Wall clock time and date at job start Tue Mar 31 2020 06:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46830 * 2 1 4 4 C 1.52995 * 109.46758 * 119.99415 * 2 1 3 5 5 C 1.52993 * 109.47245 * 239.99872 * 2 1 3 6 6 H 1.09005 * 112.73575 * 181.97777 * 5 2 1 7 7 C 1.53495 * 113.46566 * 312.79190 * 5 2 1 8 8 C 1.53502 * 83.34300 * 140.85281 * 7 5 2 9 9 N 1.47060 * 113.47095 * 51.22879 * 5 2 1 10 10 C 1.34778 * 136.05684 * 38.13741 * 9 5 2 11 11 O 1.21595 * 120.00004 * 355.31018 * 10 9 5 12 12 N 1.34774 * 120.00418 * 175.31454 * 10 9 5 13 13 C 1.46496 * 120.00401 * 180.02562 * 12 10 9 14 14 C 1.50705 * 109.47227 * 180.02562 * 13 12 10 15 15 O 1.21296 * 119.99961 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00025 * 179.97438 * 14 13 12 17 17 C 1.37093 * 120.00018 * 179.97438 * 16 14 13 18 18 H 1.07998 * 120.00035 * 359.97438 * 17 16 14 19 19 C 1.38953 * 119.99983 * 179.97438 * 17 16 14 20 20 N 1.31407 * 120.00171 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99935 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47259 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46995 * 119.99825 * 21 19 17 24 24 H 1.48501 * 109.47065 * 239.99850 * 21 19 17 25 25 H 1.08999 * 109.47227 * 67.08731 * 1 2 3 26 26 H 1.08996 * 109.47326 * 187.08280 * 1 2 3 27 27 H 1.09001 * 109.47498 * 307.08558 * 1 2 3 28 28 H 1.08998 * 109.47279 * 88.63417 * 3 2 1 29 29 H 1.09000 * 109.46942 * 208.63532 * 3 2 1 30 30 H 1.09001 * 109.46966 * 328.63075 * 3 2 1 31 31 H 1.08996 * 109.47465 * 60.00241 * 4 2 1 32 32 H 1.09002 * 109.47213 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.47814 * 300.00064 * 4 2 1 34 34 H 1.09001 * 114.21264 * 254.43507 * 7 5 2 35 35 H 1.09001 * 114.20704 * 27.26643 * 7 5 2 36 36 H 1.09006 * 113.46388 * 219.15453 * 8 7 5 37 37 H 1.09000 * 113.46600 * 88.71338 * 8 7 5 38 38 H 0.97005 * 119.99687 * 359.97438 * 12 10 9 39 39 H 1.08999 * 109.46768 * 299.99673 * 13 12 10 40 40 H 1.08996 * 109.47082 * 59.99883 * 13 12 10 41 41 H 0.97004 * 119.99835 * 0.02562 * 16 14 13 42 42 H 0.96997 * 120.00438 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 2.0400 -0.7212 -1.2492 6 1 3.1277 -0.7824 -1.2857 7 6 1.3419 -2.0636 -1.5077 8 6 1.4201 -1.6182 -2.9746 9 7 1.4389 -0.2274 -2.4971 10 6 1.0688 0.9722 -2.9877 11 8 1.1426 1.9641 -2.2883 12 7 0.6169 1.0723 -4.2535 13 6 0.2152 2.3762 -4.7870 14 6 -0.2483 2.2149 -6.2118 15 8 -0.2431 1.1186 -6.7309 16 7 -0.6686 3.2887 -6.9094 17 6 -1.0898 3.1420 -8.2058 18 1 -1.0844 2.1661 -8.6682 19 6 -1.5236 4.2491 -8.9248 20 7 -1.5306 5.4366 -8.3621 21 14 -2.0981 4.0491 -10.6910 22 1 -1.9948 2.6215 -11.0865 23 1 -3.5106 4.4929 -10.8053 24 1 -1.2462 4.8739 -11.5850 25 1 -0.3633 0.4001 -0.9466 26 1 -0.3634 -1.0198 0.1267 27 1 -0.3634 0.6197 0.8198 28 1 2.1379 1.7933 1.0273 29 1 3.0114 1.4845 -0.4925 30 1 1.3337 2.0776 -0.5350 31 1 1.6766 -1.7488 1.2494 32 1 3.1299 -0.7208 1.2496 33 1 1.6766 -0.2073 2.1393 34 1 1.9508 -2.9367 -1.2727 35 1 0.3280 -2.1236 -1.1122 36 1 0.5294 -1.8670 -3.5518 37 1 2.3425 -1.9193 -3.4711 38 1 0.5583 0.2810 -4.8116 39 1 -0.5981 2.7803 -4.1843 40 1 1.0644 3.0587 -4.7558 41 1 -0.6724 4.1655 -6.4945 42 1 -1.8331 6.2094 -8.8641 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123557607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:16 Heat of formation + Delta-G solvation = -28.091060 kcal Electronic energy + Delta-G solvation = -22848.464840 eV Core-core repulsion = 19444.153600 eV Total energy + Delta-G solvation = -3404.311240 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.97177 -38.76469 -37.70574 -35.64307 -34.33226 -33.51641 -31.37503 -29.91507 -27.51383 -27.33703 -26.67574 -25.73976 -24.38339 -22.08622 -20.19282 -19.60060 -18.79218 -18.04567 -17.58998 -16.15688 -16.07685 -15.52541 -15.08554 -14.80209 -14.42724 -14.16278 -14.08809 -13.91030 -13.55827 -13.24542 -13.02028 -12.60787 -12.45805 -12.16086 -12.07335 -11.97576 -11.76423 -11.63576 -11.62463 -11.31351 -11.13811 -10.68541 -10.61271 -10.40446 -10.31359 -10.16434 -9.63811 -9.37029 -8.87598 -8.60787 -8.39860 -8.08849 -6.50564 -3.92477 2.59037 3.10710 3.22753 3.29482 3.44476 3.76654 4.00295 4.15031 4.27698 4.64015 4.81264 4.83962 4.91721 4.97949 5.11276 5.18311 5.31016 5.38636 5.45023 5.50003 5.57570 5.68955 5.73858 5.79869 5.90977 5.94898 6.01961 6.04138 6.10226 6.13974 6.17809 6.29692 6.43236 6.61664 7.09626 7.45808 7.47235 7.93928 8.29719 8.46624 8.94721 9.05892 9.40896 9.88850 10.66480 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.039327 B = 0.003180 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.811980 B = 8803.998917 C = 9263.243484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.070 4.070 3 C -0.152 4.152 4 C -0.137 4.137 5 C 0.165 3.835 6 H 0.086 0.914 7 C -0.156 4.156 8 C 0.097 3.903 9 N -0.661 5.661 10 C 0.733 3.267 11 O -0.583 6.583 12 N -0.723 5.723 13 C 0.130 3.870 14 C 0.429 3.571 15 O -0.598 6.598 16 N -0.550 5.550 17 C -0.304 4.304 18 H 0.105 0.895 19 C 0.025 3.975 20 N -0.895 5.895 21 Si 0.932 3.068 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.061 0.939 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.036 0.964 29 H 0.042 0.958 30 H 0.107 0.893 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.405 0.595 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.396 0.604 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.074 -12.224 15.822 20.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.071 4.071 3 C -0.209 4.209 4 C -0.195 4.195 5 C 0.061 3.939 6 H 0.103 0.897 7 C -0.194 4.194 8 C -0.026 4.026 9 N -0.401 5.401 10 C 0.437 3.563 11 O -0.462 6.462 12 N -0.380 5.380 13 C 0.002 3.998 14 C 0.215 3.785 15 O -0.485 6.485 16 N -0.185 5.185 17 C -0.433 4.433 18 H 0.123 0.877 19 C -0.178 4.178 20 N -0.535 5.535 21 Si 0.759 3.241 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.206 1.206 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.125 0.875 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.118 0.882 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.242 0.758 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.230 0.770 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.980 -11.765 15.757 20.554 hybrid contribution -0.198 0.210 -1.025 1.064 sum 5.782 -11.556 14.733 19.597 Atomic orbital electron populations 1.21871 0.94272 1.00658 1.02329 1.20662 0.96249 0.96725 0.93476 1.22349 1.02714 0.95534 1.00301 1.21837 1.00785 0.99952 0.96876 1.22596 0.97063 0.90154 0.84063 0.89662 1.23611 1.02674 0.96917 0.96167 1.22883 1.02275 0.80455 0.96999 1.48708 1.66559 1.04814 1.19988 1.15209 0.78002 0.81620 0.81467 1.90739 1.62602 1.35079 1.57786 1.44784 1.69495 1.11614 1.12125 1.20766 1.00685 0.84567 0.93800 1.19783 0.85345 0.85770 0.87625 1.90490 1.61073 1.25810 1.71087 1.41793 1.55290 1.08623 1.12769 1.19771 1.39668 0.96308 0.87600 0.87671 1.25323 0.97236 0.94612 1.00584 1.69620 1.46735 0.99057 1.38087 0.85763 0.78205 0.78723 0.81426 1.19150 1.20620 1.20619 0.92029 0.93198 0.93052 0.94530 0.93835 0.87518 0.92739 0.92796 0.92492 0.89558 0.88234 0.90445 0.90138 0.75807 0.90108 0.90084 0.77026 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 7.52 37.16 0.28 -1.24 16 2 C -0.07 -0.75 0.61 -154.51 -0.09 -0.85 16 3 C -0.15 -2.00 7.68 37.16 0.29 -1.71 16 4 C -0.14 -1.11 8.23 37.16 0.31 -0.81 16 5 C 0.17 1.70 3.09 -72.40 -0.22 1.47 16 6 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 7 C -0.16 -1.19 7.39 -26.21 -0.19 -1.39 16 8 C 0.10 0.93 8.29 -8.50 -0.07 0.86 16 9 N -0.66 -8.56 2.95 -183.21 -0.54 -9.10 16 10 C 0.73 12.26 7.69 -86.92 -0.67 11.59 16 11 O -0.58 -10.93 12.05 5.28 0.06 -10.86 16 12 N -0.72 -12.73 5.53 -66.41 -0.37 -13.09 16 13 C 0.13 2.48 6.15 -5.19 -0.03 2.44 16 14 C 0.43 10.00 7.85 -10.98 -0.09 9.91 16 15 O -0.60 -15.52 15.24 5.54 0.08 -15.43 16 16 N -0.55 -13.78 5.29 -10.96 -0.06 -13.84 16 17 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 18 H 0.11 3.00 7.16 -52.49 -0.38 2.63 16 19 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 20 N -0.89 -24.04 13.05 55.50 0.72 -23.32 16 21 Si 0.93 20.63 29.55 -169.99 -5.02 15.61 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 H 0.06 0.87 6.13 -51.93 -0.32 0.55 16 26 H 0.05 0.47 6.49 -51.93 -0.34 0.13 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.43 7.84 -51.93 -0.41 0.02 16 29 H 0.04 0.60 7.86 -51.93 -0.41 0.19 16 30 H 0.11 1.74 4.70 -52.34 -0.25 1.50 16 31 H 0.05 0.37 7.87 -51.93 -0.41 -0.03 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.46 8.11 -51.93 -0.42 0.04 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.10 0.78 5.95 -51.93 -0.31 0.47 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.40 7.13 7.16 -40.82 -0.29 6.84 16 39 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.40 9.55 7.90 -40.82 -0.32 9.23 16 42 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 335.26 15.07 5.05 5.05 Total: -1.00 -30.96 335.26 -7.16 -38.12 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -6.36 Total: 14.48 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: -0.74 Total: 12.38 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: -0.24 Total: -59.35 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: 0.15 Total: -26.30 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.96 -7.16 -38.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123557607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.033 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds