Wall clock time and date at job start Tue Mar 31 2020 05:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 116.99698 * 2 1 4 4 O 1.20827 * 120.00171 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99919 * 179.97438 * 3 2 1 6 6 C 1.54162 * 111.79512 * 298.64785 * 5 3 2 7 7 C 1.54841 * 104.32645 * 260.36233 * 6 5 3 8 8 C 1.54848 * 102.73569 * 321.81469 * 7 6 5 9 9 C 1.55205 * 111.86911 * 178.42327 * 5 3 2 10 10 H 1.09001 * 111.94064 * 359.91740 * 9 5 3 11 11 C 1.54319 * 104.78854 * 238.52793 * 9 5 3 12 12 N 1.48533 * 104.77124 * 23.94813 * 11 9 5 13 13 C 1.46897 * 110.99710 * 200.75007 * 12 11 9 14 14 C 1.53002 * 109.47591 * 294.27440 * 13 12 11 15 15 H 1.09003 * 109.46680 * 57.97519 * 14 13 12 16 16 O 1.42899 * 109.47042 * 297.98447 * 14 13 12 17 17 C 1.50693 * 109.47559 * 177.98059 * 14 13 12 18 18 H 1.08005 * 119.99955 * 0.02562 * 17 14 13 19 19 C 1.37877 * 120.00194 * 180.02562 * 17 14 13 20 20 N 1.31513 * 119.99931 * 359.97438 * 19 17 14 21 21 Si 1.86797 * 120.00000 * 180.02562 * 19 17 14 22 22 H 1.48505 * 109.47159 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47292 * 119.99989 * 21 19 17 24 24 H 1.48500 * 109.47072 * 240.00026 * 21 19 17 25 25 C 1.48532 * 104.21270 * 320.30433 * 12 11 9 26 26 H 1.08998 * 109.47080 * 60.00930 * 1 2 3 27 27 H 1.09005 * 109.46617 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47148 * 300.00209 * 1 2 3 29 29 H 1.08996 * 110.46002 * 19.07606 * 6 5 3 30 30 H 1.09000 * 110.46211 * 141.64763 * 6 5 3 31 31 H 1.08995 * 110.75987 * 80.13074 * 7 6 5 32 32 H 1.09001 * 110.75572 * 203.50578 * 7 6 5 33 33 H 1.09005 * 110.45961 * 156.89237 * 8 7 6 34 34 H 1.08990 * 110.46696 * 279.34452 * 8 7 6 35 35 H 1.09001 * 110.39650 * 265.09221 * 11 9 5 36 36 H 1.08997 * 110.39483 * 142.80164 * 11 9 5 37 37 H 1.09006 * 109.47221 * 54.27366 * 13 12 11 38 38 H 1.09001 * 109.47568 * 174.27407 * 13 12 11 39 39 H 0.96700 * 113.99954 * 299.99595 * 16 14 13 40 40 H 0.97003 * 119.99785 * 179.97438 * 20 19 17 41 41 H 1.09004 * 110.39418 * 158.44571 * 25 12 11 42 42 H 1.09005 * 110.39289 * 280.72962 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.1733 0.6199 1.2572 7 6 4.4865 1.8103 2.1965 8 6 4.9867 2.8978 1.2142 9 6 4.0682 2.7431 -0.0391 10 1 3.2432 3.4551 -0.0618 11 6 4.9351 2.8287 -1.3130 12 7 4.4335 1.7370 -2.1864 13 6 5.4362 1.3662 -3.1939 14 6 5.6534 2.5384 -4.1530 15 1 5.9696 3.4157 -3.5886 16 8 4.4323 2.8267 -4.8369 17 6 6.7177 2.1760 -5.1563 18 1 7.1916 1.2063 -5.1145 19 6 7.0866 3.0822 -6.1278 20 7 6.5092 4.2627 -6.1790 21 14 8.4054 2.6326 -7.3719 22 1 8.8935 1.2566 -7.1006 23 1 7.8355 2.6951 -8.7418 24 1 9.5361 3.5890 -7.2621 25 6 4.1761 0.6115 -1.2521 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 3.4527 -0.0530 1.7219 30 1 5.0878 0.0838 1.0034 31 1 3.5861 2.1415 2.7138 32 1 5.2673 1.5449 2.9093 33 1 4.8605 3.8900 1.6478 34 1 6.0314 2.7261 0.9554 35 1 5.9853 2.6680 -1.0693 36 1 4.8020 3.7953 -1.7987 37 1 6.3762 1.1230 -2.6986 38 1 5.0855 0.4991 -3.7536 39 1 4.0912 2.0890 -5.3608 40 1 6.7690 4.9004 -6.8623 41 1 3.4693 -0.0927 -1.6912 42 1 5.1084 0.1058 -1.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931690521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:54 Heat of formation + Delta-G solvation = -158.122429 kcal Electronic energy + Delta-G solvation = -23592.482442 eV Core-core repulsion = 20150.239867 eV Total energy + Delta-G solvation = -3442.242575 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.20769 -40.28431 -38.06374 -37.42440 -35.91320 -34.22544 -32.14335 -31.38288 -29.37026 -28.39791 -26.72981 -26.26992 -23.89048 -23.07655 -22.04481 -21.26883 -20.04554 -19.02321 -18.30451 -18.15341 -17.45163 -16.69234 -16.53578 -16.39088 -16.01351 -15.62017 -15.46691 -14.99514 -14.62190 -14.45524 -14.26859 -14.02494 -13.53543 -13.16441 -13.10791 -12.97505 -12.84806 -12.76190 -12.58536 -12.31442 -12.10282 -11.99785 -11.93983 -11.84831 -11.74637 -11.68167 -11.52790 -11.29202 -11.00042 -10.70678 -10.09764 -9.30381 -8.13227 -6.39892 1.12555 1.40166 1.41241 1.53612 1.68887 2.38504 3.03644 3.13271 3.14566 3.42364 3.66440 3.92395 4.07080 4.20189 4.25108 4.28948 4.30260 4.31271 4.32200 4.39279 4.49450 4.52085 4.65697 4.69785 4.73109 4.77822 4.87891 4.95926 5.00857 5.02606 5.13962 5.17895 5.22786 5.31913 5.45263 5.58400 5.72716 5.93521 5.99724 6.16912 6.70019 6.74296 7.34719 7.60446 8.91754 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.024703 B = 0.004275 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.176937 B = 6548.774543 C = 7010.040246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.485 3.515 4 O -0.535 6.535 5 C -0.058 4.058 6 C -0.103 4.103 7 C -0.118 4.118 8 C -0.114 4.114 9 C -0.081 4.081 10 H 0.081 0.919 11 C 0.045 3.955 12 N -0.523 5.523 13 C 0.039 3.961 14 C 0.236 3.764 15 H 0.019 0.981 16 O -0.575 6.575 17 C -0.587 4.587 18 H 0.063 0.937 19 C 0.025 3.975 20 N -0.902 5.902 21 Si 0.962 3.038 22 H -0.260 1.260 23 H -0.280 1.280 24 H -0.279 1.279 25 C 0.047 3.953 26 H 0.052 0.948 27 H 0.136 0.864 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.038 0.962 38 H 0.071 0.929 39 H 0.352 0.648 40 H 0.261 0.739 41 H 0.083 0.917 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.551 -10.991 17.787 21.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.273 6.273 3 C 0.329 3.671 4 O -0.424 6.424 5 C -0.060 4.060 6 C -0.140 4.140 7 C -0.155 4.155 8 C -0.152 4.152 9 C -0.100 4.100 10 H 0.099 0.901 11 C -0.083 4.083 12 N -0.247 5.247 13 C -0.089 4.089 14 C 0.178 3.822 15 H 0.037 0.963 16 O -0.378 6.378 17 C -0.625 4.625 18 H 0.081 0.919 19 C -0.178 4.178 20 N -0.539 5.539 21 Si 0.787 3.213 22 H -0.184 1.184 23 H -0.206 1.206 24 H -0.205 1.205 25 C -0.080 4.080 26 H 0.071 0.929 27 H 0.154 0.846 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.118 0.882 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.089 0.911 39 H 0.196 0.804 40 H 0.070 0.930 41 H 0.101 0.899 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.189 -9.813 17.687 21.152 hybrid contribution 0.865 -0.266 -1.118 1.438 sum -5.324 -10.079 16.569 20.111 Atomic orbital electron populations 1.23554 0.74911 1.05799 1.02279 1.86476 1.24840 1.32349 1.83685 1.23505 0.91776 0.81193 0.70590 1.90619 1.67587 1.37590 1.46632 1.21906 0.86423 0.98338 0.99347 1.22552 1.01800 0.98011 0.91658 1.22533 1.01878 0.93928 0.97182 1.22825 0.98568 1.00391 0.93393 1.22977 0.97769 0.94016 0.95197 0.90087 1.23140 0.97030 0.95688 0.92461 1.65380 1.41363 1.06251 1.11708 1.22852 0.92420 0.99436 0.94165 1.19192 0.82339 0.91606 0.89028 0.96341 1.86519 1.42041 1.42371 1.66845 1.22089 1.23003 1.01608 1.15802 0.91930 1.25930 0.97881 0.94447 0.99497 1.70250 1.42180 1.07198 1.34283 0.85474 0.78652 0.78748 0.78462 1.18411 1.20628 1.20497 1.23297 1.00644 0.93644 0.90463 0.92915 0.84598 0.91618 0.89482 0.88225 0.91613 0.88254 0.90607 0.90158 0.92772 0.93146 0.94340 0.91053 0.80399 0.93049 0.89889 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.36 -8.68 10.25 -51.42 -0.53 -9.21 16 3 C 0.49 14.23 6.58 71.24 0.47 14.70 16 4 O -0.54 -19.11 15.23 21.96 0.33 -18.77 16 5 C -0.06 -1.52 0.89 -51.33 -0.05 -1.57 16 6 C -0.10 -1.82 5.97 31.62 0.19 -1.63 16 7 C -0.12 -1.92 6.90 31.85 0.22 -1.70 16 8 C -0.11 -2.40 6.40 32.32 0.21 -2.19 16 9 C -0.08 -2.35 3.61 -8.49 -0.03 -2.38 16 10 H 0.08 2.78 6.78 -2.39 -0.02 2.77 16 11 C 0.04 1.60 5.13 86.43 0.44 2.04 16 12 N -0.52 -19.66 5.30 -881.90 -4.68 -24.34 16 13 C 0.04 1.63 4.42 86.30 0.38 2.01 16 14 C 0.24 12.39 2.78 29.85 0.08 12.47 16 15 H 0.02 1.10 7.00 -2.39 -0.02 1.08 16 16 O -0.57 -31.83 12.63 -148.98 -1.88 -33.71 16 17 C -0.59 -32.42 8.76 25.60 0.22 -32.19 16 18 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 19 C 0.02 1.39 5.40 84.65 0.46 1.85 16 20 N -0.90 -55.11 12.84 21.45 0.28 -54.84 16 21 Si 0.96 43.48 29.54 68.60 2.03 45.51 16 22 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 25 C 0.05 1.35 5.61 86.43 0.49 1.83 16 26 H 0.05 1.08 8.13 -2.39 -0.02 1.06 16 27 H 0.14 1.43 8.14 -2.38 -0.02 1.41 16 28 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16 29 H 0.09 1.36 7.75 -2.39 -0.02 1.34 16 30 H 0.10 1.49 7.19 -2.39 -0.02 1.47 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.08 1.60 7.26 -2.39 -0.02 1.58 16 35 H 0.05 1.81 6.97 -2.39 -0.02 1.79 16 36 H 0.05 2.14 7.64 -2.39 -0.02 2.12 16 37 H 0.04 1.51 7.96 -2.38 -0.02 1.49 16 38 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 39 H 0.35 17.43 9.04 -74.06 -0.67 16.76 16 40 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 41 H 0.08 2.35 7.75 -2.38 -0.02 2.33 16 42 H 0.08 1.87 7.04 -2.38 -0.02 1.85 16 Total: -1.00 -72.29 335.54 0.18 -72.12 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 0.35 Total: 28.31 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: 4.28 Total: -5.08 kcal Atomic # 7 Polarization: -74.77 SS G_CDS: -4.40 Total: -79.18 kcal Atomic # 8 Polarization: -59.61 SS G_CDS: -2.07 Total: -61.69 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -72.29 0.18 -72.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931690521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.004 kcal (2) G-P(sol) polarization free energy of solvation -72.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds