Wall clock time and date at job start Tue Mar 31 2020 06:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47150 * 2 1 4 4 C 1.52999 * 109.47215 * 239.99878 * 2 1 3 5 5 C 1.53004 * 109.47192 * 175.00209 * 4 2 1 6 6 C 1.50696 * 109.47256 * 179.97438 * 5 4 2 7 7 H 1.08003 * 120.00083 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00193 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99658 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00216 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47041 * 59.99862 * 10 8 6 12 12 H 1.48502 * 109.47284 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.46989 * 300.00230 * 10 8 6 14 14 N 1.46899 * 109.47089 * 119.99747 * 2 1 3 15 15 C 1.46905 * 111.00050 * 275.00165 * 14 2 1 16 16 C 1.50701 * 109.46907 * 179.97438 * 15 14 2 17 17 C 1.39374 * 119.50485 * 269.72312 * 16 15 14 18 18 C 1.36091 * 120.99067 * 180.25543 * 17 16 15 19 19 C 1.40537 * 119.65305 * 0.04434 * 18 17 16 20 20 C 1.40539 * 121.28595 * 179.97438 * 19 18 17 21 21 C 1.36085 * 119.65905 * 180.02562 * 20 19 18 22 22 C 1.39379 * 120.98673 * 359.95877 * 21 20 19 23 23 C 1.36092 * 120.98708 * 0.02562 * 22 21 20 24 24 C 1.40537 * 119.65719 * 0.02562 * 23 22 21 25 25 C 1.36095 * 119.50677 * 90.00086 * 16 15 14 26 26 H 1.08999 * 109.47490 * 300.00403 * 1 2 3 27 27 H 1.09008 * 109.47122 * 60.00059 * 1 2 3 28 28 H 1.08996 * 109.47823 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46728 * 295.00046 * 4 2 1 30 30 H 1.08992 * 109.47188 * 55.00153 * 4 2 1 31 31 H 1.09001 * 109.46975 * 300.00339 * 5 4 2 32 32 H 1.09000 * 109.46816 * 59.99941 * 5 4 2 33 33 H 0.97005 * 119.99707 * 180.02562 * 9 8 6 34 34 H 1.00903 * 111.00398 * 151.04488 * 14 2 1 35 35 H 1.08994 * 109.47259 * 60.00144 * 15 14 2 36 36 H 1.09000 * 109.47016 * 299.99870 * 15 14 2 37 37 H 1.08006 * 119.50633 * 0.25663 * 17 16 15 38 38 H 1.07999 * 120.17639 * 180.02562 * 18 17 16 39 39 H 1.08007 * 120.16869 * 0.02933 * 20 19 18 40 40 H 1.07996 * 119.50984 * 179.97438 * 21 20 19 41 41 H 1.07996 * 119.50415 * 180.02562 * 22 21 20 42 42 H 1.08005 * 120.17198 * 179.97438 * 23 22 21 43 43 H 1.07997 * 120.16752 * 359.74149 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 6 4.0672 -1.3243 -2.5437 7 1 3.3688 -1.8054 -3.2124 8 6 5.4185 -1.3615 -2.8149 9 7 6.2690 -0.7761 -2.0003 10 14 6.0414 -2.2434 -4.3392 11 1 5.4497 -1.6181 -5.5493 12 1 7.5214 -2.1385 -4.4018 13 1 5.6481 -3.6740 -4.2788 14 7 2.0196 -0.6924 1.1995 15 6 2.0823 0.2227 2.3469 16 6 2.5872 -0.5217 3.5561 17 6 1.6773 -1.1484 4.4056 18 6 2.0995 -1.8245 5.5087 19 6 3.4729 -1.8928 5.7989 20 6 3.9467 -2.5812 6.9289 21 6 5.2837 -2.6259 7.1786 22 6 6.1937 -1.9991 6.3291 23 6 5.7715 -1.3238 5.2256 24 6 4.3981 -1.2549 4.9355 25 6 3.9244 -0.5671 3.8052 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 1.7516 -1.7715 -1.2055 30 1 1.6054 -0.2618 -2.1369 31 1 3.8532 0.4369 -1.3572 32 1 3.9993 -1.0729 -0.4259 33 1 7.2197 -0.8019 -2.1912 34 1 2.9172 -1.1205 1.0288 35 1 1.0870 0.6164 2.5526 36 1 2.7587 1.0463 2.1182 37 1 0.6212 -1.0968 4.1853 38 1 1.3830 -2.3057 6.1579 39 1 3.2532 -3.0722 7.5957 40 1 5.6451 -3.1551 8.0479 41 1 7.2496 -2.0501 6.5499 42 1 6.4882 -0.8425 4.5765 43 1 4.6177 -0.0764 3.1382 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172480967.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:08 Heat of formation + Delta-G solvation = 19.292111 kcal Electronic energy + Delta-G solvation = -21091.106333 eV Core-core repulsion = 18099.699045 eV Total energy + Delta-G solvation = -2991.407289 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.33753 -37.65140 -36.24815 -33.41158 -32.74366 -31.80204 -29.91680 -29.37077 -28.62894 -25.53250 -24.57482 -23.21746 -21.91687 -21.67390 -21.22777 -19.53366 -17.31944 -16.97223 -16.36000 -15.96487 -15.26345 -14.91760 -14.70234 -14.51351 -14.00932 -13.70662 -13.53653 -13.29873 -13.12277 -12.57552 -12.53806 -12.35374 -12.08440 -11.87661 -11.50657 -11.49515 -11.17582 -11.09957 -10.91213 -10.79150 -10.74808 -10.49247 -10.23328 -9.92019 -9.75514 -9.27845 -9.04569 -8.49357 -8.35741 -8.02075 -7.79959 -6.00977 -4.02887 0.58122 1.04589 2.10738 3.01105 3.33425 3.37596 3.40412 4.13494 4.45807 4.59094 4.71086 4.84018 4.90522 4.97649 5.07729 5.27582 5.30153 5.35115 5.42096 5.47378 5.50586 5.68865 5.71465 5.83173 5.86198 5.92710 6.01152 6.10155 6.18234 6.27572 6.28917 6.36025 6.47237 6.51435 6.53614 6.60911 6.73890 6.87722 6.91136 7.05398 7.08312 7.49086 7.61334 7.79304 7.89693 7.98971 8.42161 9.03407 9.61284 11.10255 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014024 B = 0.003977 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.088800 B = 7038.014312 C = 8656.382809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.081 3.919 3 H 0.038 0.962 4 C -0.114 4.114 5 C 0.021 3.979 6 C -0.520 4.520 7 H 0.054 0.946 8 C 0.058 3.942 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.276 1.276 14 N -0.682 5.682 15 C 0.095 3.905 16 C -0.071 4.071 17 C -0.089 4.089 18 C -0.116 4.116 19 C -0.053 4.053 20 C -0.110 4.110 21 C -0.121 4.121 22 C -0.124 4.124 23 C -0.100 4.100 24 C -0.049 4.049 25 C -0.098 4.098 26 H 0.043 0.957 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.012 0.988 32 H 0.015 0.985 33 H 0.260 0.740 34 H 0.354 0.646 35 H 0.075 0.925 36 H 0.038 0.962 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.128 0.872 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.302 0.178 17.853 18.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.028 4.028 3 H 0.056 0.944 4 C -0.152 4.152 5 C -0.016 4.016 6 C -0.558 4.558 7 H 0.073 0.927 8 C -0.143 4.143 9 N -0.535 5.535 10 Si 0.719 3.281 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.202 1.202 14 N -0.316 5.316 15 C -0.034 4.034 16 C -0.071 4.071 17 C -0.107 4.107 18 C -0.134 4.134 19 C -0.053 4.053 20 C -0.128 4.128 21 C -0.139 4.139 22 C -0.142 4.142 23 C -0.118 4.118 24 C -0.049 4.049 25 C -0.116 4.116 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.030 0.970 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.176 0.824 35 H 0.093 0.907 36 H 0.056 0.944 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.146 0.854 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.731 -0.030 18.023 19.239 hybrid contribution 1.306 0.013 -1.079 1.694 sum -5.425 -0.017 16.944 17.792 Atomic orbital electron populations 1.21789 0.95739 1.01711 1.00148 1.21625 0.94534 0.96119 0.90508 0.94399 1.21828 0.99669 0.99473 0.94268 1.19120 0.88793 0.96803 0.96911 1.21201 0.91952 1.34289 1.08374 0.92732 1.25011 0.97061 0.95587 0.96690 1.69946 1.02392 1.44112 1.37080 0.86666 0.77579 0.80305 0.83514 1.20272 1.21308 1.20207 1.60661 1.34955 1.32079 1.03943 1.20956 1.00264 0.93304 0.88898 1.19581 0.93170 0.98213 0.96145 1.20738 0.99725 0.96472 0.93808 1.20955 0.94153 1.00220 0.98104 1.18095 0.93479 0.98352 0.95366 1.20986 0.95896 0.99230 0.96659 1.20806 0.93414 0.99969 0.99676 1.20819 0.99678 0.98450 0.95297 1.21117 0.94502 0.98848 0.97311 1.18080 0.93348 0.98250 0.95266 1.21041 0.95534 0.98846 0.96208 0.93820 0.93017 0.92372 0.92458 0.92700 0.96987 0.96686 0.92998 0.82443 0.90660 0.94409 0.85908 0.85811 0.85889 0.86306 0.86166 0.85432 0.85359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.41 37.15 0.35 -1.62 16 2 C 0.08 1.41 2.65 -67.72 -0.18 1.23 16 3 H 0.04 0.67 7.80 -51.93 -0.40 0.27 16 4 C -0.11 -2.36 4.74 -26.73 -0.13 -2.49 16 5 C 0.02 0.53 4.80 -27.88 -0.13 0.40 16 6 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 7 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 10 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 N -0.68 -11.50 6.30 -107.99 -0.68 -12.18 16 15 C 0.09 1.37 5.58 -4.97 -0.03 1.34 16 16 C -0.07 -1.00 5.36 -104.97 -0.56 -1.56 16 17 C -0.09 -1.13 9.58 -39.93 -0.38 -1.52 16 18 C -0.12 -1.39 9.77 -39.49 -0.39 -1.78 16 19 C -0.05 -0.69 5.74 -106.83 -0.61 -1.30 16 20 C -0.11 -1.21 9.77 -39.49 -0.39 -1.60 16 21 C -0.12 -1.25 9.95 -39.93 -0.40 -1.65 16 22 C -0.12 -1.38 9.95 -39.93 -0.40 -1.77 16 23 C -0.10 -1.27 9.77 -39.49 -0.39 -1.65 16 24 C -0.05 -0.70 5.74 -106.83 -0.61 -1.31 16 25 C -0.10 -1.42 9.37 -39.48 -0.37 -1.79 16 26 H 0.04 0.57 7.45 -51.93 -0.39 0.18 16 27 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.01 0.40 6.43 -51.93 -0.33 0.06 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.35 6.77 6.46 -39.29 -0.25 6.51 16 35 H 0.08 0.98 7.37 -51.93 -0.38 0.60 16 36 H 0.04 0.56 7.98 -51.93 -0.41 0.15 16 37 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 38 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 40 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 43 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 353.86 15.07 5.33 5.33 Total: -1.00 -30.38 353.86 -11.45 -41.83 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.79 Total: 4.86 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: -5.02 Total: -30.56 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.06 Total: -38.19 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.38 -11.45 -41.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480967.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.118 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds