Wall clock time and date at job start Tue Mar 31 2020 05:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00090 * 2 1 4 4 H 1.48489 * 109.47482 * 240.00136 * 3 2 1 5 5 H 1.48501 * 109.46925 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46912 * 119.99975 * 3 2 1 7 7 C 1.37879 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00187 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99871 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47267 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47753 * 179.97438 * 10 9 7 12 12 N 1.46493 * 109.47487 * 180.02562 * 11 10 9 13 13 C 1.34783 * 119.99760 * 180.02562 * 12 11 10 14 14 O 1.21582 * 120.00193 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99497 * 179.97438 * 13 12 11 16 16 C 1.46505 * 119.99546 * 179.97438 * 15 13 12 17 17 C 1.52996 * 109.46934 * 175.27469 * 16 15 13 18 18 C 1.53006 * 115.55251 * 294.35696 * 17 16 15 19 19 C 1.50702 * 109.46681 * 294.18738 * 18 17 16 20 20 N 1.34778 * 119.99678 * 173.88216 * 19 18 17 21 21 O 1.21280 * 120.00382 * 353.60369 * 19 18 17 22 22 C 1.53000 * 117.49949 * 80.02308 * 17 16 15 23 23 C 1.53002 * 117.49979 * 148.68398 * 17 16 15 24 24 H 0.96999 * 119.99804 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47833 * 60.00354 * 9 7 2 26 26 H 1.09004 * 109.47204 * 299.99980 * 9 7 2 27 27 H 1.09002 * 109.47094 * 59.99835 * 10 9 7 28 28 H 1.09001 * 109.47078 * 300.00292 * 10 9 7 29 29 H 1.09002 * 109.46811 * 59.99839 * 11 10 9 30 30 H 1.09001 * 109.47211 * 300.00388 * 11 10 9 31 31 H 0.96997 * 120.00069 * 359.97438 * 12 11 10 32 32 H 0.96997 * 120.00333 * 359.97438 * 15 13 12 33 33 H 1.08990 * 109.47109 * 55.27468 * 16 15 13 34 34 H 1.08994 * 109.46828 * 295.26819 * 16 15 13 35 35 H 1.09000 * 109.47326 * 174.18228 * 18 17 16 36 36 H 1.09004 * 109.46721 * 54.18623 * 18 17 16 37 37 H 0.96999 * 119.99817 * 179.72411 * 20 19 18 38 38 H 0.97003 * 120.00038 * 359.71942 * 20 19 18 39 39 H 1.09002 * 117.50435 * 214.99918 * 22 17 16 40 40 H 1.08995 * 117.49924 * 0.02562 * 22 17 16 41 41 H 1.08996 * 117.49524 * 359.97438 * 23 17 16 42 42 H 1.08997 * 117.49548 * 144.99404 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 7 2.4323 -6.1006 0.0007 13 6 1.9829 -7.3713 0.0008 14 8 0.7876 -7.5935 0.0009 15 7 2.8588 -8.3957 0.0009 16 6 2.3704 -9.7770 0.0016 17 6 3.5557 -10.7370 -0.1174 18 6 4.3261 -10.6741 -1.4378 19 6 3.4366 -11.1414 -2.5610 20 7 3.8615 -11.0557 -3.8372 21 8 2.3405 -11.5992 -2.3162 22 6 4.3549 -11.0336 1.1532 23 6 3.4306 -12.1017 0.5632 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5568 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 2.8719 -3.6044 0.8895 28 1 2.8719 -3.6043 -0.8905 29 1 0.8534 -5.0451 -0.8897 30 1 0.8539 -5.0446 0.8903 31 1 3.3859 -5.9234 0.0003 32 1 3.8125 -8.2185 0.0005 33 1 1.6971 -9.9247 -0.8427 34 1 1.8361 -9.9729 0.9311 35 1 5.2038 -11.3176 -1.3775 36 1 4.6406 -9.6476 -1.6264 37 1 3.2906 -11.3602 -4.5598 38 1 4.7381 -10.6896 -4.0330 39 1 5.4294 -11.1839 1.0484 40 1 4.0360 -10.5451 2.0739 41 1 2.5040 -12.3152 1.0959 42 1 3.8970 -12.9545 0.0700 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227025749.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:38 Heat of formation + Delta-G solvation = -66.773162 kcal Electronic energy + Delta-G solvation = -21634.260406 eV Core-core repulsion = 18228.271784 eV Total energy + Delta-G solvation = -3405.988622 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.40705 -39.50609 -37.89125 -35.40116 -34.01250 -33.96809 -33.21382 -31.09624 -29.80407 -27.45001 -25.88014 -23.01074 -22.75988 -21.61885 -20.76261 -20.30227 -19.58378 -18.05268 -17.51121 -16.97247 -16.51085 -16.01032 -15.81769 -15.47668 -15.16466 -14.50544 -14.38853 -14.16465 -14.01016 -13.81928 -13.68482 -12.74775 -12.65757 -12.25521 -11.85029 -11.78807 -11.69452 -11.55483 -10.87368 -10.75880 -10.69394 -10.60689 -10.55275 -10.08956 -10.02062 -9.93351 -9.82768 -9.40780 -9.11626 -9.08627 -8.52091 -8.35315 -6.00003 -4.03228 2.34545 2.78463 3.09627 3.32640 3.37479 3.39242 3.46352 3.60035 4.18417 4.32855 4.41054 4.44999 4.48044 4.58245 4.83241 5.03073 5.20991 5.32067 5.35494 5.45460 5.60051 5.74671 5.77384 5.80908 5.85802 5.93469 6.22551 6.43188 6.52893 6.58552 6.66070 6.85929 6.96893 7.05991 7.14841 7.65854 7.79405 7.95370 7.99089 8.23341 8.39892 8.84324 9.03396 9.60674 11.11299 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.028756 B = 0.002468 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.490033 B =11344.126127 C =11559.427085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.119 4.119 11 C 0.135 3.865 12 N -0.743 5.743 13 C 0.698 3.302 14 O -0.592 6.592 15 N -0.750 5.750 16 C 0.176 3.824 17 C -0.127 4.127 18 C -0.105 4.105 19 C 0.515 3.485 20 N -0.860 5.860 21 O -0.529 6.529 22 C -0.170 4.170 23 C -0.148 4.148 24 H 0.262 0.738 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.392 0.608 32 H 0.392 0.608 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.401 0.599 38 H 0.400 0.600 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.680 -24.828 -3.241 29.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.397 5.397 13 C 0.398 3.602 14 O -0.470 6.470 15 N -0.406 5.406 16 C 0.052 3.948 17 C -0.128 4.128 18 C -0.145 4.145 19 C 0.300 3.700 20 N -0.424 5.424 21 O -0.404 6.404 22 C -0.207 4.207 23 C -0.185 4.185 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.038 0.962 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.225 0.775 32 H 0.225 0.775 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.232 0.768 38 H 0.228 0.772 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 12.678 -25.166 -2.879 28.325 hybrid contribution 1.639 1.222 -0.510 2.107 sum 14.317 -23.944 -3.389 28.103 Atomic orbital electron populations 1.69960 1.06056 1.26788 1.50469 1.25034 0.94856 0.99278 0.95309 0.86642 0.79552 0.83134 0.78548 1.20272 1.21277 1.20262 1.21170 0.92930 0.90980 1.51035 0.92723 1.19023 0.93867 0.90785 0.97698 1.21881 0.99760 0.93373 1.00740 1.21495 0.91324 0.84159 1.01863 1.45372 1.10304 1.04467 1.79569 1.16026 0.85327 0.80747 0.78087 1.90929 1.14196 1.84102 1.57735 1.45098 1.08711 1.05309 1.81494 1.20636 0.93538 0.77693 1.02924 1.21224 0.99527 0.99806 0.92250 1.21186 0.97991 1.03546 0.91761 1.20617 0.87485 0.77744 0.84137 1.43921 1.22427 1.67836 1.08242 1.90774 1.21464 1.44336 1.83872 1.23162 0.97887 1.03231 0.96404 1.22924 1.01731 0.91483 1.02403 0.92865 0.96252 0.96245 0.92803 0.92838 0.92031 0.92000 0.77461 0.77503 0.89954 0.91821 0.88390 0.88475 0.76828 0.77198 0.88491 0.88149 0.88211 0.88614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 11 C 0.13 2.48 5.67 -4.05 -0.02 2.45 16 12 N -0.74 -11.07 5.56 -65.23 -0.36 -11.44 16 13 C 0.70 11.25 8.57 -86.91 -0.74 10.50 16 14 O -0.59 -12.45 16.34 5.29 0.09 -12.37 16 15 N -0.75 -8.52 5.42 -65.23 -0.35 -8.87 16 16 C 0.18 2.04 5.31 -4.04 -0.02 2.02 16 17 C -0.13 -0.99 1.01 -154.51 -0.16 -1.15 16 18 C -0.10 -0.61 5.52 -27.88 -0.15 -0.77 16 19 C 0.52 4.41 7.86 -10.98 -0.09 4.32 16 20 N -0.86 -4.42 8.87 31.22 0.28 -4.15 16 21 O -0.53 -6.96 15.46 5.56 0.09 -6.88 16 22 C -0.17 -1.03 9.94 -26.69 -0.27 -1.29 16 23 C -0.15 -1.09 9.80 -26.69 -0.26 -1.35 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.39 4.55 8.49 -40.82 -0.35 4.20 16 32 H 0.39 3.14 8.19 -40.82 -0.33 2.80 16 33 H 0.08 1.22 6.69 -51.93 -0.35 0.87 16 34 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 35 H 0.10 0.34 8.09 -51.93 -0.42 -0.08 16 36 H 0.10 0.44 7.77 -51.93 -0.40 0.04 16 37 H 0.40 1.98 8.93 -40.82 -0.36 1.61 16 38 H 0.40 0.80 8.83 -40.82 -0.36 0.44 16 39 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 356.81 15.07 5.38 5.38 Total: -1.00 -37.00 356.81 -8.34 -45.35 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -6.77 Total: 3.51 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -2.40 Total: -0.75 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: 0.30 Total: -50.76 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: 0.17 Total: -19.24 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -37.00 -8.34 -45.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227025749.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.427 kcal (2) G-P(sol) polarization free energy of solvation -37.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds