Wall clock time and date at job start Tue Mar 31 2020 05:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45203 * 109.46937 * 2 1 4 4 C 1.34230 * 116.99435 * 180.02562 * 3 2 1 5 5 O 1.20818 * 120.00619 * 359.97438 * 4 3 2 6 6 C 1.50708 * 119.99715 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.46499 * 299.99449 * 6 4 3 8 8 C 1.52999 * 109.47153 * 59.99505 * 6 4 3 9 9 C 1.50697 * 109.47244 * 179.97438 * 6 4 3 10 10 O 1.21277 * 119.99787 * 359.97438 * 9 6 4 11 11 N 1.34775 * 120.00023 * 179.97438 * 9 6 4 12 12 C 1.46499 * 120.00009 * 179.97438 * 11 9 6 13 13 H 1.08996 * 109.41225 * 324.58458 * 12 11 9 14 14 C 1.52961 * 109.41381 * 84.37328 * 12 11 9 15 15 C 1.53223 * 109.40767 * 183.70087 * 14 12 11 16 16 C 1.51271 * 108.53742 * 305.37924 * 15 14 12 17 17 C 1.37882 * 120.84482 * 231.32095 * 16 15 14 18 18 N 1.31508 * 120.00086 * 348.87845 * 17 16 15 19 19 Si 1.86801 * 119.99579 * 168.87955 * 17 16 15 20 20 H 1.48495 * 109.47360 * 354.66101 * 19 17 16 21 21 H 1.48502 * 109.46959 * 114.66135 * 19 17 16 22 22 H 1.48500 * 109.46847 * 234.65870 * 19 17 16 23 23 C 1.51264 * 118.30202 * 51.34544 * 16 15 14 24 24 C 1.52956 * 109.41546 * 204.72602 * 12 11 9 25 25 H 1.08994 * 109.47476 * 60.00003 * 1 2 3 26 26 H 1.08998 * 109.46972 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47361 * 299.99690 * 1 2 3 28 28 H 1.09009 * 109.47180 * 240.00007 * 2 1 3 29 29 H 1.09000 * 109.47316 * 120.00443 * 2 1 3 30 30 H 1.09004 * 109.46977 * 300.00018 * 8 6 4 31 31 H 1.08995 * 109.47073 * 60.00593 * 8 6 4 32 32 H 1.08998 * 109.46874 * 180.02562 * 8 6 4 33 33 H 0.97001 * 119.99785 * 359.72942 * 11 9 6 34 34 H 1.08995 * 109.48281 * 303.68794 * 14 12 11 35 35 H 1.09006 * 109.47687 * 63.72668 * 14 12 11 36 36 H 1.08998 * 109.63080 * 185.65811 * 15 14 12 37 37 H 1.09005 * 109.78069 * 65.18091 * 15 14 12 38 38 H 0.96998 * 119.99959 * 180.02562 * 18 17 16 39 39 H 1.09004 * 109.62546 * 188.94387 * 23 16 15 40 40 H 1.08991 * 109.78655 * 68.45944 * 23 16 15 41 41 H 1.09005 * 109.48451 * 296.27720 * 24 12 11 42 42 H 1.09006 * 109.48226 * 56.30041 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.5844 3.4700 -0.8896 8 6 3.4497 3.6837 1.2498 9 6 5.4256 2.8586 -0.0001 10 8 5.9762 1.7780 -0.0001 11 7 6.1597 3.9889 -0.0002 12 6 7.6226 3.9122 0.0002 13 1 7.9404 3.0568 0.5963 14 6 8.1234 3.7440 -1.4353 15 6 9.6458 3.5711 -1.4265 16 6 10.2581 4.7392 -0.6855 17 6 11.2774 5.4776 -1.2486 18 7 11.8777 5.0472 -2.3366 19 14 11.8055 7.0894 -0.4658 20 1 10.8964 7.4128 0.6629 21 1 13.1961 6.9620 0.0395 22 1 11.7439 8.1746 -1.4776 23 6 9.7241 5.0759 0.6891 24 6 8.1988 5.1943 0.6034 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 2.3611 3.7407 1.2503 31 1 3.7861 3.1511 2.1394 32 1 3.8660 4.6910 1.2500 33 1 5.7193 4.8531 -0.0042 34 1 7.6601 2.8638 -1.8811 35 1 7.8612 4.6274 -2.0176 36 1 10.0180 3.5516 -2.4508 37 1 9.9085 2.6404 -0.9237 38 1 12.5949 5.5665 -2.7325 39 1 10.1465 6.0234 1.0239 40 1 9.9912 4.2871 1.3921 41 1 7.9349 6.0434 -0.0271 42 1 7.7888 5.3422 1.6026 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184227513.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:38 Heat of formation + Delta-G solvation = -141.428563 kcal Electronic energy + Delta-G solvation = -22770.319739 eV Core-core repulsion = 19328.801064 eV Total energy + Delta-G solvation = -3441.518674 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.84287 -39.29797 -37.00034 -36.24838 -34.07429 -33.35283 -31.82015 -31.29279 -29.61719 -27.28557 -25.57515 -23.77040 -22.39116 -21.67989 -21.21637 -19.83923 -19.39325 -17.81295 -16.88353 -16.78772 -16.26693 -15.91741 -15.34628 -14.91163 -14.45576 -14.04809 -13.83627 -13.62921 -13.17054 -13.03824 -12.85503 -12.64391 -12.45562 -12.21879 -12.20098 -12.06093 -11.81437 -11.73082 -11.58418 -11.04523 -10.86039 -10.73656 -10.66934 -10.38866 -10.21194 -9.91142 -9.40657 -9.37188 -9.02222 -8.81147 -8.41088 -8.25167 -6.10281 -3.99476 2.20956 2.36028 2.90983 3.25269 3.33553 3.35526 3.53676 4.37226 4.37922 4.64833 4.67134 4.73682 4.77262 4.98977 5.02877 5.16496 5.32106 5.40122 5.49278 5.50763 5.66780 5.70546 5.80919 5.88558 6.17502 6.33790 6.47997 6.52394 6.71393 6.78484 6.82556 7.07166 7.11015 7.26285 7.42094 7.64939 7.76641 7.78617 7.85141 7.90854 8.40589 8.57486 8.97890 9.54867 10.99304 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.044142 B = 0.003311 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.160077 B = 8453.542277 C = 8827.474224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.363 6.363 4 C 0.461 3.539 5 O -0.457 6.457 6 C -0.106 4.106 7 H 0.130 0.870 8 C -0.139 4.139 9 C 0.509 3.491 10 O -0.500 6.500 11 N -0.722 5.722 12 C 0.156 3.844 13 H 0.078 0.922 14 C -0.115 4.115 15 C 0.013 3.987 16 C -0.489 4.489 17 C 0.076 3.924 18 N -0.885 5.885 19 Si 0.878 3.122 20 H -0.256 1.256 21 H -0.283 1.283 22 H -0.286 1.286 23 C -0.022 4.022 24 C -0.112 4.112 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.392 0.608 34 H 0.035 0.965 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.007 0.993 38 H 0.263 0.737 39 H 0.044 0.956 40 H 0.019 0.981 41 H 0.055 0.945 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.749 -1.389 5.469 22.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.281 6.281 4 C 0.300 3.700 5 O -0.339 6.339 6 C -0.129 4.129 7 H 0.148 0.852 8 C -0.197 4.197 9 C 0.291 3.709 10 O -0.373 6.373 11 N -0.373 5.373 12 C 0.053 3.947 13 H 0.096 0.904 14 C -0.154 4.154 15 C -0.025 4.025 16 C -0.508 4.508 17 C -0.127 4.127 18 N -0.522 5.522 19 Si 0.707 3.293 20 H -0.181 1.181 21 H -0.209 1.209 22 H -0.213 1.213 23 C -0.060 4.060 24 C -0.151 4.151 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.226 0.774 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.025 0.975 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.038 0.962 41 H 0.074 0.926 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -20.958 -2.506 5.335 21.771 hybrid contribution 0.073 1.204 0.154 1.216 sum -20.885 -1.301 5.489 21.633 Atomic orbital electron populations 1.21795 0.92670 1.02907 1.03427 1.22997 0.95159 0.80332 1.02735 1.86456 1.24545 1.32310 1.84792 1.22949 0.80680 0.91985 0.74394 1.90833 1.59554 1.42043 1.41519 1.21032 0.95071 0.92646 1.04105 0.85221 1.21713 1.02723 1.00372 0.94841 1.19737 0.87602 0.85275 0.78253 1.90862 1.72233 1.27317 1.46919 1.46319 1.08476 1.07528 1.74990 1.21067 0.75585 0.99445 0.98580 0.90366 1.21978 1.00264 0.99092 0.94060 1.19320 0.88889 0.95162 0.99098 1.20041 1.17159 1.13581 1.00034 1.24862 0.95284 0.97627 0.94901 1.69909 1.23141 1.37912 1.21281 0.86754 0.78619 0.84363 0.79594 1.18107 1.20945 1.21272 1.19910 0.90656 0.97971 0.97432 1.21866 0.99861 0.95750 0.97600 0.91503 0.90307 0.91524 0.91225 0.91262 0.90268 0.91512 0.90353 0.77432 0.94640 0.93300 0.92741 0.97505 0.92670 0.93802 0.96238 0.92618 0.94444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.29 37.16 0.38 -0.55 16 2 C 0.06 0.58 6.19 37.16 0.23 0.81 16 3 O -0.36 -4.12 10.12 -39.26 -0.40 -4.52 16 4 C 0.46 6.47 7.25 36.01 0.26 6.73 16 5 O -0.46 -8.47 13.93 -26.85 -0.37 -8.85 16 6 C -0.11 -1.24 3.17 -92.92 -0.29 -1.53 16 7 H 0.13 1.14 8.14 -51.93 -0.42 0.71 16 8 C -0.14 -1.17 9.02 37.16 0.34 -0.83 16 9 C 0.51 8.34 7.10 -10.99 -0.08 8.26 16 10 O -0.50 -10.88 13.85 -18.95 -0.26 -11.14 16 11 N -0.72 -11.05 4.97 -53.85 -0.27 -11.32 16 12 C 0.16 3.04 2.34 -67.97 -0.16 2.88 16 13 H 0.08 1.73 7.59 -51.93 -0.39 1.33 16 14 C -0.11 -2.54 5.50 -26.64 -0.15 -2.69 16 15 C 0.01 0.34 5.93 -27.49 -0.16 0.18 16 16 C -0.49 -12.84 5.48 -98.92 -0.54 -13.38 16 17 C 0.08 2.07 5.44 -17.82 -0.10 1.97 16 18 N -0.89 -25.61 12.82 55.43 0.71 -24.90 16 19 Si 0.88 20.40 27.95 -169.99 -4.75 15.65 16 20 H -0.26 -5.58 5.58 56.52 0.32 -5.27 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 C -0.02 -0.49 5.65 -27.49 -0.16 -0.65 16 24 C -0.11 -2.14 5.40 -26.64 -0.14 -2.28 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.68 8.13 -51.92 -0.42 0.26 16 29 H 0.07 0.67 8.13 -51.93 -0.42 0.24 16 30 H 0.08 0.53 8.11 -51.93 -0.42 0.11 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.52 7.57 -51.93 -0.39 0.13 16 33 H 0.39 4.56 8.03 -40.82 -0.33 4.23 16 34 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.05 1.53 7.19 -51.93 -0.37 1.16 16 37 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.04 0.98 4.36 -51.93 -0.23 0.75 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 339.20 15.07 5.11 5.11 Total: -1.00 -33.73 339.20 -7.65 -41.38 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.85 Total: -0.33 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -0.57 Total: -1.08 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.44 Total: -36.22 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -1.03 Total: -24.51 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.75 Total: 15.65 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.73 -7.65 -41.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184227513.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.044 kcal (2) G-P(sol) polarization free energy of solvation -33.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds