Wall clock time and date at job start Tue Mar 31 2020 06:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 119.99507 * 2 1 4 4 C 1.34769 * 120.00210 * 180.02562 * 2 1 3 5 5 O 1.21581 * 120.00388 * 0.02562 * 4 2 1 6 6 N 1.34783 * 119.99900 * 180.02562 * 4 2 1 7 7 C 1.46502 * 120.00055 * 180.02562 * 6 4 2 8 8 H 1.09001 * 109.52160 * 325.08422 * 7 6 4 9 9 C 1.53038 * 109.49621 * 204.99895 * 7 6 4 10 10 C 1.53045 * 109.53272 * 178.68518 * 9 7 6 11 11 C 1.53188 * 109.31531 * 61.36807 * 10 9 7 12 12 N 1.46927 * 108.77258 * 305.35881 * 11 10 9 13 13 C 1.34775 * 120.63171 * 233.58513 * 12 11 10 14 14 O 1.21283 * 119.99917 * 180.02562 * 13 12 11 15 15 C 1.50703 * 120.00072 * 0.02562 * 13 12 11 16 16 C 1.50701 * 109.47151 * 180.02562 * 15 13 12 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 13 18 18 C 1.37871 * 119.99694 * 180.27762 * 16 15 13 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 15 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 15 21 21 H 1.48504 * 109.47266 * 60.00049 * 20 18 16 22 22 H 1.48504 * 109.46970 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47383 * 299.99456 * 20 18 16 24 24 C 1.46928 * 118.73671 * 53.86376 * 12 11 10 25 25 H 1.09007 * 109.46964 * 239.99276 * 1 2 3 26 26 H 1.08999 * 109.47809 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47171 * 120.00154 * 1 2 3 28 28 H 1.08995 * 109.47375 * 270.00118 * 3 2 1 29 29 H 1.09000 * 109.47352 * 30.00408 * 3 2 1 30 30 H 1.09003 * 109.46705 * 149.99708 * 3 2 1 31 31 H 0.96995 * 120.00138 * 359.97438 * 6 4 2 32 32 H 1.08995 * 109.45811 * 58.66524 * 9 7 6 33 33 H 1.09000 * 109.46172 * 298.70007 * 9 7 6 34 34 H 1.08998 * 109.49682 * 301.41056 * 10 9 7 35 35 H 1.09011 * 109.51747 * 181.33595 * 10 9 7 36 36 H 1.08999 * 109.58377 * 185.57850 * 11 10 9 37 37 H 1.08997 * 109.70654 * 65.21759 * 11 10 9 38 38 H 1.09000 * 109.47088 * 59.99268 * 15 13 12 39 39 H 1.09007 * 109.46560 * 299.99774 * 15 13 12 40 40 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.58617 * 65.92608 * 24 12 11 42 42 H 1.08993 * 109.58620 * 186.34513 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1388 -1.1671 -0.0005 5 8 1.5311 -2.2201 -0.0015 6 7 3.4867 -1.1670 0.0000 7 6 4.2193 -2.4357 -0.0011 8 1 3.6717 -3.1731 0.5859 9 6 5.6067 -2.2249 0.6093 10 6 6.3606 -3.5565 0.6386 11 6 6.5356 -4.0712 -0.7936 12 7 5.2161 -4.1390 -1.4363 13 6 4.7903 -5.2810 -2.0114 14 8 3.6991 -5.3240 -2.5392 15 6 5.6699 -6.5046 -1.9988 16 6 4.9661 -7.6365 -2.7022 17 1 3.9803 -7.4850 -3.1165 18 6 5.5782 -8.8670 -2.8112 19 7 6.7785 -9.0516 -2.3064 20 14 4.7026 -10.2723 -3.6762 21 1 4.4177 -9.8875 -5.0820 22 1 5.5675 -11.4794 -3.6596 23 1 3.4271 -10.5670 -2.9753 24 6 4.3723 -2.9362 -1.4455 25 1 -0.3633 -0.5140 0.8900 26 1 -0.3635 1.0276 0.0005 27 1 -0.3634 -0.5139 -0.8900 28 1 2.3790 1.5835 -1.0276 29 1 1.6083 2.0284 0.5139 30 1 3.1498 1.1385 0.5139 31 1 3.9716 -0.3270 0.0004 32 1 5.5024 -1.8442 1.6253 33 1 6.1628 -1.5060 0.0076 34 1 5.7929 -4.2832 1.2196 35 1 7.3397 -3.4107 1.0951 36 1 6.9832 -5.0649 -0.7725 37 1 7.1797 -3.3920 -1.3521 38 1 5.8793 -6.7909 -0.9682 39 1 6.6060 -6.2844 -2.5121 40 1 7.2089 -9.9174 -2.3829 41 1 4.8428 -2.1644 -2.0547 42 1 3.3922 -3.1807 -1.8548 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143199059.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:23 Heat of formation + Delta-G solvation = -59.663450 kcal Electronic energy + Delta-G solvation = -22936.326246 eV Core-core repulsion = 19530.645924 eV Total energy + Delta-G solvation = -3405.680322 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.43966 -39.21469 -37.01751 -35.58827 -34.44820 -32.90425 -31.94460 -30.23947 -28.66422 -28.00473 -25.97510 -25.21730 -23.30877 -22.62872 -20.76809 -20.13547 -18.38441 -18.11067 -16.64908 -16.47221 -16.11016 -15.70317 -15.17972 -14.84982 -14.66518 -14.28117 -14.18053 -13.95556 -13.50394 -13.36510 -12.98541 -12.89615 -12.76820 -12.60156 -12.39403 -12.18709 -12.02847 -11.48292 -11.16274 -10.97659 -10.89387 -10.72228 -10.55799 -10.49867 -10.16490 -9.89771 -9.31510 -9.16605 -8.81391 -8.52983 -8.38053 -7.99471 -6.00918 -3.99748 2.46422 3.13741 3.42312 3.43407 3.48973 3.57720 3.76236 3.91054 4.53328 4.66196 4.68675 4.87704 4.91616 4.97056 5.02760 5.20650 5.25454 5.37422 5.40568 5.41851 5.53300 5.60575 5.62826 5.80744 5.87971 6.00242 6.06345 6.10036 6.20030 6.31803 6.38835 6.49621 6.72598 7.09137 7.25690 7.37163 7.79387 8.01619 8.04430 8.44090 8.52916 9.10904 9.28842 9.65147 11.11512 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.024548 B = 0.003812 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.328468 B = 7343.837032 C = 8222.299301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.642 5.642 3 C 0.081 3.919 4 C 0.701 3.299 5 O -0.575 6.575 6 N -0.739 5.739 7 C 0.148 3.852 8 H 0.093 0.907 9 C -0.123 4.123 10 C -0.131 4.131 11 C 0.107 3.893 12 N -0.627 5.627 13 C 0.516 3.484 14 O -0.539 6.539 15 C 0.010 3.990 16 C -0.508 4.508 17 H 0.074 0.926 18 C 0.055 3.945 19 N -0.902 5.902 20 Si 0.902 3.098 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.275 1.275 24 C 0.104 3.896 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.393 0.607 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.047 0.953 40 H 0.262 0.738 41 H 0.055 0.945 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.642 23.476 8.411 24.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.382 5.382 3 C -0.063 4.063 4 C 0.402 3.598 5 O -0.451 6.451 6 N -0.395 5.395 7 C 0.042 3.958 8 H 0.111 0.889 9 C -0.161 4.161 10 C -0.170 4.170 11 C -0.016 4.016 12 N -0.365 5.365 13 C 0.308 3.692 14 O -0.414 6.414 15 C -0.030 4.030 16 C -0.546 4.546 17 H 0.092 0.908 18 C -0.145 4.145 19 N -0.542 5.542 20 Si 0.729 3.271 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.201 1.201 24 C -0.021 4.021 25 H 0.077 0.923 26 H 0.091 0.909 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.229 0.771 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.583 22.491 8.125 24.052 hybrid contribution -0.018 -0.100 -0.363 0.377 sum -2.601 22.391 7.761 23.840 Atomic orbital electron populations 1.21466 0.77736 1.01722 1.02538 1.46938 1.07079 1.04790 1.79352 1.21738 0.97027 0.85803 1.01721 1.15913 0.81990 0.83797 0.78091 1.91005 1.67582 1.29755 1.56753 1.45276 1.04584 1.09470 1.80218 1.21335 0.91940 0.84943 0.97560 0.88906 1.21785 0.94692 0.98673 1.00943 1.21897 1.00751 0.96429 0.97923 1.21691 0.84761 1.03334 0.91812 1.48348 1.17652 1.11364 1.59088 1.22091 0.87825 0.83971 0.75343 1.90548 1.22814 1.83698 1.44367 1.19234 0.95110 0.89164 0.99447 1.21170 1.03621 0.94283 1.35550 0.90769 1.24985 0.94989 0.98767 0.95786 1.69942 1.13985 1.24140 1.46161 0.86491 0.79444 0.80882 0.80251 1.20139 1.21386 1.20096 1.21834 0.97562 0.87468 0.95235 0.92296 0.90887 0.92127 0.92651 0.90831 0.91612 0.77132 0.91383 0.91433 0.90924 0.90293 0.88253 0.92103 0.93430 0.93512 0.92906 0.92681 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.98 10.16 59.84 0.61 1.59 16 2 N -0.64 -6.60 3.27 -195.34 -0.64 -7.24 16 3 C 0.08 0.45 10.17 59.85 0.61 1.06 16 4 C 0.70 9.99 8.25 -86.92 -0.72 9.27 16 5 O -0.57 -11.27 16.01 5.29 0.08 -11.19 16 6 N -0.74 -8.48 4.95 -58.34 -0.29 -8.77 16 7 C 0.15 2.02 2.62 -67.59 -0.18 1.85 16 8 H 0.09 1.58 7.58 -51.93 -0.39 1.19 16 9 C -0.12 -1.23 5.35 -26.69 -0.14 -1.38 16 10 C -0.13 -1.49 6.08 -26.61 -0.16 -1.65 16 11 C 0.11 1.55 6.34 -3.71 -0.02 1.53 16 12 N -0.63 -11.75 2.97 -172.51 -0.51 -12.26 16 13 C 0.52 12.59 7.69 -10.98 -0.08 12.51 16 14 O -0.54 -15.22 14.87 5.56 0.08 -15.14 16 15 C 0.01 0.25 3.81 -29.03 -0.11 0.14 16 16 C -0.51 -15.23 8.92 -34.44 -0.31 -15.54 16 17 H 0.07 2.34 6.75 -52.49 -0.35 1.98 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 20 Si 0.90 22.74 29.54 -169.99 -5.02 17.72 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 24 C 0.10 1.74 6.04 -3.49 -0.02 1.72 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.40 7.79 -51.93 -0.40 0.00 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.27 7.92 -51.93 -0.41 -0.14 16 30 H 0.07 0.29 6.36 -51.93 -0.33 -0.04 16 31 H 0.39 3.09 6.33 -40.82 -0.26 2.83 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 36 H 0.10 1.58 5.93 -51.93 -0.31 1.27 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.05 1.25 7.69 -51.93 -0.40 0.85 16 39 H 0.05 1.22 7.94 -51.93 -0.41 0.81 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.09 1.96 7.00 -51.93 -0.36 1.60 16 LS Contribution 340.00 15.07 5.12 5.12 Total: -1.00 -37.81 340.00 -7.64 -45.45 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -6.58 Total: -0.29 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: -0.63 Total: 12.61 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.70 Total: -54.28 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: 0.17 Total: -26.33 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -37.81 -7.64 -45.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143199059.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.218 kcal (2) G-P(sol) polarization free energy of solvation -37.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds