.25 9.04 45.56 0.41 8.67 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.08 1.23 7.75 -51.93 -0.40 0.83 16 42 H 0.05 0.75 7.04 -51.93 -0.37 0.38 16 LS Contribution 335.54 15.07 5.06 5.06 Total: -1.00 -32.59 335.54 -7.64 -40.23 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -5.90 Total: 7.25 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -0.14 Total: -3.86 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: -0.51 Total: -35.41 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -1.13 Total: -29.41 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.59 -7.64 -40.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931690521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.760 kcal (2) G-P(sol) polarization free energy of solvation -32.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds