Wall clock time and date at job start Tue Mar 31 2020 06:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99457 * 2 1 4 4 H 1.48496 * 109.47111 * 269.99393 * 3 2 1 5 5 H 1.48494 * 109.47201 * 30.00136 * 3 2 1 6 6 H 1.48506 * 109.46710 * 149.99898 * 3 2 1 7 7 C 1.37876 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99985 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99653 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47008 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47301 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47059 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99828 * 179.72339 * 12 11 10 14 14 O 1.21593 * 119.99949 * 0.28071 * 13 12 11 15 15 N 1.34777 * 120.00128 * 180.27942 * 13 12 11 16 16 C 1.48208 * 119.97132 * 180.02562 * 15 13 12 17 17 C 1.47144 * 110.34940 * 102.46433 * 16 15 13 18 18 C 1.53791 * 111.83830 * 58.29100 * 17 16 15 19 19 N 1.43473 * 107.96513 * 281.67400 * 18 17 16 20 20 C 1.34771 * 118.93989 * 273.63528 * 19 18 17 21 21 O 1.21278 * 120.00276 * 359.97438 * 20 19 18 22 22 C 1.48856 * 122.11396 * 93.65450 * 19 18 17 23 23 C 1.43622 * 119.96915 * 359.72467 * 15 13 12 24 24 H 0.96996 * 120.00642 * 0.02562 * 1 2 3 25 25 H 1.08990 * 109.47431 * 59.99962 * 9 7 2 26 26 H 1.09002 * 109.47072 * 299.99242 * 9 7 2 27 27 H 1.09004 * 109.47038 * 59.99609 * 10 9 7 28 28 H 1.09000 * 109.46939 * 300.00262 * 10 9 7 29 29 H 1.09004 * 109.47066 * 60.00027 * 11 10 9 30 30 H 1.08994 * 109.46974 * 300.00175 * 11 10 9 31 31 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 32 32 H 1.09004 * 109.32395 * 222.72963 * 16 15 13 33 33 H 1.09002 * 109.33012 * 342.36868 * 16 15 13 34 34 H 1.09000 * 109.00859 * 178.90538 * 17 16 15 35 35 H 1.09000 * 108.99812 * 297.76350 * 17 16 15 36 36 H 1.09001 * 109.76667 * 41.29530 * 18 17 16 37 37 H 1.09001 * 109.76037 * 162.00743 * 18 17 16 38 38 H 1.08003 * 120.00158 * 179.97438 * 20 19 18 39 39 H 1.08998 * 109.48344 * 80.58868 * 22 19 18 40 40 H 1.09000 * 109.47432 * 200.60572 * 22 19 18 41 41 H 1.08997 * 108.87623 * 31.47220 * 23 15 13 42 42 H 1.08994 * 108.87096 * 149.91263 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0023 11 6 5.5517 -2.6363 0.0022 12 7 6.0400 -4.0175 0.0040 13 6 7.3651 -4.2637 -0.0014 14 8 8.1552 -3.3395 -0.0025 15 7 7.8145 -5.5344 -0.0055 16 6 9.2717 -5.8044 -0.0108 17 6 9.7250 -6.1932 1.3340 18 6 8.9832 -7.4375 1.8502 19 7 7.6877 -7.0228 2.3064 20 6 7.5532 -6.5785 3.5716 21 8 8.5184 -6.5343 4.3047 22 6 6.4873 -7.0681 1.4273 23 6 6.8807 -6.6256 0.0018 24 1 -0.4851 0.8400 -0.0004 25 1 3.8746 -0.6799 0.8910 26 1 3.8752 -0.6803 -0.8889 27 1 3.6587 -3.1509 -0.8875 28 1 3.6580 -3.1496 0.8925 29 1 5.9150 -2.1217 0.8918 30 1 5.9149 -2.1232 -0.8881 31 1 5.4098 -4.7549 0.0045 32 1 9.4865 -6.6116 -0.7112 33 1 9.8041 -4.9056 -0.3223 34 1 10.7937 -6.4051 1.3010 35 1 9.5486 -5.3655 2.0210 36 1 8.8753 -8.1632 1.0441 37 1 9.5400 -7.8828 2.6747 38 1 6.5859 -6.2616 3.9328 39 1 6.0955 -8.0848 1.3991 40 1 5.7244 -6.3954 1.8191 41 1 5.9787 -6.3214 -0.5291 42 1 7.3252 -7.4735 -0.5191 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119087321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:40 Heat of formation + Delta-G solvation = -84.768386 kcal Electronic energy + Delta-G solvation = -22827.268682 eV Core-core repulsion = 19420.499728 eV Total energy + Delta-G solvation = -3406.768954 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.78630 -40.46749 -38.22262 -37.01121 -35.52524 -35.25884 -34.25995 -32.93622 -29.68029 -28.85138 -27.57052 -24.93919 -24.25769 -23.30654 -22.20399 -21.00009 -20.63544 -19.40797 -18.86956 -17.86140 -17.83306 -17.15781 -16.72553 -16.35234 -16.21662 -15.72452 -15.59385 -15.35286 -14.92176 -14.76088 -14.59310 -14.25404 -13.90315 -13.80142 -13.64114 -13.51705 -12.89688 -12.71554 -12.64622 -12.39565 -12.14570 -11.97483 -11.86545 -11.76125 -11.57571 -11.31013 -11.19702 -10.97528 -10.74574 -10.25358 -9.73640 -9.47784 -8.28046 -6.31134 1.37143 1.39543 1.50572 1.59459 1.68325 2.12145 2.20061 2.37206 3.00706 3.08109 3.73613 3.84446 3.94131 3.97988 4.10885 4.22142 4.24650 4.31725 4.47645 4.52284 4.59139 4.61858 4.80328 4.83034 4.84832 4.91578 4.92222 5.03360 5.06863 5.21484 5.43135 5.53240 5.57987 5.58424 5.66445 5.68324 5.93391 6.29207 6.30086 6.76956 7.00051 7.13148 7.33830 7.54985 8.88109 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.025297 B = 0.003349 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.598195 B = 8358.911197 C = 8641.784061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.007 3.993 3 Si 0.943 3.057 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.251 1.251 7 C -0.527 4.527 8 H 0.042 0.958 9 C -0.013 4.013 10 C -0.096 4.096 11 C 0.146 3.854 12 N -0.729 5.729 13 C 0.697 3.303 14 O -0.642 6.642 15 N -0.615 5.615 16 C 0.135 3.865 17 C -0.149 4.149 18 C 0.119 3.881 19 N -0.608 5.608 20 C 0.482 3.518 21 O -0.607 6.607 22 C 0.085 3.915 23 C 0.086 3.914 24 H 0.266 0.734 25 H 0.018 0.982 26 H 0.018 0.982 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.410 0.590 32 H 0.112 0.888 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.023 0.977 36 H 0.114 0.886 37 H 0.067 0.933 38 H 0.152 0.848 39 H 0.120 0.880 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.334 -21.134 -1.074 26.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.767 3.233 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.174 1.174 7 C -0.565 4.565 8 H 0.060 0.940 9 C -0.052 4.052 10 C -0.134 4.134 11 C 0.021 3.979 12 N -0.386 5.386 13 C 0.398 3.602 14 O -0.524 6.524 15 N -0.350 5.350 16 C 0.014 3.986 17 C -0.189 4.189 18 C -0.005 4.005 19 N -0.342 5.342 20 C 0.253 3.747 21 O -0.487 6.487 22 C -0.037 4.037 23 C -0.039 4.039 24 H 0.074 0.926 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.249 0.751 32 H 0.130 0.870 33 H 0.081 0.919 34 H 0.113 0.887 35 H 0.042 0.958 36 H 0.132 0.868 37 H 0.086 0.914 38 H 0.168 0.832 39 H 0.138 0.862 40 H 0.108 0.892 41 H 0.117 0.883 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 17.246 -20.357 -0.730 26.690 hybrid contribution -0.436 0.985 0.222 1.100 sum 16.809 -19.372 -0.508 25.653 Atomic orbital electron populations 1.70045 1.08101 1.28047 1.52834 1.25925 0.95526 1.03212 0.94378 0.85765 0.79498 0.78930 0.79128 1.19293 1.21141 1.17426 1.21453 0.91764 0.93311 1.49932 0.93962 1.19472 0.94166 0.94872 0.96643 1.21453 0.91560 0.97970 1.02432 1.21120 0.94277 0.81704 1.00779 1.45147 1.04972 1.09377 1.79150 1.16204 0.82711 0.83744 0.77526 1.90882 1.56328 1.44961 1.60190 1.46816 1.07765 1.03305 1.77138 1.20650 0.78360 1.02256 0.97360 1.21459 1.01896 0.98422 0.97101 1.21074 0.83358 0.95720 1.00375 1.48333 1.10228 1.62888 1.12733 1.23260 0.94400 0.75806 0.81219 1.90675 1.44636 1.55654 1.57691 1.23200 0.85967 1.04690 0.89865 1.21793 0.94640 0.90815 0.96604 0.92558 0.96410 0.96387 0.91328 0.91363 0.93393 0.92976 0.75127 0.86958 0.91853 0.88673 0.95761 0.86831 0.91436 0.83242 0.86220 0.89221 0.88281 0.86517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.44 13.96 21.45 0.30 -58.14 16 2 C 0.01 0.38 5.47 84.65 0.46 0.84 16 3 Si 0.94 44.11 27.47 68.60 1.88 46.00 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 7 C -0.53 -29.10 9.66 25.60 0.25 -28.85 16 8 H 0.04 2.51 7.99 -2.91 -0.02 2.49 16 9 C -0.01 -0.60 4.04 29.85 0.12 -0.48 16 10 C -0.10 -3.26 5.27 30.59 0.16 -3.10 16 11 C 0.15 4.53 5.67 86.38 0.49 5.02 16 12 N -0.73 -17.54 5.40 -478.54 -2.59 -20.12 16 13 C 0.70 18.93 8.27 179.05 1.48 20.41 16 14 O -0.64 -24.38 15.78 -4.01 -0.06 -24.44 16 15 N -0.61 -10.54 2.47 -850.34 -2.10 -12.64 16 16 C 0.14 2.13 5.70 84.23 0.48 2.61 16 17 C -0.15 -2.49 5.64 29.04 0.16 -2.33 16 18 C 0.12 1.50 5.33 87.21 0.47 1.96 16 19 N -0.61 -8.23 2.50 -835.02 -2.09 -10.32 16 20 C 0.48 9.57 11.43 129.79 1.48 11.06 16 21 O -0.61 -18.39 16.67 -3.02 -0.05 -18.44 16 22 C 0.09 0.52 6.82 86.38 0.59 1.10 16 23 C 0.09 0.61 4.97 87.37 0.43 1.04 16 24 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 25 H 0.02 0.79 7.20 -2.39 -0.02 0.78 16 26 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 27 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 28 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.05 1.63 8.14 -2.38 -0.02 1.62 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.41 6.84 6.22 -92.71 -0.58 6.27 16 32 H 0.11 0.88 8.06 -2.38 -0.02 0.86 16 33 H 0.06 1.41 7.12 -2.39 -0.02 1.39 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.02 0.64 7.89 -2.39 -0.02 0.62 16 36 H 0.11 0.59 7.58 -2.39 -0.02 0.57 16 37 H 0.07 1.11 7.41 -2.39 -0.02 1.10 16 38 H 0.15 2.04 7.93 -2.91 -0.02 2.01 16 39 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 40 H 0.09 0.55 7.87 -2.39 -0.02 0.53 16 41 H 0.10 0.52 6.33 -2.39 -0.02 0.50 16 42 H 0.12 0.17 7.73 -2.39 -0.02 0.15 16 Total: -1.00 -83.81 337.34 2.25 -81.56 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 0.38 Total: 7.27 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 6.58 Total: 9.28 kcal Atomic # 7 Polarization: -94.74 SS G_CDS: -6.48 Total: -101.22 kcal Atomic # 8 Polarization: -42.77 SS G_CDS: -0.11 Total: -42.88 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.88 Total: 46.00 kcal Total: -83.81 2.25 -81.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119087321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.209 kcal (2) G-P(sol) polarization free energy of solvation -83.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds