Wall clock time and date at job start Tue Mar 31 2020 06:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 110.21579 * 2 1 4 4 N 1.46505 * 109.46736 * 301.92918 * 3 2 1 5 5 C 1.34781 * 119.99511 * 179.97438 * 4 3 2 6 6 O 1.21584 * 119.99970 * 359.97438 * 5 4 3 7 7 N 1.34771 * 119.99489 * 180.02562 * 5 4 3 8 8 C 1.46505 * 119.99622 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47212 * 179.97438 * 8 7 5 10 10 C 1.52992 * 109.47482 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47592 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00057 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00356 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00113 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 119.99923 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47375 * 89.99678 * 15 13 11 17 17 H 1.48508 * 109.47196 * 209.99673 * 15 13 11 18 18 H 1.48504 * 109.47051 * 329.99297 * 15 13 11 19 19 C 1.54476 * 110.24759 * 121.92954 * 2 1 3 20 20 C 1.54629 * 101.76402 * 93.67322 * 19 2 1 21 21 C 1.51278 * 104.19660 * 24.79718 * 20 19 2 22 22 O 1.21284 * 124.94074 * 163.74824 * 21 20 19 23 23 N 1.34417 * 110.11615 * 343.75138 * 21 20 19 24 24 H 1.09004 * 109.47160 * 59.30130 * 1 2 3 25 25 H 1.09004 * 109.46888 * 179.30229 * 1 2 3 26 26 H 1.08994 * 109.46867 * 299.29852 * 1 2 3 27 27 H 1.08994 * 109.47144 * 181.93142 * 3 2 1 28 28 H 1.08994 * 109.46765 * 61.92929 * 3 2 1 29 29 H 0.97003 * 120.00113 * 0.02562 * 4 3 2 30 30 H 0.96996 * 120.00772 * 359.97438 * 7 5 4 31 31 H 1.09002 * 109.47068 * 299.99729 * 8 7 5 32 32 H 1.09001 * 109.47372 * 59.99816 * 8 7 5 33 33 H 1.09002 * 109.47153 * 300.00008 * 9 8 7 34 34 H 1.08998 * 109.47533 * 59.99637 * 9 8 7 35 35 H 1.09002 * 109.47103 * 300.00247 * 10 9 8 36 36 H 1.09001 * 109.47066 * 60.00169 * 10 9 8 37 37 H 0.97008 * 120.00167 * 179.97438 * 14 13 11 38 38 H 1.09003 * 110.97172 * 211.79163 * 19 2 1 39 39 H 1.08998 * 110.96888 * 335.51738 * 19 2 1 40 40 H 1.09007 * 110.48653 * 143.47662 * 20 19 2 41 41 H 1.09004 * 110.48662 * 265.98465 * 20 19 2 42 42 H 0.97003 * 124.34789 * 179.57380 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4358 0.0000 4 7 1.5419 2.1464 -1.1723 5 6 1.8772 3.4351 -1.3810 6 8 2.6081 4.0079 -0.5962 7 7 1.4014 4.0889 -2.4592 8 6 1.7662 5.4895 -2.6864 9 6 1.0984 5.9889 -3.9691 10 6 1.4788 7.4517 -4.2061 11 6 0.8215 7.9434 -5.4698 12 1 0.1946 7.2791 -6.0462 13 6 1.0195 9.2416 -5.8898 14 7 0.4462 9.6706 -6.9929 15 14 2.1031 10.3909 -4.8927 16 1 3.5058 10.2858 -5.3686 17 1 1.6275 11.7879 -5.0585 18 1 2.0374 10.0127 -3.4581 19 6 2.0646 -0.7665 1.2300 20 6 2.2647 -2.1873 0.6536 21 6 2.4539 -1.9624 -0.8304 22 8 2.9125 -2.7766 -1.6034 23 7 2.0397 -0.7289 -1.1675 24 1 -0.3634 0.5247 -0.8837 25 1 -0.3633 -1.0276 -0.0125 26 1 -0.3633 0.5029 0.8962 27 1 3.1480 1.4219 -0.0346 28 1 1.7305 1.9438 0.9067 29 1 0.9579 1.6897 -1.7978 30 1 0.8180 3.6321 -3.0851 31 1 1.4314 6.0936 -1.8431 32 1 2.8487 5.5716 -2.7851 33 1 1.4335 5.3848 -4.8122 34 1 0.0159 5.9068 -3.8709 35 1 1.1434 8.0556 -3.3629 36 1 2.5613 7.5342 -4.3042 37 1 0.5852 10.5841 -7.2882 38 1 3.0113 -0.3466 1.5702 39 1 1.3306 -0.7716 2.0358 40 1 3.1511 -2.6527 1.0850 41 1 1.3837 -2.8019 0.8391 42 1 2.0736 -0.3669 -2.0668 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227026310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:04 Heat of formation + Delta-G solvation = -83.059262 kcal Electronic energy + Delta-G solvation = -21743.505523 eV Core-core repulsion = 18336.810683 eV Total energy + Delta-G solvation = -3406.694840 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.23007 -39.82504 -37.68440 -35.67048 -34.52895 -33.31824 -31.89554 -31.59123 -30.72974 -27.79584 -26.68877 -24.56894 -22.76149 -21.47340 -21.00839 -20.67044 -20.25782 -18.49210 -17.32204 -16.81740 -16.65639 -16.25420 -15.81458 -15.35081 -14.70632 -14.62723 -14.48847 -14.28746 -13.96802 -13.82047 -13.40616 -13.28810 -13.03444 -12.72549 -12.70273 -12.45219 -12.00447 -11.91384 -11.57476 -11.46269 -11.09590 -10.90846 -10.37280 -10.28595 -10.04331 -9.85582 -9.70958 -9.64823 -9.40217 -9.24569 -8.76719 -8.56945 -6.07743 -4.06606 2.18474 2.56564 2.85180 3.21965 3.30470 3.38048 3.42198 3.73670 3.82769 4.08422 4.24133 4.30864 4.43213 4.47230 4.74481 5.00779 5.11450 5.13856 5.17718 5.26393 5.32651 5.39718 5.40748 5.51432 5.61814 5.65608 5.99873 6.18255 6.32506 6.35172 6.43608 6.56940 6.62467 6.78343 6.87058 7.21213 7.34584 7.74027 7.81966 7.97394 8.48328 8.58738 8.95897 9.54457 11.05446 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.037774 B = 0.002435 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.067659 B =11495.532426 C =11760.422218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.144 3.856 3 C 0.139 3.861 4 N -0.753 5.753 5 C 0.701 3.299 6 O -0.591 6.591 7 N -0.740 5.740 8 C 0.133 3.867 9 C -0.113 4.113 10 C -0.011 4.011 11 C -0.522 4.522 12 H 0.072 0.928 13 C 0.066 3.934 14 N -0.903 5.903 15 Si 0.880 3.120 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.264 1.264 19 C -0.121 4.121 20 C -0.155 4.155 21 C 0.520 3.480 22 O -0.534 6.534 23 N -0.722 5.722 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.393 0.607 30 H 0.395 0.605 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.019 0.981 36 H 0.015 0.985 37 H 0.263 0.737 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.345 -23.084 18.328 29.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.057 3.943 3 C 0.014 3.986 4 N -0.410 5.410 5 C 0.401 3.599 6 O -0.469 6.469 7 N -0.395 5.395 8 C 0.009 3.991 9 C -0.151 4.151 10 C -0.049 4.049 11 C -0.560 4.560 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.542 5.542 15 Si 0.707 3.293 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.189 1.189 19 C -0.159 4.159 20 C -0.196 4.196 21 C 0.307 3.693 22 O -0.410 6.410 23 N -0.378 5.378 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.228 0.772 30 H 0.228 0.772 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.037 0.963 36 H 0.033 0.967 37 H 0.073 0.927 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 0.574 -22.841 18.654 29.496 hybrid contribution -0.084 0.544 -0.674 0.870 sum 0.491 -22.297 17.980 28.647 Atomic orbital electron populations 1.22201 0.92996 1.02973 1.03448 1.21352 0.94878 0.91581 0.86491 1.21493 0.99310 0.88841 0.88993 1.45103 1.55359 1.11662 1.28910 1.15970 0.80741 0.80934 0.82251 1.90929 1.41226 1.67340 1.47443 1.45335 1.53645 1.14381 1.26098 1.21532 1.00015 0.78440 0.99087 1.21705 0.99861 0.99371 0.94150 1.19499 0.96635 0.91065 0.97690 1.21091 1.30268 0.97569 1.07100 0.91036 1.25031 0.95532 0.98123 0.94824 1.69912 1.44243 1.17334 1.22695 0.86771 0.80999 0.80064 0.81440 1.20240 1.21372 1.18863 1.22666 1.03294 0.93713 0.96231 1.22357 1.05376 0.98545 0.93284 1.20888 0.76013 0.81376 0.91042 1.90784 1.45108 1.47566 1.57587 1.46407 1.64270 1.15853 1.11299 0.91775 0.91596 0.90465 0.90777 0.89951 0.77243 0.77169 0.91896 0.91941 0.92159 0.92131 0.96271 0.96715 0.92688 0.89172 0.88437 0.87779 0.87630 0.75098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.59 8.61 37.16 0.32 -0.27 16 2 C 0.14 0.67 0.84 -130.90 -0.11 0.56 16 3 C 0.14 0.99 4.76 -4.04 -0.02 0.97 16 4 N -0.75 -6.38 5.14 -65.22 -0.34 -6.72 16 5 C 0.70 9.38 8.57 -86.92 -0.74 8.63 16 6 O -0.59 -10.51 16.34 5.29 0.09 -10.43 16 7 N -0.74 -9.53 5.56 -65.22 -0.36 -9.90 16 8 C 0.13 2.14 5.67 -4.04 -0.02 2.11 16 9 C -0.11 -2.05 5.27 -26.74 -0.14 -2.19 16 10 C -0.01 -0.25 4.04 -27.89 -0.11 -0.36 16 11 C -0.52 -14.59 9.66 -34.44 -0.33 -14.93 16 12 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 13 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 14 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 15 Si 0.88 21.62 27.47 -169.99 -4.67 16.96 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 19 C -0.12 -0.39 6.21 -25.10 -0.16 -0.54 16 20 C -0.16 -0.71 6.86 -26.74 -0.18 -0.89 16 21 C 0.52 4.47 8.43 -10.86 -0.09 4.38 16 22 O -0.53 -7.17 18.03 5.55 0.10 -7.07 16 23 N -0.72 -4.68 5.43 -46.61 -0.25 -4.93 16 24 H 0.06 0.26 6.79 -51.93 -0.35 -0.10 16 25 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.39 2.36 7.04 -40.82 -0.29 2.07 16 30 H 0.39 3.97 8.49 -40.82 -0.35 3.62 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 36 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.09 0.28 7.91 -51.93 -0.41 -0.13 16 39 H 0.10 0.13 7.89 -51.93 -0.41 -0.27 16 40 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.41 2.67 8.72 -40.82 -0.36 2.31 16 LS Contribution 346.39 15.07 5.22 5.22 Total: -1.00 -36.38 346.39 -7.88 -44.26 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -6.74 Total: 0.18 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -1.69 Total: -0.71 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: -0.18 Total: -48.41 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: 0.19 Total: -17.50 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.38 -7.88 -44.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227026310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.802 kcal (2) G-P(sol) polarization free energy of solvation -36.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds