Wall clock time and date at job start Tue Mar 31 2020 06:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39551 * 120.14380 * 35.24047 * 3 2 1 5 5 C 1.37947 * 119.85688 * 179.97438 * 4 3 2 6 6 C 1.38359 * 120.14382 * 359.97438 * 5 4 3 7 7 C 1.38325 * 120.29028 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.93319 * 180.27503 * 7 6 5 9 9 N 1.46900 * 109.47409 * 263.77404 * 8 7 6 10 10 C 1.46903 * 110.99839 * 196.64485 * 9 8 7 11 11 C 1.50698 * 109.46618 * 178.67909 * 10 9 8 12 12 H 1.08001 * 120.00488 * 354.02899 * 11 10 9 13 13 C 1.37880 * 119.99533 * 174.02843 * 11 10 9 14 14 N 1.31508 * 120.00296 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99646 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47511 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46912 * 120.00348 * 15 13 11 18 18 H 1.48506 * 109.47257 * 239.99784 * 15 13 11 19 19 C 1.46900 * 110.99841 * 72.68850 * 9 8 7 20 20 C 1.54265 * 110.02849 * 217.92444 * 19 9 8 21 21 C 1.54971 * 104.15586 * 217.14024 * 20 19 9 22 22 C 1.54890 * 102.78114 * 37.88891 * 21 20 19 23 23 C 1.53875 * 110.02984 * 100.71006 * 19 9 8 24 24 C 1.37997 * 120.13682 * 0.02562 * 7 6 5 25 25 H 4.52078 * 14.02156 * 359.97438 * 4 2 1 26 26 H 1.08000 * 120.07219 * 359.97438 * 4 3 2 27 27 H 1.08000 * 119.92888 * 180.02562 * 5 4 3 28 28 H 1.08011 * 119.86234 * 180.02562 * 6 5 4 29 29 H 1.08997 * 109.46791 * 23.77797 * 8 7 6 30 30 H 1.09002 * 109.46804 * 143.77315 * 8 7 6 31 31 H 1.08990 * 109.47171 * 298.67874 * 10 9 8 32 32 H 1.09002 * 109.46803 * 58.68138 * 10 9 8 33 33 H 0.97004 * 120.00183 * 179.97438 * 14 13 11 34 34 H 1.08992 * 110.01780 * 339.31789 * 19 9 8 35 35 H 1.09000 * 110.49052 * 335.77937 * 20 19 9 36 36 H 1.08992 * 110.48761 * 98.42948 * 20 19 9 37 37 H 1.09003 * 110.71836 * 279.57266 * 21 20 19 38 38 H 1.09001 * 110.92194 * 156.29870 * 21 20 19 39 39 H 1.08990 * 110.48526 * 203.40973 * 22 21 20 40 40 H 1.08993 * 110.59670 * 80.81757 * 22 21 20 41 41 H 1.09003 * 110.03016 * 238.57094 * 23 19 9 42 42 H 1.09003 * 110.03395 * 359.97438 * 23 19 9 43 43 H 1.07996 * 120.07211 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3072 -0.9847 -0.6963 5 6 4.6866 -0.9781 -0.6928 6 6 5.3750 0.0029 -0.0013 7 6 4.6860 0.9824 0.6910 8 6 5.4439 2.0506 1.4363 9 7 5.5675 1.6680 2.8492 10 6 5.9358 2.8240 3.6773 11 6 6.0214 2.4007 5.1211 12 1 5.7292 1.4017 5.4092 13 6 6.4727 3.2888 6.0743 14 7 6.8281 4.5055 5.7236 15 14 6.5781 2.7643 7.8641 16 1 6.1230 1.3568 7.9951 17 1 7.9837 2.8750 8.3304 18 1 5.7121 3.6440 8.6896 19 6 6.5320 0.5725 3.0154 20 6 6.0376 -0.4067 4.1001 21 6 7.3301 -0.8401 4.8371 22 6 8.1600 0.4673 4.8708 23 6 7.8810 1.1278 3.5049 24 6 3.3061 0.9864 0.6962 25 1 -1.0500 -0.0010 -0.0001 26 1 2.7711 -1.7507 -1.2368 27 1 5.2305 -1.7399 -1.2316 28 1 6.4551 0.0039 -0.0019 29 1 6.4372 2.1616 1.0016 30 1 4.9069 2.9962 1.3616 31 1 6.9026 3.2094 3.3538 32 1 5.1803 3.6025 3.5711 33 1 7.1453 5.1304 6.3943 34 1 6.6656 0.0464 2.0703 35 1 5.3575 0.0967 4.7872 36 1 5.5510 -1.2682 3.6431 37 1 7.8526 -1.6149 4.2760 38 1 7.1061 -1.1816 5.8477 39 1 9.2213 0.2428 4.9763 40 1 7.8252 1.1132 5.6824 41 1 8.6695 0.8704 2.7976 42 1 7.8202 2.2101 3.6187 43 1 2.7692 1.7515 1.2374 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231659613.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:47 Heat of formation + Delta-G solvation = 81.968428 kcal Electronic energy + Delta-G solvation = -22383.691594 eV Core-core repulsion = 19395.002154 eV Total energy + Delta-G solvation = -2988.689440 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.83917 -39.72102 -36.05881 -34.92147 -34.37510 -32.35916 -31.13477 -29.64732 -28.90921 -28.30711 -25.68594 -24.28944 -23.74192 -22.40014 -21.36456 -19.81794 -19.27364 -18.46490 -17.29505 -17.01851 -16.88559 -16.33905 -16.08148 -15.96729 -15.31255 -14.74798 -14.60220 -14.49076 -14.01694 -13.95752 -13.77944 -13.38010 -12.95568 -12.81826 -12.71832 -12.38886 -12.26955 -12.19292 -12.04967 -11.97334 -11.68325 -11.63053 -11.53049 -11.42410 -11.20122 -10.89013 -10.61746 -10.38436 -9.72571 -9.39580 -8.81206 -8.10064 -6.10058 0.04126 0.47344 1.38161 1.42300 1.51915 1.81601 2.08653 2.44605 3.02469 3.25226 3.40869 3.47801 3.90052 3.97297 4.02306 4.09029 4.21864 4.31303 4.36255 4.46038 4.62872 4.70195 4.74259 4.81269 4.82988 4.89692 5.00093 5.04287 5.11427 5.15912 5.22782 5.23500 5.26343 5.33341 5.39347 5.50894 5.54004 5.57259 5.72531 5.77179 5.90840 5.95679 6.05042 6.21556 6.46547 6.61712 6.77795 7.05096 7.53941 9.02237 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.019547 B = 0.004846 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.067529 B = 5776.161447 C = 6267.186879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.196 4.196 3 C -0.011 4.011 4 C -0.104 4.104 5 C -0.111 4.111 6 C -0.109 4.109 7 C -0.070 4.070 8 C 0.089 3.911 9 N -0.533 5.533 10 C 0.201 3.799 11 C -0.491 4.491 12 H 0.084 0.916 13 C 0.010 3.990 14 N -0.937 5.937 15 Si 0.935 3.065 16 H -0.259 1.259 17 H -0.282 1.282 18 H -0.289 1.289 19 C 0.098 3.902 20 C -0.108 4.108 21 C -0.113 4.113 22 C -0.119 4.119 23 C -0.154 4.154 24 C -0.091 4.091 25 H 0.261 0.739 26 H 0.144 0.856 27 H 0.158 0.842 28 H 0.135 0.865 29 H 0.041 0.959 30 H 0.064 0.936 31 H -0.011 1.011 32 H -0.009 1.009 33 H 0.258 0.742 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.072 0.928 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.161 -12.584 -12.016 17.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.196 4.196 3 C -0.011 4.011 4 C -0.122 4.122 5 C -0.129 4.129 6 C -0.128 4.128 7 C -0.070 4.070 8 C -0.038 4.038 9 N -0.256 5.256 10 C 0.075 3.925 11 C -0.529 4.529 12 H 0.102 0.898 13 C -0.187 4.187 14 N -0.579 5.579 15 Si 0.762 3.238 16 H -0.183 1.183 17 H -0.208 1.208 18 H -0.215 1.215 19 C -0.011 4.011 20 C -0.146 4.146 21 C -0.151 4.151 22 C -0.156 4.156 23 C -0.192 4.192 24 C -0.110 4.110 25 H 0.277 0.723 26 H 0.161 0.839 27 H 0.176 0.824 28 H 0.152 0.848 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.007 0.993 32 H 0.009 0.991 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.547 -12.583 -11.786 17.830 hybrid contribution 0.716 1.051 1.007 1.622 sum -3.831 -11.531 -10.779 16.243 Atomic orbital electron populations 1.25776 0.96522 0.97519 0.97690 1.20547 0.92857 1.03140 1.03047 1.16153 0.87208 0.97268 1.00424 1.21403 0.94679 0.97561 0.98564 1.21326 0.93640 0.98805 0.99093 1.21376 1.00601 0.94112 0.96662 1.19703 0.93249 0.97003 0.97071 1.21022 0.97873 0.95948 0.88991 1.62317 1.48604 1.09732 1.04967 1.19627 0.92532 0.87757 0.92552 1.21755 1.39906 0.99471 0.91769 0.89798 1.25574 0.96108 0.94936 1.02055 1.70077 1.46815 1.06354 1.34677 0.85837 0.77519 0.78920 0.81517 1.18326 1.20810 1.21507 1.22156 0.89354 0.91665 0.97877 1.22518 0.97473 0.97205 0.97434 1.22418 0.96000 0.96861 0.99839 1.22343 0.98328 0.96765 0.98190 1.22818 0.96784 1.02846 0.96795 1.21026 0.93866 0.98200 0.97882 0.72297 0.83865 0.82412 0.84751 0.94044 0.91779 0.99325 0.99099 0.93347 0.90602 0.92025 0.92156 0.90377 0.92301 0.92690 0.92319 0.93060 0.90975 0.87281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 19.25 74.32 1.43 -1.82 16 2 C -0.20 -5.24 13.24 30.01 0.40 -4.84 16 3 C -0.01 -0.30 5.72 -21.41 -0.12 -0.42 16 4 C -0.10 -2.39 9.75 22.52 0.22 -2.17 16 5 C -0.11 -2.32 10.03 22.23 0.22 -2.09 16 6 C -0.11 -2.74 8.42 22.32 0.19 -2.55 16 7 C -0.07 -2.15 5.05 -19.90 -0.10 -2.25 16 8 C 0.09 3.20 5.02 85.56 0.43 3.63 16 9 N -0.53 -22.21 4.39 -875.85 -3.84 -26.06 16 10 C 0.20 10.20 4.18 85.56 0.36 10.56 16 11 C -0.49 -25.88 5.23 25.60 0.13 -25.75 16 12 H 0.08 4.34 3.91 -2.91 -0.01 4.33 16 13 C 0.01 0.56 5.14 84.66 0.43 0.99 16 14 N -0.94 -55.17 13.29 21.45 0.28 -54.88 16 15 Si 0.94 43.65 28.50 68.60 1.96 45.60 16 16 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 18 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 19 C 0.10 3.63 2.72 45.64 0.12 3.75 16 20 C -0.11 -3.94 5.88 31.70 0.19 -3.75 16 21 C -0.11 -3.71 6.90 31.91 0.22 -3.49 16 22 C -0.12 -4.52 6.17 31.67 0.20 -4.33 16 23 C -0.15 -6.07 5.63 31.32 0.18 -5.90 16 24 C -0.09 -2.90 9.43 22.52 0.21 -2.68 16 25 H 0.26 2.70 7.80 -4.42 -0.03 2.67 16 26 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 27 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 28 H 0.13 2.96 7.48 -2.91 -0.02 2.94 16 29 H 0.04 1.41 7.94 -2.39 -0.02 1.39 16 30 H 0.06 2.39 7.90 -2.39 -0.02 2.37 16 31 H -0.01 -0.57 5.83 -2.39 -0.01 -0.59 16 32 H -0.01 -0.51 8.06 -2.39 -0.02 -0.53 16 33 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 34 H 0.08 2.48 5.53 -2.39 -0.01 2.46 16 35 H 0.06 2.64 5.40 -2.39 -0.01 2.62 16 36 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.06 2.62 4.69 -2.39 -0.01 2.61 16 41 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.07 3.46 3.98 -2.39 -0.01 3.45 16 43 H 0.11 3.71 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -63.10 336.99 4.10 -59.00 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 1.00 Total: 19.45 kcal Atomic # 6 Polarization: -47.82 SS G_CDS: 4.71 Total: -43.11 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -3.56 Total: -80.94 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.96 Total: 45.60 kcal Total: -63.10 4.10 -59.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231659613.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.968 kcal (2) G-P(sol) polarization free energy of solvation -63.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds