Wall clock time and date at job start Tue Mar 31 2020 06:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46830 * 2 1 4 4 C 1.52995 * 109.46758 * 119.99415 * 2 1 3 5 5 C 1.52993 * 109.47245 * 239.99872 * 2 1 3 6 6 H 1.09005 * 112.73575 * 181.97777 * 5 2 1 7 7 C 1.53495 * 113.46566 * 312.79190 * 5 2 1 8 8 C 1.53502 * 83.34300 * 140.85281 * 7 5 2 9 9 N 1.47060 * 113.47095 * 51.22879 * 5 2 1 10 10 C 1.34778 * 136.05684 * 38.13741 * 9 5 2 11 11 O 1.21595 * 120.00004 * 355.31018 * 10 9 5 12 12 N 1.34774 * 120.00418 * 175.31454 * 10 9 5 13 13 C 1.46496 * 120.00401 * 180.02562 * 12 10 9 14 14 C 1.50705 * 109.47227 * 180.02562 * 13 12 10 15 15 O 1.21296 * 119.99961 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00025 * 179.97438 * 14 13 12 17 17 C 1.37093 * 120.00018 * 179.97438 * 16 14 13 18 18 H 1.07998 * 120.00035 * 359.97438 * 17 16 14 19 19 C 1.38953 * 119.99983 * 179.97438 * 17 16 14 20 20 N 1.31407 * 120.00171 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99935 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47259 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46995 * 119.99825 * 21 19 17 24 24 H 1.48501 * 109.47065 * 239.99850 * 21 19 17 25 25 H 1.08999 * 109.47227 * 67.08731 * 1 2 3 26 26 H 1.08996 * 109.47326 * 187.08280 * 1 2 3 27 27 H 1.09001 * 109.47498 * 307.08558 * 1 2 3 28 28 H 1.08998 * 109.47279 * 88.63417 * 3 2 1 29 29 H 1.09000 * 109.46942 * 208.63532 * 3 2 1 30 30 H 1.09001 * 109.46966 * 328.63075 * 3 2 1 31 31 H 1.08996 * 109.47465 * 60.00241 * 4 2 1 32 32 H 1.09002 * 109.47213 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.47814 * 300.00064 * 4 2 1 34 34 H 1.09001 * 114.21264 * 254.43507 * 7 5 2 35 35 H 1.09001 * 114.20704 * 27.26643 * 7 5 2 36 36 H 1.09006 * 113.46388 * 219.15453 * 8 7 5 37 37 H 1.09000 * 113.46600 * 88.71338 * 8 7 5 38 38 H 0.97005 * 119.99687 * 359.97438 * 12 10 9 39 39 H 1.08999 * 109.46768 * 299.99673 * 13 12 10 40 40 H 1.08996 * 109.47082 * 59.99883 * 13 12 10 41 41 H 0.97004 * 119.99835 * 0.02562 * 16 14 13 42 42 H 0.96997 * 120.00438 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 2.0400 -0.7212 -1.2492 6 1 3.1277 -0.7824 -1.2857 7 6 1.3419 -2.0636 -1.5077 8 6 1.4201 -1.6182 -2.9746 9 7 1.4389 -0.2274 -2.4971 10 6 1.0688 0.9722 -2.9877 11 8 1.1426 1.9641 -2.2883 12 7 0.6169 1.0723 -4.2535 13 6 0.2152 2.3762 -4.7870 14 6 -0.2483 2.2149 -6.2118 15 8 -0.2431 1.1186 -6.7309 16 7 -0.6686 3.2887 -6.9094 17 6 -1.0898 3.1420 -8.2058 18 1 -1.0844 2.1661 -8.6682 19 6 -1.5236 4.2491 -8.9248 20 7 -1.5306 5.4366 -8.3621 21 14 -2.0981 4.0491 -10.6910 22 1 -1.9948 2.6215 -11.0865 23 1 -3.5106 4.4929 -10.8053 24 1 -1.2462 4.8739 -11.5850 25 1 -0.3633 0.4001 -0.9466 26 1 -0.3634 -1.0198 0.1267 27 1 -0.3634 0.6197 0.8198 28 1 2.1379 1.7933 1.0273 29 1 3.0114 1.4845 -0.4925 30 1 1.3337 2.0776 -0.5350 31 1 1.6766 -1.7488 1.2494 32 1 3.1299 -0.7208 1.2496 33 1 1.6766 -0.2073 2.1393 34 1 1.9508 -2.9367 -1.2727 35 1 0.3280 -2.1236 -1.1122 36 1 0.5294 -1.8670 -3.5518 37 1 2.3425 -1.9193 -3.4711 38 1 0.5583 0.2810 -4.8116 39 1 -0.5981 2.7803 -4.1843 40 1 1.0644 3.0587 -4.7558 41 1 -0.6724 4.1655 -6.4945 42 1 -1.8331 6.2094 -8.8641 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123557607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:15 Heat of formation + Delta-G solvation = -49.661028 kcal Electronic energy + Delta-G solvation = -22849.400184 eV Core-core repulsion = 19444.153600 eV Total energy + Delta-G solvation = -3405.246584 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.94949 -40.43191 -39.14765 -36.56544 -36.18736 -35.07415 -33.39000 -31.03520 -28.86415 -28.18123 -27.76922 -26.65467 -26.14374 -23.04132 -21.38371 -21.21770 -20.20770 -19.80338 -18.61840 -17.57827 -17.19481 -17.06458 -16.62732 -16.39029 -15.98341 -15.49969 -15.30993 -15.15687 -14.87011 -14.16571 -14.14163 -13.90937 -13.57083 -13.53535 -13.33624 -13.28652 -12.92356 -12.90204 -12.72248 -12.45993 -12.45516 -12.11784 -12.03983 -11.59407 -11.56798 -11.48629 -10.99174 -10.63219 -10.55125 -10.22922 -10.10322 -9.46802 -8.52269 -6.02684 1.34171 1.40737 1.46872 1.57338 1.88181 2.20057 2.27116 2.86681 3.14822 3.17451 3.49517 3.82553 4.01154 4.02249 4.16507 4.23730 4.36853 4.42571 4.44789 4.58396 4.64401 4.66359 4.78665 4.80483 4.90629 4.96170 5.02943 5.16441 5.17968 5.23920 5.29735 5.36554 5.37534 5.47344 5.56978 5.84547 5.93750 6.28825 6.46894 7.02115 7.08234 7.41507 7.68345 7.92829 8.64991 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.039327 B = 0.003180 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.811980 B = 8803.998917 C = 9263.243484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.071 4.071 3 C -0.147 4.147 4 C -0.130 4.130 5 C 0.155 3.845 6 H 0.097 0.903 7 C -0.132 4.132 8 C 0.090 3.910 9 N -0.667 5.667 10 C 0.726 3.274 11 O -0.610 6.610 12 N -0.728 5.728 13 C 0.146 3.854 14 C 0.434 3.566 15 O -0.625 6.625 16 N -0.559 5.559 17 C -0.337 4.337 18 H 0.086 0.914 19 C -0.011 4.011 20 N -0.916 5.916 21 Si 0.998 3.002 22 H -0.270 1.270 23 H -0.271 1.271 24 H -0.271 1.271 25 H 0.028 0.972 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.044 0.956 29 H 0.030 0.970 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.123 0.877 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.404 0.596 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.399 0.601 42 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.529 -14.040 16.584 22.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.071 4.071 3 C -0.204 4.204 4 C -0.188 4.188 5 C 0.053 3.947 6 H 0.115 0.885 7 C -0.169 4.169 8 C -0.032 4.032 9 N -0.406 5.406 10 C 0.430 3.570 11 O -0.491 6.491 12 N -0.385 5.385 13 C 0.017 3.983 14 C 0.221 3.779 15 O -0.513 6.513 16 N -0.194 5.194 17 C -0.466 4.466 18 H 0.104 0.896 19 C -0.212 4.212 20 N -0.556 5.556 21 Si 0.821 3.179 22 H -0.194 1.194 23 H -0.196 1.196 24 H -0.196 1.196 25 H 0.047 0.953 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.141 0.859 35 H 0.118 0.882 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.241 0.759 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.233 0.767 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.453 -13.612 16.559 22.386 hybrid contribution -0.308 0.749 -1.188 1.438 sum 6.145 -12.863 15.371 20.964 Atomic orbital electron populations 1.21819 0.94849 1.01672 1.00312 1.20683 0.95718 0.95441 0.95284 1.22229 1.01081 0.97083 1.00010 1.21780 1.01267 1.00634 0.95089 1.22942 0.97909 0.91258 0.82623 0.88542 1.23556 1.02974 0.96478 0.93904 1.23188 1.03078 0.78257 0.98668 1.48914 1.65522 1.04770 1.21352 1.15383 0.78084 0.82725 0.80830 1.90754 1.63636 1.36589 1.58136 1.44743 1.70223 1.10773 1.12747 1.20523 1.01051 0.85810 0.90902 1.20417 0.83796 0.84860 0.88866 1.90461 1.61802 1.26783 1.72220 1.41839 1.55914 1.09161 1.12527 1.19773 1.41838 0.96058 0.88935 0.89610 1.26148 0.96619 0.94013 1.04378 1.69686 1.46744 0.99617 1.39602 0.84800 0.78128 0.78515 0.76455 1.19395 1.19582 1.19578 0.95326 0.90919 0.93449 0.93677 0.95041 0.90895 0.90657 0.92000 0.92525 0.85872 0.88179 0.90727 0.88431 0.75885 0.89381 0.89345 0.76730 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 7.52 71.98 0.54 -2.25 16 2 C -0.07 -1.39 0.61 -52.18 -0.03 -1.43 16 3 C -0.15 -3.87 7.68 71.98 0.55 -3.31 16 4 C -0.13 -1.72 8.23 71.98 0.59 -1.12 16 5 C 0.16 2.85 3.09 41.79 0.13 2.97 16 6 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 7 C -0.13 -1.54 7.39 30.93 0.23 -1.31 16 8 C 0.09 1.52 8.29 83.18 0.69 2.21 16 9 N -0.67 -16.68 2.95 -851.81 -2.51 -19.18 16 10 C 0.73 24.55 7.69 179.05 1.38 25.93 16 11 O -0.61 -23.56 12.05 -4.02 -0.05 -23.61 16 12 N -0.73 -25.98 5.53 -482.30 -2.67 -28.65 16 13 C 0.15 5.65 6.15 85.64 0.53 6.18 16 14 C 0.43 20.67 7.85 87.66 0.69 21.36 16 15 O -0.62 -33.13 15.24 -3.08 -0.05 -33.17 16 16 N -0.56 -28.71 5.29 -306.98 -1.62 -30.34 16 17 C -0.34 -18.82 9.68 84.04 0.81 -18.01 16 18 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 19 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 20 N -0.92 -49.25 13.05 21.66 0.28 -48.96 16 21 Si 1.00 42.10 29.55 68.60 2.03 44.13 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 23 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 24 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 25 H 0.03 0.80 6.13 -2.39 -0.01 0.79 16 26 H 0.07 1.20 6.49 -2.39 -0.02 1.18 16 27 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.04 1.05 7.84 -2.39 -0.02 1.03 16 29 H 0.03 0.86 7.86 -2.39 -0.02 0.84 16 30 H 0.07 2.48 4.70 -8.84 -0.04 2.44 16 31 H 0.07 0.71 7.87 -2.39 -0.02 0.69 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.77 8.11 -2.39 -0.02 0.75 16 34 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.10 1.21 5.95 -2.39 -0.01 1.20 16 36 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.40 14.42 7.16 -92.70 -0.66 13.76 16 39 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 40 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 41 H 0.40 19.73 7.90 -92.71 -0.73 18.99 16 42 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -68.41 335.26 1.61 -66.81 By element: Atomic # 1 Polarization: 42.26 SS G_CDS: -0.38 Total: 41.88 kcal Atomic # 6 Polarization: 24.53 SS G_CDS: 6.57 Total: 31.11 kcal Atomic # 7 Polarization: -120.62 SS G_CDS: -6.52 Total: -127.14 kcal Atomic # 8 Polarization: -56.69 SS G_CDS: -0.10 Total: -56.78 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -68.41 1.61 -66.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123557607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.147 kcal (2) G-P(sol) polarization free energy of solvation -68.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds