Wall clock time and date at job start Tue Mar 31 2020 06:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21286 * 120.00049 * 2 1 4 4 N 1.34775 * 120.00524 * 179.97438 * 2 1 3 5 5 C 1.46501 * 120.00272 * 180.02562 * 4 2 1 6 6 C 1.53043 * 109.45401 * 205.00016 * 5 4 2 7 7 C 1.53200 * 109.30838 * 178.62772 * 6 5 4 8 8 N 1.46924 * 108.77654 * 54.63417 * 7 6 5 9 9 C 1.34774 * 120.63429 * 126.36713 * 8 7 6 10 10 O 1.21586 * 120.00512 * 185.22731 * 9 8 7 11 11 N 1.34784 * 119.99579 * 5.23244 * 9 8 7 12 12 C 1.46495 * 119.99802 * 175.01574 * 11 9 8 13 13 C 1.52999 * 109.47231 * 179.97438 * 12 11 9 14 14 C 1.50694 * 109.47412 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00232 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00250 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99891 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00458 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46930 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47384 * 120.00054 * 18 16 14 21 21 H 1.48504 * 109.47417 * 240.00491 * 18 16 14 22 22 C 1.46930 * 118.73918 * 306.64490 * 8 7 6 23 23 C 1.52767 * 109.00782 * 53.30524 * 22 8 7 24 24 H 1.09002 * 109.47170 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47064 * 300.00219 * 1 2 3 26 26 H 1.08999 * 109.47326 * 60.00185 * 1 2 3 27 27 H 0.96998 * 119.99328 * 359.97438 * 4 2 1 28 28 H 1.08995 * 109.45666 * 324.97162 * 5 4 2 29 29 H 1.08998 * 109.50039 * 58.67608 * 6 5 4 30 30 H 1.08993 * 109.52537 * 298.59019 * 6 5 4 31 31 H 1.08998 * 109.58191 * 294.84735 * 7 6 5 32 32 H 1.09000 * 109.70456 * 174.49344 * 7 6 5 33 33 H 0.97001 * 119.99741 * 355.00924 * 11 9 8 34 34 H 1.09001 * 109.47126 * 59.99487 * 12 11 9 35 35 H 1.09000 * 109.47373 * 299.99273 * 12 11 9 36 36 H 1.09006 * 109.47073 * 300.00452 * 13 12 11 37 37 H 1.09003 * 109.46699 * 59.99584 * 13 12 11 38 38 H 0.97003 * 120.00049 * 179.97438 * 17 16 14 39 39 H 1.08993 * 109.58889 * 173.14535 * 22 8 7 40 40 H 1.09001 * 109.58692 * 293.57275 * 22 8 7 41 41 H 1.08993 * 109.56435 * 185.55251 * 23 22 8 42 42 H 1.09005 * 109.38001 * 65.52056 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.6460 -1.1671 0.0011 6 6 4.1560 -2.4750 -0.6083 7 6 5.6876 -2.4569 -0.6375 8 7 6.1833 -2.1897 0.7195 9 6 7.0765 -3.0158 1.2995 10 8 7.4072 -2.8383 2.4559 11 7 7.6030 -4.0388 0.5973 12 6 8.6535 -4.8701 1.1903 13 6 9.0723 -5.9514 0.1922 14 6 10.1533 -6.8062 0.8019 15 1 10.5060 -6.5993 1.8014 16 6 10.6913 -7.8532 0.0840 17 7 10.2615 -8.1056 -1.1330 18 14 12.0318 -8.9124 0.8394 19 1 12.3358 -8.4242 2.2085 20 1 11.5691 -10.3218 0.9084 21 1 13.2558 -8.8336 0.0022 22 6 5.6823 -1.0082 1.4348 23 6 4.1549 -1.0394 1.4386 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.6959 -2.0071 0.0013 28 1 4.0092 -0.3256 -0.5888 29 1 3.7739 -2.5765 -1.6240 30 1 3.8136 -3.3158 -0.0051 31 1 6.0309 -1.6733 -1.3128 32 1 6.0601 -3.4227 -0.9791 33 1 7.2864 -4.2245 -0.3006 34 1 8.2754 -5.3406 2.0979 35 1 9.5144 -4.2480 1.4350 36 1 8.2112 -6.5734 -0.0523 37 1 9.4502 -5.4811 -0.7157 38 1 10.6403 -8.8419 -1.6383 39 1 6.0492 -1.0194 2.4611 40 1 6.0251 -0.1039 0.9319 41 1 3.7721 -0.1192 1.8798 42 1 3.8121 -1.8932 2.0232 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116569821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:13 Heat of formation + Delta-G solvation = -77.156954 kcal Electronic energy + Delta-G solvation = -22182.789387 eV Core-core repulsion = 18776.350490 eV Total energy + Delta-G solvation = -3406.438897 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.54508 -39.66547 -37.52805 -34.95858 -34.71767 -32.94133 -31.88756 -31.30975 -29.81362 -29.06528 -25.28385 -24.33728 -23.40902 -21.45406 -20.94099 -20.78329 -19.43864 -18.14164 -17.05375 -16.56653 -16.37321 -15.83977 -15.57709 -15.37715 -14.56610 -14.44327 -14.28009 -14.05433 -13.83682 -13.61069 -13.38649 -13.04589 -12.81803 -12.55660 -12.44309 -12.29569 -12.05874 -11.53049 -11.22765 -11.11885 -11.05083 -10.93464 -10.61477 -10.33813 -10.20119 -9.89332 -9.55397 -9.37786 -9.24833 -8.76465 -8.47280 -8.20535 -6.09998 -4.12330 2.31724 2.81182 2.91150 3.28212 3.35897 3.41422 3.54358 4.17092 4.33357 4.44008 4.51976 4.58704 4.74537 4.77813 4.94033 5.01348 5.04961 5.19172 5.27350 5.27849 5.40478 5.50816 5.53399 5.64559 5.74390 5.82832 6.01340 6.15902 6.26902 6.39970 6.58542 6.77238 6.99525 7.14561 7.17455 7.55203 7.62401 7.89430 7.89461 8.24129 8.36566 8.91984 8.97745 9.52526 11.01752 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.041075 B = 0.002690 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.516572 B =10405.682711 C =10822.201022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.510 3.490 3 O -0.547 6.547 4 N -0.727 5.727 5 C 0.144 3.856 6 C -0.142 4.142 7 C 0.116 3.884 8 N -0.636 5.636 9 C 0.703 3.297 10 O -0.595 6.595 11 N -0.739 5.739 12 C 0.139 3.861 13 C 0.013 3.987 14 C -0.519 4.519 15 H 0.060 0.940 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.897 3.103 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.134 3.866 23 C -0.143 4.143 24 H 0.075 0.925 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.400 0.600 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.392 0.608 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.021 0.979 37 H 0.022 0.978 38 H 0.261 0.739 39 H 0.097 0.903 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.917 13.224 -1.659 23.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.297 3.703 3 O -0.425 6.425 4 N -0.378 5.378 5 C 0.040 3.960 6 C -0.181 4.181 7 C -0.009 4.009 8 N -0.375 5.375 9 C 0.404 3.596 10 O -0.474 6.474 11 N -0.394 5.394 12 C 0.016 3.984 13 C -0.025 4.025 14 C -0.558 4.558 15 H 0.079 0.921 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.724 3.276 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.209 1.209 22 C 0.010 3.990 23 C -0.183 4.183 24 H 0.094 0.906 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.235 0.765 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.227 0.773 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.115 0.885 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.156 13.976 -0.947 23.731 hybrid contribution 0.218 -1.246 -0.227 1.285 sum -18.938 12.730 -1.174 22.849 Atomic orbital electron populations 1.21858 0.91771 1.04198 1.05304 1.20835 0.90597 0.83570 0.75324 1.90738 1.70733 1.31394 1.49603 1.46255 1.07330 1.08767 1.75462 1.20974 0.79277 0.98854 0.96935 1.22212 0.96463 0.97364 1.02028 1.21523 0.92740 1.02362 0.84234 1.47311 1.46242 1.27613 1.16381 1.15965 0.79142 0.79808 0.84647 1.90877 1.65491 1.75134 1.15856 1.45712 1.42377 1.32290 1.19057 1.21603 0.87273 0.91842 0.97687 1.19325 0.96862 0.92183 0.94083 1.21091 1.19981 1.13346 1.01364 0.92148 1.24999 0.97063 0.97427 0.94868 1.69966 1.42828 1.30234 1.10368 0.86455 0.81540 0.80107 0.79459 1.19562 1.20959 1.20943 1.21252 0.92161 0.86508 0.99123 1.22250 0.96255 1.03095 0.96660 0.90600 0.88765 0.88770 0.76516 0.89153 0.89965 0.90644 0.91047 0.89471 0.77263 0.92721 0.92810 0.96027 0.96000 0.92929 0.88477 0.91738 0.90367 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.78 10.39 36.00 0.37 -0.41 16 2 C 0.51 4.38 7.90 -10.99 -0.09 4.30 16 3 O -0.55 -7.25 16.76 5.55 0.09 -7.16 16 4 N -0.73 -5.06 5.08 -53.77 -0.27 -5.33 16 5 C 0.14 1.24 2.42 -67.89 -0.16 1.07 16 6 C -0.14 -1.08 5.55 -26.61 -0.15 -1.23 16 7 C 0.12 1.13 6.39 -3.71 -0.02 1.10 16 8 N -0.64 -8.45 2.98 -178.75 -0.53 -8.99 16 9 C 0.70 12.57 8.30 -86.91 -0.72 11.85 16 10 O -0.59 -12.96 15.77 5.29 0.08 -12.88 16 11 N -0.74 -13.22 5.47 -65.23 -0.36 -13.57 16 12 C 0.14 3.00 5.62 -4.05 -0.02 2.97 16 13 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 14 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 15 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 18 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.13 1.59 6.41 -3.93 -0.03 1.57 16 23 C -0.14 -1.43 5.63 -26.83 -0.15 -1.58 16 24 H 0.07 0.17 7.91 -51.93 -0.41 -0.24 16 25 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.40 1.73 8.44 -40.82 -0.34 1.38 16 28 H 0.09 0.91 7.58 -51.93 -0.39 0.52 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.84 5.64 -51.93 -0.29 0.54 16 33 H 0.39 6.03 5.96 -40.82 -0.24 5.79 16 34 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.10 1.34 6.99 -51.93 -0.36 0.98 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 344.74 15.07 5.20 5.20 Total: -1.00 -35.01 344.74 -8.26 -43.27 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -6.66 Total: 1.74 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -1.52 Total: 6.66 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.43 Total: -53.15 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: 0.18 Total: -20.04 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.01 -8.26 -43.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116569821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.890 kcal (2) G-P(sol) polarization free energy of solvation -35.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds