Wall clock time and date at job start Tue Mar 31 2020 05:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00288 * 2 1 4 4 H 1.48501 * 109.46985 * 273.76028 * 3 2 1 5 5 H 1.48507 * 109.46953 * 33.75721 * 3 2 1 6 6 H 1.48499 * 109.47269 * 153.75246 * 3 2 1 7 7 C 1.38816 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99689 * 341.99508 * 7 2 1 9 9 N 1.36931 * 120.00290 * 161.98820 * 7 2 1 10 10 C 1.46497 * 120.00287 * 142.56991 * 9 7 2 11 11 C 1.50696 * 109.47613 * 270.00681 * 10 9 7 12 12 C 1.38237 * 119.99679 * 269.72647 * 11 10 9 13 13 C 1.38236 * 119.99547 * 179.76732 * 12 11 10 14 14 C 1.38234 * 120.00248 * 0.47916 * 13 12 11 15 15 C 1.38231 * 119.99913 * 359.79398 * 14 13 12 16 16 C 1.38236 * 120.00171 * 89.99685 * 11 10 9 17 17 C 1.46505 * 119.99993 * 322.57788 * 9 7 2 18 18 C 1.52998 * 109.47005 * 263.80541 * 17 9 7 19 19 H 1.08998 * 110.51736 * 301.20651 * 18 17 9 20 20 C 1.54837 * 110.58311 * 63.99472 * 18 17 9 21 21 C 1.56193 * 103.68054 * 118.70037 * 20 18 17 22 22 H 1.09004 * 116.28582 * 164.01399 * 21 20 18 23 23 C 1.53356 * 104.07926 * 293.35338 * 21 20 18 24 24 C 1.31796 * 108.42319 * 70.08892 * 23 21 20 25 25 C 1.53322 * 108.56825 * 359.94173 * 24 23 21 26 26 H 1.09003 * 116.42367 * 160.72966 * 25 24 23 27 27 C 1.57258 * 100.40166 * 36.32681 * 21 20 18 28 28 H 0.97003 * 119.99888 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46748 * 30.00896 * 10 9 7 30 30 H 1.09000 * 109.47005 * 149.99965 * 10 9 7 31 31 H 1.07997 * 120.00349 * 359.97438 * 12 11 10 32 32 H 1.08007 * 119.99530 * 180.25188 * 13 12 11 33 33 H 1.08000 * 120.00074 * 179.77548 * 14 13 12 34 34 H 1.07995 * 120.00197 * 179.97438 * 15 14 13 35 35 H 1.08000 * 119.99643 * 0.02562 * 16 11 10 36 36 H 1.09005 * 109.47168 * 143.80332 * 17 9 7 37 37 H 1.09003 * 109.47004 * 23.80604 * 17 9 7 38 38 H 1.09001 * 110.57838 * 237.25163 * 20 18 17 39 39 H 1.08998 * 110.58222 * 359.97438 * 20 18 17 40 40 H 1.07996 * 125.79028 * 250.08904 * 23 21 20 41 41 H 1.07998 * 125.78551 * 180.02562 * 24 23 21 42 42 H 1.09002 * 112.52492 * 59.07652 * 27 21 20 43 43 H 1.09002 * 112.52277 * 186.94882 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4182 2.0922 -1.3971 5 1 1.4897 2.6284 0.7780 6 1 3.5852 1.4185 0.6192 7 6 2.0103 -1.2022 0.0005 8 1 1.5099 -2.1144 0.2900 9 7 3.3293 -1.2314 -0.3661 10 6 4.2627 -2.1226 0.3272 11 6 4.8666 -1.4005 1.5040 12 6 6.0377 -0.6829 1.3478 13 6 6.5890 -0.0166 2.4262 14 6 5.9746 -0.0759 3.6630 15 6 4.8065 -0.7981 3.8205 16 6 4.2524 -1.4603 2.7410 17 6 3.8070 -0.3714 -1.4517 18 6 3.8307 -1.1659 -2.7590 19 1 4.4774 -2.0382 -2.6643 20 6 2.3979 -1.5918 -3.1631 21 6 2.1800 -0.8924 -4.5426 22 1 1.3494 -1.2609 -5.1448 23 6 2.1637 0.6033 -4.2042 24 6 3.3833 0.9657 -3.8602 25 6 4.2990 -0.2613 -3.9430 26 1 5.3692 -0.0644 -4.0063 27 6 3.6240 -1.0131 -5.1534 28 1 -0.4850 0.8401 0.0004 29 1 3.7291 -3.0060 0.6778 30 1 5.0540 -2.4247 -0.3588 31 1 6.5202 -0.6401 0.3825 32 1 7.5019 0.5474 2.3032 33 1 6.4073 0.4417 4.5064 34 1 4.3266 -0.8449 4.7869 35 1 3.3399 -2.0248 2.8640 36 1 4.8131 -0.0207 -1.2214 37 1 3.1396 0.4838 -1.5582 38 1 2.3355 -2.6749 -3.2684 39 1 1.6720 -1.2369 -2.4316 40 1 1.2996 1.2499 -4.2414 41 1 3.6878 1.9597 -3.5673 42 1 3.9559 -2.0478 -5.2396 43 1 3.7271 -0.4688 -6.0922 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207630813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:17 Heat of formation + Delta-G solvation = 84.369791 kcal Electronic energy + Delta-G solvation = -23012.289586 eV Core-core repulsion = 20023.704277 eV Total energy + Delta-G solvation = -2988.585309 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.25272 -38.66342 -35.76930 -32.00429 -31.25527 -30.33869 -29.69391 -28.75996 -27.52958 -25.78572 -24.48773 -21.97920 -21.85598 -20.43791 -19.86855 -19.73314 -17.27377 -16.66074 -16.22897 -16.12754 -15.35572 -14.66387 -14.58131 -14.41227 -13.88477 -13.55426 -12.91518 -12.88454 -12.42989 -12.31196 -12.13130 -11.93915 -11.62358 -11.53405 -11.06684 -10.96147 -10.86173 -10.80442 -10.61171 -10.49846 -10.33213 -10.21225 -9.98073 -9.72447 -9.60063 -9.27886 -8.56395 -8.37037 -8.32217 -8.12602 -6.83817 -5.98661 -3.40236 1.93010 1.96332 2.77981 3.33086 3.49079 3.57508 4.31927 4.53945 4.88503 5.00356 5.10858 5.28833 5.36351 5.39383 5.42775 5.50060 5.54087 5.70232 5.73002 5.78077 5.92474 5.97160 6.01503 6.06222 6.09110 6.11449 6.22933 6.26177 6.38274 6.47131 6.51567 6.59891 6.61209 6.65024 6.70012 6.78811 6.85070 6.98515 7.04145 7.09507 7.32627 7.40651 7.47343 7.58919 8.05974 8.35818 8.97320 9.70515 10.10747 11.16010 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.018387 B = 0.006725 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.434362 B = 4162.626367 C = 4718.687852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.042 3.958 3 Si 0.870 3.130 4 H -0.279 1.279 5 H -0.308 1.308 6 H -0.266 1.266 7 C -0.257 4.257 8 H 0.080 0.920 9 N -0.594 5.594 10 C 0.180 3.820 11 C -0.080 4.080 12 C -0.120 4.120 13 C -0.129 4.129 14 C -0.141 4.141 15 C -0.126 4.126 16 C -0.099 4.099 17 C 0.141 3.859 18 C -0.098 4.098 19 H 0.062 0.938 20 C -0.108 4.108 21 C -0.081 4.081 22 H 0.090 0.910 23 C -0.157 4.157 24 C -0.172 4.172 25 C -0.077 4.077 26 H 0.090 0.910 27 C -0.117 4.117 28 H 0.262 0.738 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.121 0.879 36 H 0.030 0.970 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.104 0.896 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.068 0.932 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.127 -1.536 -3.599 10.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.159 4.159 3 Si 0.701 3.299 4 H -0.207 1.207 5 H -0.236 1.236 6 H -0.190 1.190 7 C -0.386 4.386 8 H 0.098 0.902 9 N -0.314 5.314 10 C 0.054 3.946 11 C -0.084 4.084 12 C -0.139 4.139 13 C -0.147 4.147 14 C -0.159 4.159 15 C -0.144 4.144 16 C -0.118 4.118 17 C 0.016 3.984 18 C -0.119 4.119 19 H 0.081 0.919 20 C -0.145 4.145 21 C -0.099 4.099 22 H 0.109 0.891 23 C -0.175 4.175 24 C -0.190 4.190 25 C -0.096 4.096 26 H 0.108 0.892 27 C -0.154 4.154 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.139 0.861 36 H 0.048 0.952 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.122 0.878 40 H 0.135 0.865 41 H 0.132 0.868 42 H 0.087 0.913 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.933 -1.472 -3.591 10.664 hybrid contribution 0.342 1.430 0.260 1.493 sum 10.275 -0.043 -3.330 10.801 Atomic orbital electron populations 1.69805 1.05832 1.26574 1.52055 1.25401 0.95006 0.97498 0.97987 0.87044 0.80855 0.84798 0.77169 1.20722 1.23638 1.19044 1.18738 0.83431 0.93812 1.42615 0.90216 1.44211 1.05658 1.47952 1.33585 1.20010 0.92203 0.92805 0.89604 1.21058 0.93185 0.97916 0.96196 1.20976 0.96484 0.98472 0.97993 1.20988 0.99977 1.00239 0.93505 1.20930 0.96928 1.00969 0.97116 1.21090 0.96223 0.98329 0.98738 1.21075 0.99029 0.99353 0.92300 1.21286 0.97100 0.93513 0.86481 1.22880 0.96742 0.97541 0.94725 0.91930 1.22751 0.97967 0.98370 0.95409 1.22946 0.96188 0.93462 0.97334 0.89128 1.23954 0.96938 0.96094 1.00469 1.23861 0.96115 0.97722 1.01273 1.23018 0.97224 0.93711 0.95642 0.89161 1.24053 0.95094 0.99527 0.96766 0.92804 0.92104 0.93376 0.87118 0.87201 0.87206 0.86930 0.86054 0.95160 0.91366 0.92888 0.87780 0.86456 0.86755 0.91295 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.71 13.97 55.49 0.78 -25.94 16 2 C 0.04 1.16 5.09 -17.43 -0.09 1.07 16 3 Si 0.87 22.46 24.78 -169.99 -4.21 18.24 16 4 H -0.28 -6.91 6.54 56.52 0.37 -6.54 16 5 H -0.31 -8.27 7.11 56.52 0.40 -7.87 16 6 H -0.27 -6.98 7.10 56.52 0.40 -6.57 16 7 C -0.26 -6.75 8.30 -15.06 -0.12 -6.87 16 8 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 9 N -0.59 -13.28 1.95 -174.61 -0.34 -13.62 16 10 C 0.18 3.47 5.81 -5.20 -0.03 3.44 16 11 C -0.08 -1.54 5.46 -104.63 -0.57 -2.11 16 12 C -0.12 -2.13 9.70 -39.58 -0.38 -2.51 16 13 C -0.13 -2.09 10.05 -39.58 -0.40 -2.49 16 14 C -0.14 -2.25 10.05 -39.59 -0.40 -2.65 16 15 C -0.13 -2.13 10.05 -39.58 -0.40 -2.53 16 16 C -0.10 -1.86 9.70 -39.58 -0.38 -2.25 16 17 C 0.14 2.97 3.31 -4.04 -0.01 2.96 16 18 C -0.10 -1.78 2.97 -87.94 -0.26 -2.04 16 19 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 20 C -0.11 -2.06 5.63 -24.05 -0.14 -2.20 16 21 C -0.08 -1.34 5.26 -86.41 -0.45 -1.80 16 22 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 23 C -0.16 -2.80 10.14 -34.86 -0.35 -3.15 16 24 C -0.17 -3.01 8.18 -34.88 -0.29 -3.29 16 25 C -0.08 -1.22 5.00 -86.19 -0.43 -1.65 16 26 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 27 C -0.12 -1.68 6.68 -21.87 -0.15 -1.82 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.06 1.16 7.98 -51.93 -0.41 0.75 16 30 H 0.05 0.83 8.01 -51.93 -0.42 0.41 16 31 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 33 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.12 2.29 8.06 -52.49 -0.42 1.86 16 36 H 0.03 0.61 8.12 -51.93 -0.42 0.19 16 37 H 0.07 1.59 1.82 -51.93 -0.09 1.49 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.10 2.47 5.81 -51.93 -0.30 2.17 16 40 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 41 H 0.11 1.96 8.06 -52.49 -0.42 1.54 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 336.20 15.07 5.07 5.07 Total: -1.00 -29.19 336.20 -10.30 -39.50 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -6.73 Total: 6.64 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: -4.86 Total: -29.89 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.43 Total: -39.56 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.21 Total: 18.24 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.19 -10.30 -39.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207630813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.867 kcal (2) G-P(sol) polarization free energy of solvation -29.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds