Wall clock time and date at job start Tue Mar 31 2020 06:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39551 * 120.14380 * 35.24047 * 3 2 1 5 5 C 1.37947 * 119.85688 * 179.97438 * 4 3 2 6 6 C 1.38359 * 120.14382 * 359.97438 * 5 4 3 7 7 C 1.38325 * 120.29028 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.93319 * 180.27503 * 7 6 5 9 9 N 1.46900 * 109.47409 * 263.77404 * 8 7 6 10 10 C 1.46903 * 110.99839 * 196.64485 * 9 8 7 11 11 C 1.50698 * 109.46618 * 178.67909 * 10 9 8 12 12 H 1.08001 * 120.00488 * 354.02899 * 11 10 9 13 13 C 1.37880 * 119.99533 * 174.02843 * 11 10 9 14 14 N 1.31508 * 120.00296 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99646 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47511 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46912 * 120.00348 * 15 13 11 18 18 H 1.48506 * 109.47257 * 239.99784 * 15 13 11 19 19 C 1.46900 * 110.99841 * 72.68850 * 9 8 7 20 20 C 1.54265 * 110.02849 * 217.92444 * 19 9 8 21 21 C 1.54971 * 104.15586 * 217.14024 * 20 19 9 22 22 C 1.54890 * 102.78114 * 37.88891 * 21 20 19 23 23 C 1.53875 * 110.02984 * 100.71006 * 19 9 8 24 24 C 1.37997 * 120.13682 * 0.02562 * 7 6 5 25 25 H 4.52078 * 14.02156 * 359.97438 * 4 2 1 26 26 H 1.08000 * 120.07219 * 359.97438 * 4 3 2 27 27 H 1.08000 * 119.92888 * 180.02562 * 5 4 3 28 28 H 1.08011 * 119.86234 * 180.02562 * 6 5 4 29 29 H 1.08997 * 109.46791 * 23.77797 * 8 7 6 30 30 H 1.09002 * 109.46804 * 143.77315 * 8 7 6 31 31 H 1.08990 * 109.47171 * 298.67874 * 10 9 8 32 32 H 1.09002 * 109.46803 * 58.68138 * 10 9 8 33 33 H 0.97004 * 120.00183 * 179.97438 * 14 13 11 34 34 H 1.08992 * 110.01780 * 339.31789 * 19 9 8 35 35 H 1.09000 * 110.49052 * 335.77937 * 20 19 9 36 36 H 1.08992 * 110.48761 * 98.42948 * 20 19 9 37 37 H 1.09003 * 110.71836 * 279.57266 * 21 20 19 38 38 H 1.09001 * 110.92194 * 156.29870 * 21 20 19 39 39 H 1.08990 * 110.48526 * 203.40973 * 22 21 20 40 40 H 1.08993 * 110.59670 * 80.81757 * 22 21 20 41 41 H 1.09003 * 110.03016 * 238.57094 * 23 19 9 42 42 H 1.09003 * 110.03395 * 359.97438 * 23 19 9 43 43 H 1.07996 * 120.07211 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3072 -0.9847 -0.6963 5 6 4.6866 -0.9781 -0.6928 6 6 5.3750 0.0029 -0.0013 7 6 4.6860 0.9824 0.6910 8 6 5.4439 2.0506 1.4363 9 7 5.5675 1.6680 2.8492 10 6 5.9358 2.8240 3.6773 11 6 6.0214 2.4007 5.1211 12 1 5.7292 1.4017 5.4092 13 6 6.4727 3.2888 6.0743 14 7 6.8281 4.5055 5.7236 15 14 6.5781 2.7643 7.8641 16 1 6.1230 1.3568 7.9951 17 1 7.9837 2.8750 8.3304 18 1 5.7121 3.6440 8.6896 19 6 6.5320 0.5725 3.0154 20 6 6.0376 -0.4067 4.1001 21 6 7.3301 -0.8401 4.8371 22 6 8.1600 0.4673 4.8708 23 6 7.8810 1.1278 3.5049 24 6 3.3061 0.9864 0.6962 25 1 -1.0500 -0.0010 -0.0001 26 1 2.7711 -1.7507 -1.2368 27 1 5.2305 -1.7399 -1.2316 28 1 6.4551 0.0039 -0.0019 29 1 6.4372 2.1616 1.0016 30 1 4.9069 2.9962 1.3616 31 1 6.9026 3.2094 3.3538 32 1 5.1803 3.6025 3.5711 33 1 7.1453 5.1304 6.3943 34 1 6.6656 0.0464 2.0703 35 1 5.3575 0.0967 4.7872 36 1 5.5510 -1.2682 3.6431 37 1 7.8526 -1.6149 4.2760 38 1 7.1061 -1.1816 5.8477 39 1 9.2213 0.2428 4.9763 40 1 7.8252 1.1132 5.6824 41 1 8.6695 0.8704 2.7976 42 1 7.8202 2.2101 3.6187 43 1 2.7692 1.7515 1.2374 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231659613.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:48 Heat of formation + Delta-G solvation = 95.595375 kcal Electronic energy + Delta-G solvation = -22383.100685 eV Core-core repulsion = 19395.002154 eV Total energy + Delta-G solvation = -2988.098531 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.53789 -38.35248 -34.66024 -33.58690 -32.67088 -31.05896 -30.09540 -28.01485 -27.14990 -26.88061 -24.07940 -23.23570 -22.00048 -21.24141 -19.84958 -18.47765 -17.99403 -16.60467 -16.26539 -15.44773 -15.25680 -15.12941 -14.75548 -14.31390 -13.82667 -13.52085 -13.27648 -13.01752 -12.82245 -12.44985 -12.18229 -11.82119 -11.41799 -11.14348 -11.12805 -11.02063 -10.90603 -10.73267 -10.60344 -10.39276 -10.36008 -10.21864 -10.09886 -9.91838 -9.50454 -9.17996 -8.78646 -8.61517 -8.38322 -8.34023 -7.14117 -6.02951 -3.98887 1.07172 1.54737 2.76898 3.08776 3.28631 3.38101 3.41366 4.09859 4.29494 4.42679 4.95002 5.02569 5.11763 5.25730 5.32663 5.45482 5.49537 5.52125 5.63740 5.69847 5.82508 5.96674 6.04321 6.14185 6.21848 6.25003 6.34663 6.40746 6.47412 6.52672 6.57518 6.61904 6.70777 6.77361 6.83549 6.89651 7.01989 7.04895 7.09702 7.37982 7.43142 7.54980 7.63403 7.94427 8.10052 8.22091 8.56879 9.08010 9.61268 11.08422 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.019547 B = 0.004846 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.067529 B = 5776.161447 C = 6267.186879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.136 4.136 3 C -0.002 4.002 4 C -0.105 4.105 5 C -0.123 4.123 6 C -0.105 4.105 7 C -0.057 4.057 8 C 0.086 3.914 9 N -0.527 5.527 10 C 0.185 3.815 11 C -0.500 4.500 12 H 0.081 0.919 13 C 0.057 3.943 14 N -0.899 5.899 15 Si 0.881 3.119 16 H -0.270 1.270 17 H -0.285 1.285 18 H -0.285 1.285 19 C 0.097 3.903 20 C -0.110 4.110 21 C -0.123 4.123 22 C -0.114 4.114 23 C -0.157 4.157 24 C -0.069 4.069 25 H 0.222 0.778 26 H 0.120 0.880 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.035 0.965 30 H 0.077 0.923 31 H 0.009 0.991 32 H 0.025 0.975 33 H 0.259 0.741 34 H 0.053 0.947 35 H 0.093 0.907 36 H 0.042 0.958 37 H 0.048 0.952 38 H 0.053 0.947 39 H 0.036 0.964 40 H 0.091 0.909 41 H 0.029 0.971 42 H 0.111 0.889 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.903 -9.298 -10.890 14.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.136 4.136 3 C -0.002 4.002 4 C -0.123 4.123 5 C -0.141 4.141 6 C -0.123 4.123 7 C -0.058 4.058 8 C -0.042 4.042 9 N -0.250 5.250 10 C 0.061 3.939 11 C -0.538 4.538 12 H 0.098 0.902 13 C -0.144 4.144 14 N -0.539 5.539 15 Si 0.709 3.291 16 H -0.194 1.194 17 H -0.211 1.211 18 H -0.212 1.212 19 C -0.012 4.012 20 C -0.147 4.147 21 C -0.161 4.161 22 C -0.152 4.152 23 C -0.194 4.194 24 C -0.088 4.088 25 H 0.239 0.761 26 H 0.138 0.862 27 H 0.140 0.860 28 H 0.139 0.861 29 H 0.054 0.946 30 H 0.095 0.905 31 H 0.026 0.974 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.111 0.889 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.109 0.891 41 H 0.048 0.952 42 H 0.128 0.872 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.282 -9.275 -10.652 14.759 hybrid contribution 0.742 0.057 0.766 1.068 sum -3.540 -9.218 -9.886 13.973 Atomic orbital electron populations 1.24798 0.95712 1.00158 1.00418 1.20152 0.92122 1.00697 1.00613 1.15953 0.86374 0.97285 1.00584 1.21053 0.94151 0.97812 0.99303 1.20956 0.93784 0.99036 1.00275 1.21212 0.99870 0.94393 0.96833 1.19912 0.93392 0.96572 0.95887 1.21059 0.97371 0.95347 0.90408 1.62424 1.48215 1.10854 1.03552 1.19967 0.94721 0.87153 0.92084 1.21514 1.41541 0.99618 0.91155 0.90155 1.24909 0.96023 0.94959 0.98509 1.69952 1.45117 1.05190 1.33642 0.86704 0.77666 0.78964 0.85750 1.19413 1.21076 1.21179 1.22068 0.90267 0.92167 0.96710 1.22582 0.97229 0.96963 0.97962 1.22450 0.97136 0.97365 0.99175 1.22381 0.96879 0.96181 0.99721 1.22915 0.95490 1.05274 0.95761 1.21089 0.93622 0.97508 0.96581 0.76128 0.86233 0.85962 0.86121 0.94644 0.90456 0.97371 0.95696 0.93115 0.92896 0.88892 0.93969 0.93334 0.92827 0.94471 0.89109 0.95181 0.87165 0.85459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.21 19.25 29.55 0.57 -1.64 16 2 C -0.14 -1.88 13.24 -38.84 -0.51 -2.40 16 3 C 0.00 -0.03 5.72 -107.00 -0.61 -0.64 16 4 C -0.10 -1.34 9.75 -39.20 -0.38 -1.72 16 5 C -0.12 -1.49 10.03 -39.64 -0.40 -1.88 16 6 C -0.10 -1.43 8.42 -39.50 -0.33 -1.76 16 7 C -0.06 -0.88 5.05 -104.68 -0.53 -1.41 16 8 C 0.09 1.49 5.02 -4.98 -0.03 1.47 16 9 N -0.53 -10.68 4.39 -228.19 -1.00 -11.68 16 10 C 0.19 4.45 4.18 -4.98 -0.02 4.43 16 11 C -0.50 -12.75 5.23 -34.44 -0.18 -12.93 16 12 H 0.08 2.04 3.91 -52.49 -0.21 1.83 16 13 C 0.06 1.51 5.14 -17.82 -0.09 1.42 16 14 N -0.90 -25.39 13.29 55.43 0.74 -24.66 16 15 Si 0.88 20.85 28.50 -169.99 -4.85 16.00 16 16 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 19 C 0.10 1.84 2.72 -66.60 -0.18 1.66 16 20 C -0.11 -2.08 5.88 -25.03 -0.15 -2.22 16 21 C -0.12 -2.18 6.90 -24.69 -0.17 -2.36 16 22 C -0.11 -2.25 6.17 -25.07 -0.15 -2.40 16 23 C -0.16 -3.12 5.63 -25.61 -0.14 -3.27 16 24 C -0.07 -1.08 9.43 -39.19 -0.37 -1.45 16 25 H 0.22 1.57 7.80 -54.09 -0.42 1.15 16 26 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 27 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 28 H 0.12 1.51 7.48 -52.48 -0.39 1.12 16 29 H 0.04 0.59 7.94 -51.93 -0.41 0.18 16 30 H 0.08 1.33 7.90 -51.93 -0.41 0.92 16 31 H 0.01 0.23 5.83 -51.93 -0.30 -0.07 16 32 H 0.03 0.65 8.06 -51.93 -0.42 0.24 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 34 H 0.05 0.93 5.53 -51.93 -0.29 0.64 16 35 H 0.09 2.00 5.40 -51.93 -0.28 1.72 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 2.04 4.69 -51.93 -0.24 1.79 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.11 2.56 3.98 -51.93 -0.21 2.35 16 43 H 0.13 2.00 8.06 -52.49 -0.42 1.57 16 LS Contribution 336.99 15.07 5.08 5.08 Total: -1.00 -27.90 336.99 -9.81 -37.71 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -6.10 Total: 4.65 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: -3.68 Total: -27.11 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: -0.26 Total: -36.34 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.85 Total: 16.00 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.90 -9.81 -37.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231659613.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.309 kcal (2) G-P(sol) polarization free energy of solvation -27.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds