Wall clock time and date at job start Tue Mar 31 2020 06:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32155 * 125.87458 * 2 1 4 4 C 1.47486 * 111.06645 * 179.97438 * 3 2 1 5 5 C 1.39780 * 131.88220 * 180.33969 * 4 3 2 6 6 C 1.37949 * 120.05543 * 180.18130 * 5 4 3 7 7 C 1.38239 * 120.46160 * 359.44591 * 6 5 4 8 8 C 1.39138 * 120.01783 * 0.28059 * 7 6 5 9 9 N 1.39692 * 120.09933 * 180.02562 * 8 7 6 10 10 C 1.46500 * 120.00026 * 359.97438 * 9 8 7 11 11 H 1.09005 * 109.41621 * 324.86276 * 10 9 8 12 12 C 1.52954 * 109.41384 * 84.65320 * 10 9 8 13 13 C 1.53227 * 109.40631 * 183.70335 * 12 10 9 14 14 C 1.51265 * 108.53861 * 305.37110 * 13 12 10 15 15 C 1.37882 * 120.85244 * 231.32807 * 14 13 12 16 16 N 1.31510 * 119.99831 * 180.02562 * 15 14 13 17 17 Si 1.86799 * 119.99644 * 0.02562 * 15 14 13 18 18 H 1.48507 * 109.47087 * 90.00364 * 17 15 14 19 19 H 1.48497 * 109.46828 * 209.99954 * 17 15 14 20 20 H 1.48500 * 109.47588 * 330.00367 * 17 15 14 21 21 C 1.51266 * 118.30068 * 51.34359 * 14 13 12 22 22 C 1.52965 * 109.41421 * 205.00541 * 10 9 8 23 23 C 1.38221 * 119.79580 * 359.97438 * 8 7 6 24 24 C 1.50922 * 133.21387 * 180.02562 * 23 8 7 25 25 H 1.09001 * 109.46896 * 359.97264 * 1 2 3 26 26 H 1.08997 * 109.47026 * 119.97157 * 1 2 3 27 27 H 1.09001 * 109.47000 * 239.97566 * 1 2 3 28 28 H 1.07997 * 124.46878 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.97058 * 359.90251 * 5 4 3 30 30 H 1.08002 * 119.77277 * 179.72991 * 6 5 4 31 31 H 1.07999 * 119.99496 * 180.30265 * 7 6 5 32 32 H 0.96997 * 120.00022 * 180.02562 * 9 8 7 33 33 H 1.09001 * 109.47988 * 303.68442 * 12 10 9 34 34 H 1.09006 * 109.48455 * 63.71977 * 12 10 9 35 35 H 1.09009 * 109.62909 * 185.65425 * 13 12 10 36 36 H 1.09000 * 109.78183 * 65.18130 * 13 12 10 37 37 H 0.97002 * 119.99297 * 179.97438 * 16 15 14 38 38 H 1.08997 * 109.63180 * 188.93619 * 21 14 13 39 39 H 1.09005 * 109.78064 * 68.46351 * 21 14 13 40 40 H 1.09005 * 109.47825 * 296.27550 * 22 10 9 41 41 H 1.08997 * 109.48346 * 56.30154 * 22 10 9 42 42 H 1.09002 * 110.25155 * 298.97987 * 24 23 8 43 43 H 1.08999 * 110.24461 * 60.98587 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2815 1.0709 0.0000 4 6 3.7073 0.6939 0.0006 5 6 4.8755 1.4615 0.0070 6 6 6.1086 0.8431 0.0022 7 6 6.2009 -0.5362 0.0025 8 6 5.0453 -1.3111 0.0019 9 7 5.1366 -2.7051 0.0028 10 6 6.4505 -3.3531 0.0038 11 1 7.1476 -2.7598 -0.5879 12 6 6.9652 -3.4566 1.4404 13 6 8.3780 -4.0497 1.4336 14 6 8.3437 -5.3651 0.6876 15 6 8.8703 -6.5097 1.2478 16 7 8.8320 -7.6443 0.5840 17 14 9.6382 -6.4484 2.9496 18 1 8.5975 -6.7248 3.9724 19 1 10.7106 -7.4710 3.0458 20 1 10.2166 -5.1009 3.1836 21 6 7.7173 -5.3928 -0.6890 22 6 6.3284 -4.7510 -0.6052 23 6 3.8068 -0.6975 0.0014 24 6 2.3925 -1.2242 0.0012 25 1 -0.3633 1.0277 0.0005 26 1 -0.3633 -0.5134 -0.8902 27 1 -0.3633 -0.5142 0.8898 28 1 1.9182 2.0879 0.0004 29 1 4.8126 2.5397 0.0112 30 1 7.0082 1.4407 0.0027 31 1 7.1702 -1.0125 0.0036 32 1 4.3301 -3.2439 0.0019 33 1 6.9898 -2.4639 1.8901 34 1 6.3030 -4.1013 2.0183 35 1 8.7093 -4.2184 2.4583 36 1 9.0635 -3.3641 0.9355 37 1 9.2029 -8.4494 0.9781 38 1 7.6240 -6.4245 -1.0282 39 1 8.3380 -4.8324 -1.3881 40 1 5.6813 -5.3651 0.0211 41 1 5.9015 -4.6758 -1.6053 42 1 2.2121 -1.8204 -0.8933 43 1 2.2119 -1.8205 0.8956 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167844366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:55 Heat of formation + Delta-G solvation = 25.851420 kcal Electronic energy + Delta-G solvation = -21789.883852 eV Core-core repulsion = 18798.760997 eV Total energy + Delta-G solvation = -2991.122856 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.25466 -37.82982 -36.05892 -34.13477 -31.93173 -30.86266 -29.88642 -29.20246 -27.21496 -26.84277 -25.98834 -22.34192 -21.74522 -20.94919 -20.57431 -19.28596 -18.60443 -16.98345 -15.98846 -15.44385 -15.28751 -14.78836 -14.48686 -14.34718 -14.08638 -13.43281 -13.11377 -13.05278 -12.89235 -12.76617 -12.49383 -12.19816 -12.00886 -11.92027 -11.65219 -11.36151 -11.10338 -11.01321 -10.90703 -10.88489 -10.64019 -10.28392 -10.07681 -9.91733 -9.59326 -9.25388 -8.99156 -8.64411 -8.50382 -8.00430 -6.93528 -6.13929 -4.04838 1.11540 1.84781 2.63109 3.24659 3.33836 3.35539 3.88305 4.20536 4.35572 4.43981 4.61273 4.95727 5.13747 5.24367 5.27765 5.37666 5.45822 5.51181 5.63839 5.64788 5.67359 5.71954 5.83028 5.86406 5.96063 6.12856 6.24350 6.36127 6.44877 6.50710 6.63032 6.68895 6.71777 6.74430 6.84627 6.87979 6.96370 7.01579 7.07970 7.20779 7.37963 7.59632 7.67016 7.75122 7.84844 8.17329 8.34327 8.92817 9.51049 10.95639 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.026560 B = 0.003813 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.970469 B = 7341.748949 C = 7750.798272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.129 4.129 3 C -0.126 4.126 4 C -0.031 4.031 5 C -0.172 4.172 6 C -0.072 4.072 7 C -0.198 4.198 8 C 0.252 3.748 9 N -0.740 5.740 10 C 0.160 3.840 11 H 0.069 0.931 12 C -0.119 4.119 13 C -0.014 4.014 14 C -0.489 4.489 15 C 0.076 3.924 16 N -0.890 5.890 17 Si 0.888 3.112 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.267 1.267 21 C 0.013 3.987 22 C -0.113 4.113 23 C -0.192 4.192 24 C -0.045 4.045 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.123 0.877 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.128 0.872 32 H 0.393 0.607 33 H 0.036 0.964 34 H 0.052 0.948 35 H 0.030 0.970 36 H 0.017 0.983 37 H 0.264 0.736 38 H 0.059 0.941 39 H 0.005 0.995 40 H 0.053 0.947 41 H 0.035 0.965 42 H 0.089 0.911 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.449 14.173 -1.123 18.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.129 4.129 3 C -0.144 4.144 4 C -0.032 4.032 5 C -0.192 4.192 6 C -0.091 4.091 7 C -0.220 4.220 8 C 0.146 3.854 9 N -0.365 5.365 10 C 0.056 3.944 11 H 0.087 0.913 12 C -0.158 4.158 13 C -0.052 4.052 14 C -0.508 4.508 15 C -0.127 4.127 16 N -0.527 5.527 17 Si 0.716 3.284 18 H -0.204 1.204 19 H -0.216 1.216 20 H -0.192 1.192 21 C -0.024 4.024 22 C -0.152 4.152 23 C -0.197 4.197 24 C -0.081 4.081 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.141 0.859 29 H 0.129 0.871 30 H 0.136 0.864 31 H 0.146 0.854 32 H 0.226 0.774 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.049 0.951 36 H 0.036 0.964 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.023 0.977 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.107 0.893 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.188 13.857 -1.125 18.488 hybrid contribution 0.175 -0.226 0.999 1.039 sum -12.012 13.631 -0.126 18.169 Atomic orbital electron populations 1.20413 0.90105 1.02542 1.02304 1.22335 0.95313 0.95287 0.99943 1.21662 0.91389 0.98197 1.03125 1.19406 0.92612 0.92991 0.98199 1.20465 0.91185 0.98700 1.08850 1.20691 0.96898 0.93974 0.97547 1.20784 0.97191 0.93583 1.10485 1.17125 0.91603 0.84187 0.92476 1.45242 1.08852 1.02127 1.80306 1.20990 0.82430 0.93955 0.97033 0.91334 1.22015 0.99826 0.98460 0.95472 1.19725 0.91961 0.96573 0.96939 1.20032 1.37584 0.91992 1.01242 1.24846 0.95348 0.94974 0.97495 1.69833 1.45317 0.99670 1.37918 0.86660 0.79343 0.77657 0.84710 1.20449 1.21628 1.19168 1.19330 0.89635 0.97813 0.95667 1.21900 1.01833 0.94048 0.97410 1.19732 0.92925 0.94785 1.12229 1.19626 0.89720 0.96586 1.02212 0.91644 0.91233 0.91229 0.85876 0.87093 0.86368 0.85427 0.77390 0.94572 0.92962 0.95130 0.96443 0.92567 0.92195 0.97657 0.92871 0.94676 0.89288 0.89255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.75 10.42 36.01 0.38 -0.38 16 2 C -0.13 -1.41 6.35 -101.08 -0.64 -2.05 16 3 C -0.13 -1.50 10.60 -37.74 -0.40 -1.90 16 4 C -0.03 -0.45 6.23 -105.09 -0.65 -1.10 16 5 C -0.17 -2.36 10.10 -39.11 -0.39 -2.75 16 6 C -0.07 -1.02 10.01 -39.69 -0.40 -1.41 16 7 C -0.20 -3.14 8.82 -39.25 -0.35 -3.49 16 8 C 0.25 4.06 6.62 -83.95 -0.56 3.50 16 9 N -0.74 -12.05 5.25 -52.32 -0.27 -12.32 16 10 C 0.16 2.98 2.05 -67.97 -0.14 2.84 16 11 H 0.07 1.32 6.49 -51.93 -0.34 0.98 16 12 C -0.12 -2.39 5.43 -26.64 -0.14 -2.54 16 13 C -0.01 -0.32 5.59 -27.49 -0.15 -0.47 16 14 C -0.49 -12.61 5.51 -98.92 -0.55 -13.15 16 15 C 0.08 2.05 5.46 -17.82 -0.10 1.95 16 16 N -0.89 -25.26 12.73 55.43 0.71 -24.55 16 17 Si 0.89 20.96 27.27 -169.99 -4.64 16.33 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.12 6.46 56.52 0.37 -5.76 16 21 C 0.01 0.33 5.97 -27.49 -0.16 0.16 16 22 C -0.11 -2.30 5.40 -26.63 -0.14 -2.45 16 23 C -0.19 -2.85 6.28 -104.05 -0.65 -3.50 16 24 C -0.05 -0.55 6.45 -28.74 -0.19 -0.73 16 25 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 31 H 0.13 2.08 6.16 -52.49 -0.32 1.75 16 32 H 0.39 5.85 8.35 -40.82 -0.34 5.51 16 33 H 0.04 0.69 7.72 -51.93 -0.40 0.29 16 34 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.03 0.70 4.78 -51.92 -0.25 0.45 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.06 1.59 7.07 -51.93 -0.37 1.23 16 39 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 337.64 15.07 5.09 5.09 Total: -1.00 -28.06 337.64 -11.04 -39.10 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -6.68 Total: 3.83 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: -5.24 Total: -27.47 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.43 Total: -36.88 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.64 Total: 16.33 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.06 -11.04 -39.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167844366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.952 kcal (2) G-P(sol) polarization free energy of solvation -28.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds