Wall clock time and date at job start Tue Mar 31 2020 06:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47382 * 2 1 4 4 N 1.46906 * 109.47221 * 179.84642 * 3 2 1 5 5 C 1.46901 * 110.99855 * 298.48684 * 4 3 2 6 6 C 1.50698 * 109.47071 * 293.14187 * 5 4 3 7 7 H 1.07998 * 120.00416 * 354.95604 * 6 5 4 8 8 C 1.37879 * 119.99693 * 174.95817 * 6 5 4 9 9 N 1.31514 * 120.00246 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99897 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46995 * 89.99692 * 10 8 6 12 12 H 1.48499 * 109.46905 * 209.99676 * 10 8 6 13 13 H 1.48501 * 109.46673 * 329.99521 * 10 8 6 14 14 C 1.46897 * 111.00114 * 62.44425 * 4 3 2 15 15 C 1.50702 * 109.47160 * 66.04535 * 14 4 3 16 16 C 1.38372 * 125.78582 * 259.69003 * 15 14 4 17 17 C 1.38324 * 110.30932 * 179.88586 * 16 15 14 18 18 C 1.39489 * 108.41986 * 0.38205 * 17 16 15 19 19 C 1.39740 * 125.53343 * 179.72766 * 18 17 16 20 20 C 1.38572 * 127.52320 * 179.97438 * 19 18 17 21 21 C 1.38448 * 129.19671 * 0.02562 * 20 19 18 22 22 C 1.38505 * 130.46953 * 0.04478 * 21 20 19 23 23 C 1.38515 * 129.18850 * 359.96048 * 22 21 20 24 24 C 1.39440 * 125.78598 * 80.00180 * 15 14 4 25 25 H 1.09005 * 109.46815 * 300.00615 * 1 2 3 26 26 H 1.08996 * 109.47450 * 59.99932 * 1 2 3 27 27 H 1.08993 * 109.47455 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47553 * 239.99796 * 2 1 3 29 29 H 1.09003 * 109.47389 * 119.99691 * 2 1 3 30 30 H 1.08990 * 109.47494 * 59.84376 * 3 2 1 31 31 H 1.09002 * 109.47236 * 299.83978 * 3 2 1 32 32 H 1.08996 * 109.46526 * 53.14222 * 5 4 3 33 33 H 1.08994 * 109.46959 * 173.13808 * 5 4 3 34 34 H 0.97000 * 119.99971 * 180.02562 * 9 8 6 35 35 H 1.08998 * 109.47293 * 186.04501 * 14 4 3 36 36 H 1.08999 * 109.47073 * 306.04853 * 14 4 3 37 37 H 1.08003 * 124.84222 * 0.02562 * 16 15 14 38 38 H 1.08002 * 125.78515 * 180.15856 * 17 16 15 39 39 H 1.08000 * 116.24005 * 359.97438 * 19 18 17 40 40 H 1.07998 * 115.39887 * 180.02562 * 20 19 18 41 41 H 1.08004 * 114.76698 * 180.02562 * 21 20 19 42 42 H 1.07994 * 115.40869 * 179.97438 * 22 21 20 43 43 H 1.07999 * 116.24036 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4424 0.0037 5 6 4.0324 0.7893 1.2110 6 6 3.6880 1.6196 2.4206 7 1 3.2080 2.5792 2.2981 8 6 3.9860 1.1541 3.6838 9 7 4.5702 -0.0147 3.8331 10 14 3.5585 2.1830 5.1832 11 1 2.1914 1.8363 5.6480 12 1 4.5348 1.9069 6.2676 13 1 3.6096 3.6235 4.8260 14 6 4.0386 0.8069 -1.2102 15 6 3.6831 1.6444 -2.4116 16 6 2.6439 1.3975 -3.2912 17 6 2.6068 2.3688 -4.2754 18 6 3.6471 3.2691 -4.0454 19 6 3.9415 4.3875 -4.8298 20 6 4.9608 5.3069 -4.6400 21 6 5.9259 5.3510 -3.6483 22 6 6.1518 4.5046 -2.5754 23 6 5.4598 3.3654 -2.1985 24 6 4.3494 2.7960 -2.8287 25 1 -0.3633 0.5140 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6745 1.9571 0.8885 31 1 1.6790 1.9555 -0.8914 32 1 3.5868 -0.2004 1.3108 33 1 5.1153 0.6939 1.1320 34 1 4.7794 -0.3423 4.7218 35 1 5.1226 0.7235 -1.1334 36 1 3.6044 -0.1870 -1.3189 37 1 1.9581 0.5663 -3.2183 38 1 1.8955 2.4192 -5.0865 39 1 3.3004 4.5548 -5.6826 40 1 5.0093 6.1019 -5.3694 41 1 6.6144 6.1797 -3.7235 42 1 6.9857 4.7706 -1.9429 43 1 5.8199 2.8581 -1.3157 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237191092.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:56 Heat of formation + Delta-G solvation = 80.468284 kcal Electronic energy + Delta-G solvation = -21912.544035 eV Core-core repulsion = 18923.789544 eV Total energy + Delta-G solvation = -2988.754491 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 3.11 seconds Orbital eigenvalues (eV) -39.85604 -37.26627 -35.90360 -33.23157 -32.75054 -31.82320 -29.87060 -29.03958 -26.80807 -25.75184 -24.46932 -23.74763 -22.07362 -21.97884 -19.48772 -18.72449 -18.01184 -17.23846 -16.22031 -15.79247 -15.11068 -14.83124 -14.41545 -14.22978 -13.94358 -13.58157 -13.15358 -12.90749 -12.85543 -12.44794 -12.35568 -11.88672 -11.70534 -11.47254 -11.36920 -11.18582 -11.08804 -10.93210 -10.83406 -10.73182 -10.61974 -10.58659 -10.35741 -10.05454 -9.86480 -9.58852 -9.15019 -8.39222 -7.75742 -7.07963 -6.83973 -5.98506 -3.99103 -0.03928 0.49453 3.07416 3.33479 3.39781 3.44190 3.63877 3.73619 4.46853 4.63169 4.76148 4.92204 5.00520 5.15655 5.22337 5.23557 5.36745 5.50057 5.61719 5.63590 5.65308 5.72668 5.82026 5.96093 6.05931 6.07993 6.21004 6.23806 6.30183 6.45544 6.49801 6.51789 6.54640 6.61514 6.64900 6.75311 6.84184 7.03764 7.09713 7.15954 7.37510 7.39942 7.51347 7.87544 8.16926 8.30423 8.63880 9.09742 9.64928 11.11850 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.016135 B = 0.004893 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.988318 B = 5720.506652 C = 6862.184398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.163 4.163 3 C 0.070 3.930 4 N -0.530 5.530 5 C 0.187 3.813 6 C -0.501 4.501 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.894 3.106 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.105 3.895 15 C -0.126 4.126 16 C -0.100 4.100 17 C -0.198 4.198 18 C -0.091 4.091 19 C 0.004 3.996 20 C -0.174 4.174 21 C -0.029 4.029 22 C -0.168 4.168 23 C 0.031 3.969 24 C -0.070 4.070 25 H 0.052 0.948 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.003 0.997 33 H 0.022 0.978 34 H 0.260 0.740 35 H 0.068 0.932 36 H 0.035 0.965 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.120 0.880 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.557 6.831 -16.651 18.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.202 4.202 3 C -0.059 4.059 4 N -0.253 5.253 5 C 0.062 3.938 6 C -0.539 4.539 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.540 5.540 10 Si 0.722 3.278 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.198 1.198 14 C -0.022 4.022 15 C -0.126 4.126 16 C -0.119 4.119 17 C -0.216 4.216 18 C -0.091 4.091 19 C -0.014 4.014 20 C -0.192 4.192 21 C -0.047 4.047 22 C -0.187 4.187 23 C 0.014 3.986 24 C -0.071 4.071 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.021 0.979 33 H 0.040 0.960 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.137 0.863 38 H 0.142 0.858 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.138 0.862 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.287 7.215 -16.483 17.995 hybrid contribution -0.546 -0.389 0.934 1.150 sum -0.834 6.826 -15.549 17.002 Atomic orbital electron populations 1.21641 0.96641 1.00515 1.01162 1.22157 0.95427 1.00607 1.01959 1.21980 0.88400 0.94228 1.01247 1.62389 1.06625 1.54529 1.01712 1.19795 0.94869 0.93377 0.85729 1.21146 1.38567 1.04238 0.89996 0.92023 1.24960 0.95508 0.95096 0.98965 1.69957 1.42543 1.18701 1.22772 0.86565 0.78032 0.80712 0.82522 1.20804 1.21355 1.19845 1.20592 0.99319 0.94004 0.88307 1.20217 0.97892 0.97009 0.97520 1.21448 0.97292 0.98394 0.94737 1.21331 1.00573 0.97815 1.01856 1.19395 0.97963 0.95928 0.95805 1.21271 0.93736 0.90613 0.95821 1.20877 0.97147 1.00778 1.00444 1.21196 0.95117 0.96667 0.91696 1.21028 1.02239 0.96435 0.98950 1.21593 0.89859 0.91742 0.95449 1.19237 0.95913 0.96613 0.95306 0.92841 0.93538 0.93748 0.93091 0.90749 0.90594 0.92710 0.97946 0.95968 0.93051 0.91396 0.94683 0.86345 0.85797 0.86439 0.86657 0.86907 0.86177 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.91 37.15 0.37 -1.86 16 2 C -0.16 -3.03 5.28 -26.74 -0.14 -3.17 16 3 C 0.07 1.41 4.98 -3.82 -0.02 1.40 16 4 N -0.53 -11.45 4.69 -237.52 -1.11 -12.56 16 5 C 0.19 4.80 4.52 -4.98 -0.02 4.78 16 6 C -0.50 -13.95 8.40 -34.44 -0.29 -14.24 16 7 H 0.06 1.73 7.36 -52.49 -0.39 1.34 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 10 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.11 1.98 4.71 -4.98 -0.02 1.96 16 15 C -0.13 -2.16 4.74 -104.12 -0.49 -2.66 16 16 C -0.10 -1.57 9.90 -39.50 -0.39 -1.96 16 17 C -0.20 -2.83 10.72 -39.08 -0.42 -3.25 16 18 C -0.09 -1.32 6.12 -104.76 -0.64 -1.96 16 19 C 0.00 0.04 9.61 -38.90 -0.37 -0.33 16 20 C -0.17 -1.74 9.63 -39.38 -0.38 -2.12 16 21 C -0.03 -0.29 9.59 -39.41 -0.38 -0.67 16 22 C -0.17 -2.02 9.63 -39.38 -0.38 -2.40 16 23 C 0.03 0.47 9.46 -38.90 -0.37 0.10 16 24 C -0.07 -1.14 6.12 -104.76 -0.64 -1.78 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.90 6.34 -51.93 -0.33 0.57 16 29 H 0.07 1.61 6.28 -51.93 -0.33 1.29 16 30 H 0.08 1.68 6.98 -51.93 -0.36 1.32 16 31 H 0.05 1.05 6.65 -51.93 -0.35 0.71 16 32 H 0.00 0.08 6.01 -51.93 -0.31 -0.24 16 33 H 0.02 0.61 7.91 -51.93 -0.41 0.19 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.07 1.27 7.51 -51.93 -0.39 0.88 16 36 H 0.04 0.66 6.08 -51.93 -0.32 0.34 16 37 H 0.12 1.73 8.06 -52.48 -0.42 1.30 16 38 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.11 0.82 8.06 -52.48 -0.42 0.39 16 42 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 43 H 0.13 2.07 7.29 -52.49 -0.38 1.69 16 LS Contribution 347.11 15.07 5.23 5.23 Total: -1.00 -30.47 347.11 -11.36 -41.83 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.50 Total: 1.37 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: -4.69 Total: -26.70 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: -0.38 Total: -38.42 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.47 -11.36 -41.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237191092.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.298 kcal (2) G-P(sol) polarization free energy of solvation -30.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.11 seconds