Wall clock time and date at job start Tue Mar 31 2020 06:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99457 * 2 1 4 4 H 1.48496 * 109.47111 * 269.99393 * 3 2 1 5 5 H 1.48494 * 109.47201 * 30.00136 * 3 2 1 6 6 H 1.48506 * 109.46710 * 149.99898 * 3 2 1 7 7 C 1.37876 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99985 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99653 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47008 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47301 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47059 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99828 * 179.72339 * 12 11 10 14 14 O 1.21593 * 119.99949 * 0.28071 * 13 12 11 15 15 N 1.34777 * 120.00128 * 180.27942 * 13 12 11 16 16 C 1.48208 * 119.97132 * 180.02562 * 15 13 12 17 17 C 1.47144 * 110.34940 * 102.46433 * 16 15 13 18 18 C 1.53791 * 111.83830 * 58.29100 * 17 16 15 19 19 N 1.43473 * 107.96513 * 281.67400 * 18 17 16 20 20 C 1.34771 * 118.93989 * 273.63528 * 19 18 17 21 21 O 1.21278 * 120.00276 * 359.97438 * 20 19 18 22 22 C 1.48856 * 122.11396 * 93.65450 * 19 18 17 23 23 C 1.43622 * 119.96915 * 359.72467 * 15 13 12 24 24 H 0.96996 * 120.00642 * 0.02562 * 1 2 3 25 25 H 1.08990 * 109.47431 * 59.99962 * 9 7 2 26 26 H 1.09002 * 109.47072 * 299.99242 * 9 7 2 27 27 H 1.09004 * 109.47038 * 59.99609 * 10 9 7 28 28 H 1.09000 * 109.46939 * 300.00262 * 10 9 7 29 29 H 1.09004 * 109.47066 * 60.00027 * 11 10 9 30 30 H 1.08994 * 109.46974 * 300.00175 * 11 10 9 31 31 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 32 32 H 1.09004 * 109.32395 * 222.72963 * 16 15 13 33 33 H 1.09002 * 109.33012 * 342.36868 * 16 15 13 34 34 H 1.09000 * 109.00859 * 178.90538 * 17 16 15 35 35 H 1.09000 * 108.99812 * 297.76350 * 17 16 15 36 36 H 1.09001 * 109.76667 * 41.29530 * 18 17 16 37 37 H 1.09001 * 109.76037 * 162.00743 * 18 17 16 38 38 H 1.08003 * 120.00158 * 179.97438 * 20 19 18 39 39 H 1.08998 * 109.48344 * 80.58868 * 22 19 18 40 40 H 1.09000 * 109.47432 * 200.60572 * 22 19 18 41 41 H 1.08997 * 108.87623 * 31.47220 * 23 15 13 42 42 H 1.08994 * 108.87096 * 149.91263 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0023 11 6 5.5517 -2.6363 0.0022 12 7 6.0400 -4.0175 0.0040 13 6 7.3651 -4.2637 -0.0014 14 8 8.1552 -3.3395 -0.0025 15 7 7.8145 -5.5344 -0.0055 16 6 9.2717 -5.8044 -0.0108 17 6 9.7250 -6.1932 1.3340 18 6 8.9832 -7.4375 1.8502 19 7 7.6877 -7.0228 2.3064 20 6 7.5532 -6.5785 3.5716 21 8 8.5184 -6.5343 4.3047 22 6 6.4873 -7.0681 1.4273 23 6 6.8807 -6.6256 0.0018 24 1 -0.4851 0.8400 -0.0004 25 1 3.8746 -0.6799 0.8910 26 1 3.8752 -0.6803 -0.8889 27 1 3.6587 -3.1509 -0.8875 28 1 3.6580 -3.1496 0.8925 29 1 5.9150 -2.1217 0.8918 30 1 5.9149 -2.1232 -0.8881 31 1 5.4098 -4.7549 0.0045 32 1 9.4865 -6.6116 -0.7112 33 1 9.8041 -4.9056 -0.3223 34 1 10.7937 -6.4051 1.3010 35 1 9.5486 -5.3655 2.0210 36 1 8.8753 -8.1632 1.0441 37 1 9.5400 -7.8828 2.6747 38 1 6.5859 -6.2616 3.9328 39 1 6.0955 -8.0848 1.3991 40 1 5.7244 -6.3954 1.8191 41 1 5.9787 -6.3214 -0.5291 42 1 7.3252 -7.4735 -0.5191 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119087321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:41 Heat of formation + Delta-G solvation = -58.198561 kcal Electronic energy + Delta-G solvation = -22826.116528 eV Core-core repulsion = 19420.499728 eV Total energy + Delta-G solvation = -3405.616800 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.94714 -39.55891 -37.31440 -35.67184 -34.64169 -33.95360 -32.96779 -31.31091 -28.89157 -27.53128 -26.62891 -23.75029 -23.40589 -22.18896 -20.65285 -20.32987 -19.56333 -18.51322 -17.18697 -17.11382 -16.67755 -16.20222 -15.70747 -15.44306 -14.80486 -14.57376 -14.51334 -14.14296 -14.05892 -13.65120 -13.44275 -13.14735 -13.01268 -12.71545 -12.19694 -12.04532 -11.92198 -11.87579 -11.51838 -11.22419 -11.08523 -10.91330 -10.29078 -10.13174 -10.03888 -9.84932 -9.70580 -9.25435 -9.18899 -8.94324 -8.66728 -8.57439 -6.08553 -4.07440 2.44048 2.48443 2.82291 3.18750 3.30276 3.38122 3.42546 3.85477 4.32262 4.35138 4.42877 4.45402 4.61042 4.82689 4.90716 5.00308 5.05591 5.08973 5.25769 5.27937 5.34257 5.49263 5.54069 5.64876 5.70527 5.94186 5.99285 6.22924 6.29950 6.37225 6.42475 6.62593 6.77730 6.85957 6.97316 7.20334 7.33834 7.73223 7.85530 7.94464 8.47279 8.59530 8.94838 9.53855 11.04598 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.025297 B = 0.003349 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.598195 B = 8358.911197 C = 8641.784061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.112 4.112 11 C 0.131 3.869 12 N -0.741 5.741 13 C 0.703 3.297 14 O -0.588 6.588 15 N -0.623 5.623 16 C 0.136 3.864 17 C -0.158 4.158 18 C 0.117 3.883 19 N -0.612 5.612 20 C 0.490 3.510 21 O -0.553 6.553 22 C 0.087 3.913 23 C 0.097 3.903 24 H 0.263 0.737 25 H 0.019 0.981 26 H 0.015 0.985 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.393 0.607 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.126 0.874 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.724 -19.257 -0.004 24.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.150 4.150 11 C 0.008 3.992 12 N -0.397 5.397 13 C 0.404 3.596 14 O -0.466 6.466 15 N -0.360 5.360 16 C 0.013 3.987 17 C -0.198 4.198 18 C -0.006 4.006 19 N -0.348 5.348 20 C 0.260 3.740 21 O -0.428 6.428 22 C -0.037 4.037 23 C -0.029 4.029 24 H 0.073 0.927 25 H 0.037 0.963 26 H 0.033 0.967 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.228 0.772 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.142 0.858 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 16.664 -18.393 0.377 24.822 hybrid contribution -0.209 0.515 -0.074 0.561 sum 16.456 -17.878 0.303 24.300 Atomic orbital electron populations 1.69908 1.06317 1.26994 1.50972 1.25023 0.94741 0.99242 0.94430 0.86783 0.80430 0.83532 0.78611 1.20236 1.21360 1.18872 1.21082 0.89280 0.94482 1.51171 0.91022 1.19499 0.97252 0.91430 0.96722 1.21698 0.90616 1.01074 1.01588 1.21533 0.95711 0.80076 1.01889 1.45492 1.04782 1.10087 1.79319 1.15972 0.83055 0.82780 0.77764 1.90916 1.55049 1.42763 1.57858 1.46760 1.06661 1.03902 1.78679 1.20544 0.79184 1.02243 0.96685 1.21545 1.00549 0.99446 0.98230 1.21018 0.83838 0.95952 0.99842 1.48196 1.09102 1.64422 1.13079 1.22719 0.94180 0.76377 0.80691 1.90700 1.42910 1.53172 1.55993 1.22936 0.87228 1.02426 0.91131 1.21404 0.94645 0.91228 0.95664 0.92678 0.96282 0.96712 0.92188 0.92180 0.91970 0.91949 0.77189 0.91153 0.88923 0.90091 0.90932 0.90685 0.89850 0.85788 0.89833 0.89469 0.89576 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.52 -14.41 9.66 -34.44 -0.33 -14.74 16 8 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.37 16 10 C -0.11 -1.98 5.27 -26.73 -0.14 -2.13 16 11 C 0.13 2.11 5.67 -4.04 -0.02 2.09 16 12 N -0.74 -9.61 5.40 -65.23 -0.35 -9.96 16 13 C 0.70 9.95 8.27 -86.92 -0.72 9.23 16 14 O -0.59 -11.02 15.78 5.28 0.08 -10.94 16 15 N -0.62 -6.11 2.47 -182.75 -0.45 -6.56 16 16 C 0.14 1.20 5.70 -5.91 -0.03 1.16 16 17 C -0.16 -1.39 5.64 -29.13 -0.16 -1.56 16 18 C 0.12 0.88 5.33 -5.23 -0.03 0.85 16 19 N -0.61 -4.87 2.50 -177.86 -0.45 -5.31 16 20 C 0.49 5.05 11.43 54.05 0.62 5.67 16 21 O -0.55 -8.14 16.67 5.56 0.09 -8.05 16 22 C 0.09 0.45 6.82 -2.03 -0.01 0.43 16 23 C 0.10 0.56 4.97 -4.86 -0.02 0.54 16 24 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 26 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.39 3.88 6.22 -40.82 -0.25 3.63 16 32 H 0.07 0.43 8.06 -51.93 -0.42 0.01 16 33 H 0.09 1.03 7.12 -51.93 -0.37 0.66 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.93 7.89 -51.93 -0.41 0.52 16 36 H 0.07 0.38 7.58 -51.93 -0.39 -0.01 16 37 H 0.08 0.73 7.41 -51.93 -0.38 0.35 16 38 H 0.13 0.93 7.93 -52.48 -0.42 0.52 16 39 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.09 0.43 7.87 -51.93 -0.41 0.02 16 41 H 0.09 0.43 6.33 -51.93 -0.33 0.10 16 42 H 0.08 0.33 7.73 -51.93 -0.40 -0.08 16 LS Contribution 337.34 15.07 5.08 5.08 Total: -1.00 -36.56 337.34 -7.63 -44.19 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -6.67 Total: -1.70 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -1.07 Total: 3.01 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: -0.48 Total: -48.47 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.18 Total: -18.99 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -36.56 -7.63 -44.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119087321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.012 kcal (2) G-P(sol) polarization free energy of solvation -36.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds