Wall clock time and date at job start Tue Mar 31 2020 06:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 C 1.53000 * 109.47134 * 119.99827 * 2 1 3 5 5 C 1.53001 * 109.46786 * 184.99812 * 4 2 1 6 6 C 1.50708 * 109.46907 * 180.02562 * 5 4 2 7 7 H 1.07998 * 119.99767 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99999 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00131 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99897 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47151 * 90.00382 * 10 8 6 12 12 H 1.48504 * 109.47117 * 210.00029 * 10 8 6 13 13 H 1.48503 * 109.47335 * 330.00074 * 10 8 6 14 14 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 15 15 C 1.46901 * 110.99793 * 85.00144 * 14 2 1 16 16 C 1.50701 * 109.46921 * 179.97438 * 15 14 2 17 17 C 1.39382 * 119.50387 * 89.99750 * 16 15 14 18 18 C 1.36091 * 120.98937 * 179.97438 * 17 16 15 19 19 C 1.40536 * 119.65330 * 0.02562 * 18 17 16 20 20 C 1.40540 * 121.29451 * 180.02562 * 19 18 17 21 21 C 1.36091 * 119.65761 * 179.97438 * 20 19 18 22 22 C 1.39373 * 120.99221 * 0.02562 * 21 20 19 23 23 C 1.36091 * 120.98599 * 0.02562 * 22 21 20 24 24 C 1.40537 * 119.65297 * 359.96707 * 23 22 21 25 25 C 1.36087 * 119.50553 * 269.72738 * 16 15 14 26 26 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 28 28 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 29 29 H 1.08996 * 109.47600 * 304.99945 * 4 2 1 30 30 H 1.09003 * 109.47172 * 65.00406 * 4 2 1 31 31 H 1.09001 * 109.47460 * 300.00033 * 5 4 2 32 32 H 1.08999 * 109.47250 * 60.00412 * 5 4 2 33 33 H 0.97000 * 119.99909 * 180.02562 * 9 8 6 34 34 H 1.00898 * 110.99995 * 208.95221 * 14 2 1 35 35 H 1.09002 * 109.47401 * 59.99808 * 15 14 2 36 36 H 1.09001 * 109.46874 * 299.99821 * 15 14 2 37 37 H 1.07994 * 119.50423 * 359.97438 * 17 16 15 38 38 H 1.07993 * 120.17793 * 180.02562 * 18 17 16 39 39 H 1.08003 * 120.16861 * 359.96173 * 20 19 18 40 40 H 1.08005 * 119.50296 * 180.02562 * 21 20 19 41 41 H 1.07998 * 119.50365 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.17218 * 179.97438 * 23 22 21 43 43 H 1.07997 * 120.17746 * 359.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3136 6 6 4.0672 -1.3242 2.5438 7 1 3.3688 -1.8052 3.2125 8 6 5.4185 -1.3613 2.8150 9 7 6.2690 -0.7760 2.0003 10 14 6.0412 -2.2419 4.3401 11 1 6.3206 -3.6630 4.0119 12 1 7.2880 -1.5891 4.8143 13 1 5.0102 -2.1737 5.4068 14 7 2.0196 -0.6925 -1.1995 15 6 2.0824 0.2226 -2.3469 16 6 2.5884 -0.5216 -3.5558 17 6 1.6797 -1.1539 -4.4026 18 6 2.1033 -1.8337 -5.5028 19 6 3.4770 -1.9017 -5.7920 20 6 3.9524 -2.5938 -6.9190 21 6 5.2896 -2.6379 -7.1676 22 6 6.1983 -2.0065 -6.3201 23 6 5.7747 -1.3279 -5.2191 24 6 4.4011 -1.2604 -4.9299 25 6 3.9252 -0.5614 -3.8072 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.6054 -0.2617 2.1370 30 1 1.7517 -1.7715 1.2056 31 1 3.9994 -1.0728 0.4259 32 1 3.8532 0.4370 1.3573 33 1 7.2198 -0.8024 2.1909 34 1 2.9172 -1.1205 -1.0288 35 1 2.7588 1.0462 -2.1183 36 1 1.0870 0.6163 -2.5525 37 1 0.6237 -1.1035 -4.1824 38 1 1.3878 -2.3185 -6.1503 39 1 3.2600 -3.0884 -7.5842 40 1 5.6522 -3.1701 -8.0346 41 1 7.2544 -2.0564 -6.5406 42 1 6.4903 -0.8438 -4.5712 43 1 4.6173 -0.0627 -3.1448 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172480966.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:04 Heat of formation + Delta-G solvation = 19.251645 kcal Electronic energy + Delta-G solvation = -21092.738246 eV Core-core repulsion = 18101.329202 eV Total energy + Delta-G solvation = -2991.409043 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.33692 -37.65127 -36.24778 -33.41202 -32.74385 -31.80173 -29.91635 -29.37088 -28.63001 -25.53241 -24.57500 -23.21795 -21.91661 -21.67430 -21.22847 -19.53431 -17.31937 -16.97216 -16.36235 -15.96463 -15.26517 -14.91754 -14.70275 -14.51011 -14.00770 -13.70549 -13.53693 -13.29846 -13.12156 -12.57538 -12.54108 -12.35827 -12.08659 -11.87741 -11.50779 -11.49304 -11.16999 -11.10093 -10.92489 -10.79154 -10.75404 -10.47662 -10.22728 -9.92010 -9.75928 -9.27951 -9.03745 -8.49291 -8.36105 -8.02102 -7.79998 -6.01200 -4.03033 0.58136 1.04638 2.10743 3.01114 3.31920 3.38099 3.41531 4.13491 4.45735 4.59163 4.71172 4.84023 4.90557 4.97621 5.07763 5.27590 5.30192 5.35012 5.42101 5.47427 5.50601 5.68852 5.71424 5.83178 5.86168 5.92631 6.01142 6.10180 6.18206 6.27612 6.28956 6.36017 6.47283 6.51390 6.53572 6.60928 6.73866 6.87747 6.91089 7.05431 7.08255 7.49016 7.61445 7.79233 7.89656 7.98868 8.42032 9.03500 9.61237 11.10076 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014004 B = 0.003983 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.955089 B = 7029.040573 C = 8647.981111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.081 3.919 3 H 0.038 0.962 4 C -0.114 4.114 5 C 0.020 3.980 6 C -0.519 4.519 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.274 1.274 14 N -0.681 5.681 15 C 0.095 3.905 16 C -0.071 4.071 17 C -0.089 4.089 18 C -0.116 4.116 19 C -0.053 4.053 20 C -0.110 4.110 21 C -0.121 4.121 22 C -0.124 4.124 23 C -0.100 4.100 24 C -0.049 4.049 25 C -0.098 4.098 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.015 0.985 32 H 0.012 0.988 33 H 0.260 0.740 34 H 0.354 0.646 35 H 0.038 0.962 36 H 0.075 0.925 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.128 0.872 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.316 0.166 -17.841 18.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.028 4.028 3 H 0.056 0.944 4 C -0.152 4.152 5 C -0.017 4.017 6 C -0.557 4.557 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.719 3.281 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.199 1.199 14 N -0.316 5.316 15 C -0.034 4.034 16 C -0.071 4.071 17 C -0.107 4.107 18 C -0.134 4.134 19 C -0.053 4.053 20 C -0.128 4.128 21 C -0.139 4.139 22 C -0.142 4.142 23 C -0.118 4.118 24 C -0.049 4.049 25 C -0.116 4.116 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.033 0.967 32 H 0.030 0.970 33 H 0.069 0.931 34 H 0.176 0.824 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.146 0.854 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.751 -0.037 -18.005 19.229 hybrid contribution 1.320 0.007 1.068 1.698 sum -5.431 -0.030 -16.938 17.787 Atomic orbital electron populations 1.21789 0.95738 1.01711 1.00149 1.21627 0.94535 0.96118 0.90505 0.94397 1.21829 0.99664 0.99474 0.94268 1.19129 0.88801 0.96818 0.96928 1.21238 0.91958 1.34171 1.08349 0.92679 1.25013 0.97076 0.95587 0.96706 1.69956 1.02333 1.44112 1.37133 0.86608 0.78298 0.79800 0.83393 1.20642 1.21263 1.19879 1.60662 1.34952 1.32076 1.03939 1.20954 1.00260 0.93307 0.88900 1.19581 0.93184 0.98223 0.96126 1.20738 0.99731 0.96439 0.93829 1.20953 0.94146 1.00203 0.98125 1.18095 0.93477 0.98364 0.95357 1.20987 0.95885 0.99215 0.96683 1.20807 0.93419 0.99957 0.99683 1.20817 0.99682 0.98416 0.95326 1.21116 0.94499 0.98863 0.97302 1.18083 0.93346 0.98182 0.95324 1.21043 0.95519 0.98796 0.96283 0.92371 0.93021 0.93813 0.92695 0.92458 0.96682 0.96974 0.93058 0.82447 0.94421 0.90656 0.85908 0.85812 0.85889 0.86306 0.86166 0.85432 0.85364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.41 37.16 0.35 -1.62 16 2 C 0.08 1.40 2.65 -67.71 -0.18 1.23 16 3 H 0.04 0.67 7.80 -51.93 -0.40 0.27 16 4 C -0.11 -2.36 4.74 -26.73 -0.13 -2.48 16 5 C 0.02 0.52 4.80 -27.88 -0.13 0.38 16 6 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 7 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 10 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 13 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 14 N -0.68 -11.49 6.30 -107.99 -0.68 -12.17 16 15 C 0.09 1.37 5.58 -4.97 -0.03 1.34 16 16 C -0.07 -1.00 5.36 -104.97 -0.56 -1.56 16 17 C -0.09 -1.13 9.59 -39.93 -0.38 -1.52 16 18 C -0.12 -1.39 9.77 -39.49 -0.39 -1.78 16 19 C -0.05 -0.69 5.74 -106.83 -0.61 -1.30 16 20 C -0.11 -1.21 9.77 -39.49 -0.39 -1.60 16 21 C -0.12 -1.25 9.95 -39.93 -0.40 -1.65 16 22 C -0.12 -1.38 9.95 -39.93 -0.40 -1.77 16 23 C -0.10 -1.27 9.77 -39.49 -0.39 -1.65 16 24 C -0.05 -0.70 5.74 -106.83 -0.61 -1.31 16 25 C -0.10 -1.42 9.37 -39.48 -0.37 -1.79 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.04 0.57 7.45 -51.93 -0.39 0.18 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.02 0.40 6.43 -51.93 -0.33 0.06 16 32 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.35 6.77 6.46 -39.29 -0.25 6.51 16 35 H 0.04 0.56 7.98 -51.93 -0.41 0.14 16 36 H 0.08 0.98 7.37 -51.93 -0.38 0.60 16 37 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 40 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 43 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 353.86 15.07 5.33 5.33 Total: -1.00 -30.40 353.86 -11.45 -41.85 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -6.79 Total: 4.83 kcal Atomic # 6 Polarization: -25.53 SS G_CDS: -5.02 Total: -30.55 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.06 Total: -38.19 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.40 -11.45 -41.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480966.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.102 kcal (2) G-P(sol) polarization free energy of solvation -30.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds