Wall clock time and date at job start Tue Mar 31 2020 06:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 110.21579 * 2 1 4 4 N 1.46505 * 109.46736 * 301.92918 * 3 2 1 5 5 C 1.34781 * 119.99511 * 179.97438 * 4 3 2 6 6 O 1.21584 * 119.99970 * 359.97438 * 5 4 3 7 7 N 1.34771 * 119.99489 * 180.02562 * 5 4 3 8 8 C 1.46505 * 119.99622 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47212 * 179.97438 * 8 7 5 10 10 C 1.52992 * 109.47482 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47592 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00057 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00356 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00113 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 119.99923 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47375 * 89.99678 * 15 13 11 17 17 H 1.48508 * 109.47196 * 209.99673 * 15 13 11 18 18 H 1.48504 * 109.47051 * 329.99297 * 15 13 11 19 19 C 1.54476 * 110.24759 * 121.92954 * 2 1 3 20 20 C 1.54629 * 101.76402 * 93.67322 * 19 2 1 21 21 C 1.51278 * 104.19660 * 24.79718 * 20 19 2 22 22 O 1.21284 * 124.94074 * 163.74824 * 21 20 19 23 23 N 1.34417 * 110.11615 * 343.75138 * 21 20 19 24 24 H 1.09004 * 109.47160 * 59.30130 * 1 2 3 25 25 H 1.09004 * 109.46888 * 179.30229 * 1 2 3 26 26 H 1.08994 * 109.46867 * 299.29852 * 1 2 3 27 27 H 1.08994 * 109.47144 * 181.93142 * 3 2 1 28 28 H 1.08994 * 109.46765 * 61.92929 * 3 2 1 29 29 H 0.97003 * 120.00113 * 0.02562 * 4 3 2 30 30 H 0.96996 * 120.00772 * 359.97438 * 7 5 4 31 31 H 1.09002 * 109.47068 * 299.99729 * 8 7 5 32 32 H 1.09001 * 109.47372 * 59.99816 * 8 7 5 33 33 H 1.09002 * 109.47153 * 300.00008 * 9 8 7 34 34 H 1.08998 * 109.47533 * 59.99637 * 9 8 7 35 35 H 1.09002 * 109.47103 * 300.00247 * 10 9 8 36 36 H 1.09001 * 109.47066 * 60.00169 * 10 9 8 37 37 H 0.97008 * 120.00167 * 179.97438 * 14 13 11 38 38 H 1.09003 * 110.97172 * 211.79163 * 19 2 1 39 39 H 1.08998 * 110.96888 * 335.51738 * 19 2 1 40 40 H 1.09007 * 110.48653 * 143.47662 * 20 19 2 41 41 H 1.09004 * 110.48662 * 265.98465 * 20 19 2 42 42 H 0.97003 * 124.34789 * 179.57380 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4358 0.0000 4 7 1.5419 2.1464 -1.1723 5 6 1.8772 3.4351 -1.3810 6 8 2.6081 4.0079 -0.5962 7 7 1.4014 4.0889 -2.4592 8 6 1.7662 5.4895 -2.6864 9 6 1.0984 5.9889 -3.9691 10 6 1.4788 7.4517 -4.2061 11 6 0.8215 7.9434 -5.4698 12 1 0.1946 7.2791 -6.0462 13 6 1.0195 9.2416 -5.8898 14 7 0.4462 9.6706 -6.9929 15 14 2.1031 10.3909 -4.8927 16 1 3.5058 10.2858 -5.3686 17 1 1.6275 11.7879 -5.0585 18 1 2.0374 10.0127 -3.4581 19 6 2.0646 -0.7665 1.2300 20 6 2.2647 -2.1873 0.6536 21 6 2.4539 -1.9624 -0.8304 22 8 2.9125 -2.7766 -1.6034 23 7 2.0397 -0.7289 -1.1675 24 1 -0.3634 0.5247 -0.8837 25 1 -0.3633 -1.0276 -0.0125 26 1 -0.3633 0.5029 0.8962 27 1 3.1480 1.4219 -0.0346 28 1 1.7305 1.9438 0.9067 29 1 0.9579 1.6897 -1.7978 30 1 0.8180 3.6321 -3.0851 31 1 1.4314 6.0936 -1.8431 32 1 2.8487 5.5716 -2.7851 33 1 1.4335 5.3848 -4.8122 34 1 0.0159 5.9068 -3.8709 35 1 1.1434 8.0556 -3.3629 36 1 2.5613 7.5342 -4.3042 37 1 0.5852 10.5841 -7.2882 38 1 3.0113 -0.3466 1.5702 39 1 1.3306 -0.7716 2.0358 40 1 3.1511 -2.6527 1.0850 41 1 1.3837 -2.8019 0.8391 42 1 2.0736 -0.3669 -2.0668 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227026310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:04 Heat of formation + Delta-G solvation = -112.414643 kcal Electronic energy + Delta-G solvation = -21744.778468 eV Core-core repulsion = 18336.810683 eV Total energy + Delta-G solvation = -3407.967785 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.81570 -40.82523 -38.42127 -37.02710 -35.42561 -35.11983 -33.26720 -32.33643 -31.41221 -29.06039 -27.60831 -25.29446 -24.22441 -22.28271 -22.07173 -21.61097 -21.13626 -19.47803 -18.93888 -17.96589 -17.30194 -17.14006 -16.82218 -16.33734 -16.11243 -15.72459 -15.42308 -15.26194 -15.00611 -14.75468 -14.62671 -14.05356 -13.77940 -13.67404 -13.62605 -13.36140 -13.17996 -12.79951 -12.71608 -12.67478 -11.99487 -11.92460 -11.80217 -11.77685 -11.58477 -11.33288 -11.28243 -10.97331 -10.75846 -10.40131 -10.23100 -9.77769 -8.29062 -6.32907 1.37685 1.39101 1.51003 1.54744 1.67874 2.13874 2.32610 2.36863 3.06851 3.22676 3.38310 3.42745 3.74905 3.91750 4.10835 4.12280 4.23358 4.40330 4.52301 4.59296 4.72580 4.74610 4.86536 4.91663 4.92872 4.95400 5.04934 5.11030 5.12899 5.33217 5.40368 5.43866 5.53376 5.57353 5.65671 5.81740 5.95531 6.00021 6.27832 6.75260 7.06471 7.20007 7.32012 7.56641 8.87302 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.037774 B = 0.002435 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.067659 B =11495.532426 C =11760.422218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.151 3.849 3 C 0.138 3.862 4 N -0.733 5.733 5 C 0.699 3.301 6 O -0.636 6.636 7 N -0.733 5.733 8 C 0.147 3.853 9 C -0.099 4.099 10 C -0.012 4.012 11 C -0.530 4.530 12 H 0.037 0.963 13 C 0.003 3.997 14 N -0.951 5.951 15 Si 0.948 3.052 16 H -0.269 1.269 17 H -0.285 1.285 18 H -0.246 1.246 19 C -0.114 4.114 20 C -0.148 4.148 21 C 0.510 3.490 22 O -0.593 6.593 23 N -0.718 5.718 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.408 0.592 30 H 0.410 0.590 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.022 0.978 36 H 0.019 0.981 37 H 0.266 0.734 38 H 0.092 0.908 39 H 0.126 0.874 40 H 0.110 0.890 41 H 0.125 0.875 42 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.474 -23.800 20.794 31.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.065 3.935 3 C 0.013 3.987 4 N -0.390 5.390 5 C 0.399 3.601 6 O -0.518 6.518 7 N -0.388 5.388 8 C 0.022 3.978 9 C -0.137 4.137 10 C -0.050 4.050 11 C -0.568 4.568 12 H 0.056 0.944 13 C -0.193 4.193 14 N -0.592 5.592 15 Si 0.771 3.229 16 H -0.194 1.194 17 H -0.211 1.211 18 H -0.169 1.169 19 C -0.152 4.152 20 C -0.188 4.188 21 C 0.298 3.702 22 O -0.474 6.474 23 N -0.372 5.372 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.109 0.891 27 H 0.077 0.923 28 H 0.106 0.894 29 H 0.245 0.755 30 H 0.246 0.754 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.040 0.960 36 H 0.037 0.963 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.144 0.856 40 H 0.128 0.872 41 H 0.143 0.857 42 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 0.397 -23.596 21.132 31.677 hybrid contribution -0.107 0.718 -1.495 1.662 sum 0.290 -22.878 19.636 30.151 Atomic orbital electron populations 1.22210 0.91615 1.03611 1.04019 1.21435 0.95697 0.89886 0.86501 1.21613 0.98548 0.90068 0.88450 1.44946 1.54617 1.10019 1.29440 1.16113 0.80318 0.82020 0.81684 1.90902 1.43247 1.68688 1.48923 1.45050 1.53899 1.13335 1.26565 1.21129 0.99083 0.80092 0.97472 1.21467 1.00322 0.96502 0.95421 1.19466 0.96307 0.94064 0.95211 1.21470 1.29617 0.97234 1.08481 0.94447 1.25996 0.97186 1.00179 0.95978 1.70060 1.46309 1.18016 1.24780 0.85694 0.79022 0.77571 0.80599 1.19372 1.21073 1.16949 1.22756 1.04298 0.92122 0.96021 1.22395 1.06509 0.99795 0.90070 1.21622 0.74920 0.81149 0.92518 1.90748 1.47836 1.49367 1.59438 1.46531 1.63298 1.15535 1.11833 0.92058 0.90925 0.89110 0.92287 0.89411 0.75522 0.75379 0.92549 0.92853 0.91881 0.91636 0.95961 0.96282 0.92535 0.88920 0.85564 0.87205 0.85739 0.75431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.66 8.61 71.98 0.62 -0.04 16 2 C 0.15 1.04 0.84 4.06 0.00 1.04 16 3 C 0.14 1.69 4.76 86.38 0.41 2.10 16 4 N -0.73 -11.02 5.14 -478.53 -2.46 -13.48 16 5 C 0.70 17.61 8.57 179.05 1.53 19.14 16 6 O -0.64 -22.00 16.34 -3.98 -0.07 -22.06 16 7 N -0.73 -17.59 5.56 -478.53 -2.66 -20.25 16 8 C 0.15 4.52 5.67 86.38 0.49 5.01 16 9 C -0.10 -3.48 5.27 30.59 0.16 -3.32 16 10 C -0.01 -0.56 4.04 29.84 0.12 -0.44 16 11 C -0.53 -29.87 9.66 25.60 0.25 -29.62 16 12 H 0.04 2.29 7.99 -2.91 -0.02 2.27 16 13 C 0.00 0.20 5.47 84.65 0.46 0.66 16 14 N -0.95 -59.28 13.96 21.45 0.30 -58.98 16 15 Si 0.95 44.16 27.47 68.60 1.88 46.05 16 16 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 17 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 18 H -0.25 -10.66 6.54 99.48 0.65 -10.01 16 19 C -0.11 -0.37 6.21 31.65 0.20 -0.18 16 20 C -0.15 -1.01 6.86 30.59 0.21 -0.80 16 21 C 0.51 8.38 8.43 87.90 0.74 9.12 16 22 O -0.59 -16.29 18.03 -3.04 -0.05 -16.34 16 23 N -0.72 -8.40 5.43 -419.97 -2.28 -10.68 16 24 H 0.06 0.31 6.79 -2.39 -0.02 0.29 16 25 H 0.07 0.27 8.14 -2.38 -0.02 0.25 16 26 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.41 3.94 7.04 -92.71 -0.65 3.29 16 30 H 0.41 7.34 8.49 -92.71 -0.79 6.56 16 31 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 33 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.02 0.99 7.20 -2.39 -0.02 0.97 16 36 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 37 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 38 H 0.09 0.31 7.91 -2.39 -0.02 0.29 16 39 H 0.13 -0.23 7.89 -2.39 -0.02 -0.25 16 40 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 41 H 0.12 0.42 8.14 -2.38 -0.02 0.40 16 42 H 0.41 4.96 8.72 -92.71 -0.81 4.15 16 Total: -1.00 -80.96 346.39 -1.40 -82.36 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -1.26 Total: 10.71 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 5.20 Total: 2.67 kcal Atomic # 7 Polarization: -96.29 SS G_CDS: -7.10 Total: -103.39 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -0.12 Total: -38.41 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.88 Total: 46.05 kcal Total: -80.96 -1.40 -82.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227026310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.054 kcal (2) G-P(sol) polarization free energy of solvation -80.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds