Wall clock time and date at job start Tue Mar 31 2020 06:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47611 * 2 1 4 4 C 1.53000 * 109.47306 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46940 * 179.97438 * 4 3 2 6 6 C 1.36936 * 120.00036 * 95.92052 * 5 4 3 7 7 H 1.07997 * 119.99968 * 5.52438 * 6 5 4 8 8 C 1.38813 * 120.00035 * 185.51382 * 6 5 4 9 9 N 1.31616 * 120.00242 * 320.69139 * 8 6 5 10 10 Si 1.86803 * 119.99556 * 140.68749 * 8 6 5 11 11 H 1.48500 * 109.46911 * 90.00603 * 10 8 6 12 12 H 1.48497 * 109.47145 * 210.00004 * 10 8 6 13 13 H 1.48493 * 109.47547 * 330.00518 * 10 8 6 14 14 C 1.46498 * 119.99815 * 276.19495 * 5 4 3 15 15 C 1.50704 * 109.47350 * 277.05238 * 14 5 4 16 16 C 1.38372 * 125.78547 * 261.16052 * 15 14 5 17 17 C 1.38324 * 110.30932 * 179.88138 * 16 15 14 18 18 C 1.39497 * 108.42101 * 0.37926 * 17 16 15 19 19 C 1.39733 * 125.53708 * 179.72380 * 18 17 16 20 20 C 1.38570 * 127.52154 * 179.97438 * 19 18 17 21 21 C 1.38449 * 129.20173 * 0.02562 * 20 19 18 22 22 C 1.38508 * 130.46421 * 0.04076 * 21 20 19 23 23 C 1.38509 * 129.18909 * 359.96277 * 22 21 20 24 24 C 1.39438 * 125.78085 * 81.46497 * 15 14 5 25 25 H 1.09003 * 109.46569 * 59.99681 * 1 2 3 26 26 H 1.08993 * 109.47100 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47003 * 300.00232 * 1 2 3 28 28 H 1.09005 * 109.47072 * 239.99686 * 2 1 3 29 29 H 1.09009 * 109.46941 * 120.00130 * 2 1 3 30 30 H 1.09005 * 109.47159 * 59.99739 * 3 2 1 31 31 H 1.09001 * 109.46755 * 300.00155 * 3 2 1 32 32 H 1.08995 * 109.46978 * 59.99970 * 4 3 2 33 33 H 1.08995 * 109.47147 * 300.00095 * 4 3 2 34 34 H 0.97002 * 119.99970 * 179.97438 * 9 8 6 35 35 H 1.08997 * 109.47366 * 37.05387 * 14 5 4 36 36 H 1.09005 * 109.47103 * 157.05449 * 14 5 4 37 37 H 1.07994 * 124.84622 * 0.02562 * 16 15 14 38 38 H 1.07993 * 125.79187 * 180.15436 * 17 16 15 39 39 H 1.08000 * 116.23797 * 359.97438 * 19 18 17 40 40 H 1.08000 * 115.39702 * 180.02562 * 20 19 18 41 41 H 1.07998 * 114.76702 * 180.02562 * 21 20 19 42 42 H 1.08000 * 115.40066 * 179.97438 * 22 21 20 43 43 H 1.07999 * 116.23441 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.4016 3.4290 1.1794 7 1 4.3976 2.8621 2.0986 8 6 4.7546 4.7714 1.1934 9 7 5.4871 5.2695 0.2199 10 14 4.1900 5.8710 2.5940 11 1 5.2030 5.8492 3.6796 12 1 4.0268 7.2609 2.0973 13 1 2.8916 5.3771 3.1186 14 6 4.1741 3.5590 -1.2617 15 6 5.4763 3.2045 -1.9324 16 6 6.6384 3.9545 -1.8907 17 6 7.6388 3.3303 -2.6139 18 6 7.1242 2.1498 -3.1501 19 6 7.8295 1.2449 -3.9477 20 6 7.3612 0.0636 -4.5001 21 6 6.1040 -0.5087 -4.4056 22 6 4.9668 -0.0757 -3.7441 23 6 4.7777 1.0670 -2.9844 24 6 5.7125 2.0680 -2.7050 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 1.6768 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.9338 0.9284 -0.8891 33 1 3.9330 0.9286 0.8908 34 1 5.7335 6.2076 0.2296 35 1 3.3441 3.2916 -1.9156 36 1 4.1484 4.6302 -1.0615 37 1 6.7492 4.8921 -1.3664 38 1 8.6462 3.6968 -2.7445 39 1 8.8588 1.4953 -4.1580 40 1 8.0789 -0.4894 -5.0879 41 1 5.9919 -1.4442 -4.9334 42 1 4.1052 -0.7208 -3.8331 43 1 3.7940 1.2002 -2.5592 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237189223.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:35 Heat of formation + Delta-G solvation = 95.533011 kcal Electronic energy + Delta-G solvation = -22328.778133 eV Core-core repulsion = 19340.676897 eV Total energy + Delta-G solvation = -2988.101235 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.69044 -38.01515 -36.82327 -35.51145 -34.07913 -33.02120 -30.83536 -30.17230 -29.10212 -26.89399 -25.43096 -25.12026 -23.20714 -22.53101 -21.69596 -19.58680 -19.09834 -18.68775 -17.99869 -16.81132 -16.74232 -16.27040 -15.54118 -15.32857 -15.16670 -15.02957 -14.67316 -13.96996 -13.85440 -13.59818 -13.45838 -13.24837 -13.18796 -13.01269 -12.58261 -12.47072 -12.31139 -12.30750 -12.12125 -12.00601 -11.89772 -11.83795 -11.65348 -11.50628 -11.36436 -11.21760 -10.91926 -10.16238 -8.91010 -8.56509 -7.89436 -7.71817 -4.95855 -0.89044 -0.37095 1.44076 1.51423 1.59809 2.29376 2.55586 2.77005 2.82013 3.15635 3.75914 3.86279 4.07671 4.14768 4.17316 4.20390 4.29382 4.30239 4.38227 4.43169 4.57093 4.61285 4.69152 4.86421 4.94406 4.96145 5.04624 5.06695 5.08583 5.16753 5.21631 5.28476 5.42051 5.51112 5.52953 5.59717 5.66360 5.68415 5.75231 5.78910 5.80290 5.93214 6.24880 6.36878 6.48721 6.63776 7.20566 7.97580 8.39712 9.14277 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.011976 B = 0.007152 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.469680 B = 3914.123012 C = 6018.546607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.126 4.126 4 C 0.142 3.858 5 N -0.601 5.601 6 C -0.270 4.270 7 H 0.066 0.934 8 C -0.028 4.028 9 N -0.880 5.880 10 Si 0.922 3.078 11 H -0.294 1.294 12 H -0.293 1.293 13 H -0.283 1.283 14 C 0.213 3.787 15 C -0.161 4.161 16 C -0.084 4.084 17 C -0.241 4.241 18 C -0.106 4.106 19 C -0.009 4.009 20 C -0.166 4.166 21 C -0.034 4.034 22 C -0.168 4.168 23 C -0.009 4.009 24 C -0.106 4.106 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.039 0.961 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.031 0.969 34 H 0.248 0.752 35 H 0.022 0.978 36 H 0.074 0.926 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.138 0.862 40 H 0.154 0.846 41 H 0.156 0.844 42 H 0.147 0.853 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.721 -13.681 -10.978 17.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.166 4.166 4 C 0.016 3.984 5 N -0.321 5.321 6 C -0.399 4.399 7 H 0.084 0.916 8 C -0.225 4.225 9 N -0.525 5.525 10 Si 0.751 3.249 11 H -0.222 1.222 12 H -0.219 1.219 13 H -0.209 1.209 14 C 0.088 3.912 15 C -0.163 4.163 16 C -0.102 4.102 17 C -0.259 4.259 18 C -0.106 4.106 19 C -0.027 4.027 20 C -0.184 4.184 21 C -0.051 4.051 22 C -0.186 4.186 23 C -0.027 4.027 24 C -0.107 4.107 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.040 0.960 36 H 0.092 0.908 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.156 0.844 40 H 0.172 0.828 41 H 0.174 0.826 42 H 0.165 0.835 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.678 -13.539 -10.982 17.514 hybrid contribution 0.083 1.464 1.406 2.031 sum -1.595 -12.076 -9.576 15.494 Atomic orbital electron populations 1.21733 0.95067 1.02045 1.01518 1.21452 0.96447 0.95445 1.02072 1.22041 0.96989 0.97016 1.00548 1.21078 0.93164 0.84996 0.99133 1.44444 1.73888 1.11149 1.02641 1.19295 1.41220 0.92772 0.86583 0.91591 1.25139 0.99737 0.98516 0.99108 1.70438 1.32950 1.13191 1.35914 0.85957 0.79018 0.79212 0.80760 1.22188 1.21887 1.20950 1.19552 0.89471 0.98036 0.84147 1.21172 0.99026 0.95877 1.00220 1.22175 0.93133 1.00153 0.94788 1.21695 0.99436 0.98211 1.06570 1.19647 0.93481 0.96718 1.00762 1.21592 0.99648 0.91624 0.89797 1.21377 0.97784 0.96318 1.02946 1.21670 0.91004 0.99341 0.93111 1.21311 1.00264 0.97136 0.99914 1.21579 0.98110 0.91496 0.91534 1.19677 0.93631 0.96334 1.01043 0.92772 0.91311 0.93565 0.91147 0.92363 0.94193 0.93325 0.92990 0.95012 0.94241 0.96023 0.90799 0.85517 0.85242 0.84416 0.82803 0.82649 0.83483 0.86344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 9.91 71.98 0.71 -2.53 16 2 C -0.12 -3.03 5.93 30.59 0.18 -2.85 16 3 C -0.13 -4.41 5.53 30.59 0.17 -4.24 16 4 C 0.14 5.88 5.55 86.38 0.48 6.36 16 5 N -0.60 -30.50 2.52 -706.35 -1.78 -32.28 16 6 C -0.27 -15.22 9.60 84.03 0.81 -14.41 16 7 H 0.07 3.74 7.99 -2.91 -0.02 3.72 16 8 C -0.03 -1.60 4.76 84.86 0.40 -1.19 16 9 N -0.88 -50.49 7.55 21.65 0.16 -50.32 16 10 Si 0.92 45.34 29.69 68.60 2.04 47.38 16 11 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 12 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 13 H -0.28 -13.82 7.11 99.48 0.71 -13.12 16 14 C 0.21 10.72 5.00 85.63 0.43 11.15 16 15 C -0.16 -7.82 5.67 -19.54 -0.11 -7.93 16 16 C -0.08 -4.20 9.67 22.32 0.22 -3.98 16 17 C -0.24 -10.33 10.72 22.59 0.24 -10.08 16 18 C -0.11 -4.06 6.12 -19.95 -0.12 -4.18 16 19 C -0.01 -0.24 9.61 22.71 0.22 -0.02 16 20 C -0.17 -3.40 9.63 22.40 0.22 -3.18 16 21 C -0.03 -0.64 9.59 22.38 0.21 -0.42 16 22 C -0.17 -3.94 9.63 22.40 0.22 -3.72 16 23 C -0.01 -0.31 7.92 22.71 0.18 -0.13 16 24 C -0.11 -4.39 6.11 -19.95 -0.12 -4.51 16 25 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.05 1.71 8.03 -2.39 -0.02 1.69 16 32 H 0.05 2.00 4.43 -2.39 -0.01 1.99 16 33 H 0.03 1.36 7.95 -2.39 -0.02 1.34 16 34 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 35 H 0.02 1.01 7.53 -2.39 -0.02 0.99 16 36 H 0.07 4.19 5.33 -2.38 -0.01 4.18 16 37 H 0.13 6.93 5.77 -2.91 -0.02 6.92 16 38 H 0.13 4.86 8.06 -2.91 -0.02 4.83 16 39 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 40 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 41 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 42 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 43 H 0.12 3.90 5.48 -2.91 -0.02 3.89 16 Total: -1.00 -67.93 341.99 5.73 -62.20 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.98 Total: 18.91 kcal Atomic # 6 Polarization: -50.22 SS G_CDS: 4.33 Total: -45.89 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -1.62 Total: -82.60 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.04 Total: 47.38 kcal Total: -67.93 5.73 -62.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237189223.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.735 kcal (2) G-P(sol) polarization free energy of solvation -67.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds