Wall clock time and date at job start Tue Mar 31 2020 06:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47382 * 2 1 4 4 N 1.46906 * 109.47221 * 179.84642 * 3 2 1 5 5 C 1.46901 * 110.99855 * 298.48684 * 4 3 2 6 6 C 1.50698 * 109.47071 * 293.14187 * 5 4 3 7 7 H 1.07998 * 120.00416 * 354.95604 * 6 5 4 8 8 C 1.37879 * 119.99693 * 174.95817 * 6 5 4 9 9 N 1.31514 * 120.00246 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99897 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46995 * 89.99692 * 10 8 6 12 12 H 1.48499 * 109.46905 * 209.99676 * 10 8 6 13 13 H 1.48501 * 109.46673 * 329.99521 * 10 8 6 14 14 C 1.46897 * 111.00114 * 62.44425 * 4 3 2 15 15 C 1.50702 * 109.47160 * 66.04535 * 14 4 3 16 16 C 1.38372 * 125.78582 * 259.69003 * 15 14 4 17 17 C 1.38324 * 110.30932 * 179.88586 * 16 15 14 18 18 C 1.39489 * 108.41986 * 0.38205 * 17 16 15 19 19 C 1.39740 * 125.53343 * 179.72766 * 18 17 16 20 20 C 1.38572 * 127.52320 * 179.97438 * 19 18 17 21 21 C 1.38448 * 129.19671 * 0.02562 * 20 19 18 22 22 C 1.38505 * 130.46953 * 0.04478 * 21 20 19 23 23 C 1.38515 * 129.18850 * 359.96048 * 22 21 20 24 24 C 1.39440 * 125.78598 * 80.00180 * 15 14 4 25 25 H 1.09005 * 109.46815 * 300.00615 * 1 2 3 26 26 H 1.08996 * 109.47450 * 59.99932 * 1 2 3 27 27 H 1.08993 * 109.47455 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47553 * 239.99796 * 2 1 3 29 29 H 1.09003 * 109.47389 * 119.99691 * 2 1 3 30 30 H 1.08990 * 109.47494 * 59.84376 * 3 2 1 31 31 H 1.09002 * 109.47236 * 299.83978 * 3 2 1 32 32 H 1.08996 * 109.46526 * 53.14222 * 5 4 3 33 33 H 1.08994 * 109.46959 * 173.13808 * 5 4 3 34 34 H 0.97000 * 119.99971 * 180.02562 * 9 8 6 35 35 H 1.08998 * 109.47293 * 186.04501 * 14 4 3 36 36 H 1.08999 * 109.47073 * 306.04853 * 14 4 3 37 37 H 1.08003 * 124.84222 * 0.02562 * 16 15 14 38 38 H 1.08002 * 125.78515 * 180.15856 * 17 16 15 39 39 H 1.08000 * 116.24005 * 359.97438 * 19 18 17 40 40 H 1.07998 * 115.39887 * 180.02562 * 20 19 18 41 41 H 1.08004 * 114.76698 * 180.02562 * 21 20 19 42 42 H 1.07994 * 115.40869 * 179.97438 * 22 21 20 43 43 H 1.07999 * 116.24036 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4424 0.0037 5 6 4.0324 0.7893 1.2110 6 6 3.6880 1.6196 2.4206 7 1 3.2080 2.5792 2.2981 8 6 3.9860 1.1541 3.6838 9 7 4.5702 -0.0147 3.8331 10 14 3.5585 2.1830 5.1832 11 1 2.1914 1.8363 5.6480 12 1 4.5348 1.9069 6.2676 13 1 3.6096 3.6235 4.8260 14 6 4.0386 0.8069 -1.2102 15 6 3.6831 1.6444 -2.4116 16 6 2.6439 1.3975 -3.2912 17 6 2.6068 2.3688 -4.2754 18 6 3.6471 3.2691 -4.0454 19 6 3.9415 4.3875 -4.8298 20 6 4.9608 5.3069 -4.6400 21 6 5.9259 5.3510 -3.6483 22 6 6.1518 4.5046 -2.5754 23 6 5.4598 3.3654 -2.1985 24 6 4.3494 2.7960 -2.8287 25 1 -0.3633 0.5140 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6745 1.9571 0.8885 31 1 1.6790 1.9555 -0.8914 32 1 3.5868 -0.2004 1.3108 33 1 5.1153 0.6939 1.1320 34 1 4.7794 -0.3423 4.7218 35 1 5.1226 0.7235 -1.1334 36 1 3.6044 -0.1870 -1.3189 37 1 1.9581 0.5663 -3.2183 38 1 1.8955 2.4192 -5.0865 39 1 3.3004 4.5548 -5.6826 40 1 5.0093 6.1019 -5.3694 41 1 6.6144 6.1797 -3.7235 42 1 6.9857 4.7706 -1.9429 43 1 5.8199 2.8581 -1.3157 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237191092.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:53 Heat of formation + Delta-G solvation = 64.394556 kcal Electronic energy + Delta-G solvation = -21913.241044 eV Core-core repulsion = 18923.789544 eV Total energy + Delta-G solvation = -2989.451500 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.96954 -38.85257 -36.91528 -34.84690 -34.28989 -33.34847 -31.00806 -30.37912 -28.60153 -27.15478 -25.75353 -25.15378 -23.74299 -23.21409 -21.11301 -19.85646 -18.96613 -18.45861 -18.20920 -16.98029 -16.78753 -16.38745 -16.12018 -15.35477 -15.20741 -15.12520 -14.66827 -14.20576 -14.06757 -13.88184 -13.54172 -13.27668 -13.16956 -12.86067 -12.72327 -12.67532 -12.61324 -12.38142 -12.29908 -12.23839 -12.11058 -12.00448 -11.83044 -11.62204 -11.29958 -11.23064 -11.04111 -10.58733 -8.90407 -8.75727 -8.19078 -7.94279 -6.27235 -1.03584 -0.47640 1.39323 1.40365 1.52011 2.04941 2.40440 2.59511 2.68003 3.14152 3.57487 3.66757 3.99383 4.03488 4.10202 4.12282 4.16569 4.18230 4.24883 4.35373 4.39031 4.54381 4.58831 4.64739 4.76264 4.77591 4.89184 4.91134 5.05564 5.11164 5.16812 5.18450 5.25749 5.31782 5.41988 5.50482 5.54856 5.59785 5.66843 5.69017 5.72640 5.93555 6.08156 6.11070 6.31989 6.43444 6.71250 6.89784 7.42037 8.92619 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.016135 B = 0.004893 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.988318 B = 5720.506652 C = 6862.184398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.153 4.153 3 C 0.078 3.922 4 N -0.534 5.534 5 C 0.205 3.795 6 C -0.515 4.515 7 H 0.056 0.944 8 C 0.005 3.995 9 N -0.934 5.934 10 Si 0.964 3.036 11 H -0.274 1.274 12 H -0.281 1.281 13 H -0.266 1.266 14 C 0.117 3.883 15 C -0.169 4.169 16 C -0.115 4.115 17 C -0.205 4.205 18 C -0.104 4.104 19 C 0.008 3.992 20 C -0.162 4.162 21 C -0.021 4.021 22 C -0.167 4.167 23 C 0.005 3.995 24 C -0.092 4.092 25 H 0.048 0.952 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.036 0.964 30 H 0.052 0.948 31 H 0.069 0.931 32 H -0.022 1.022 33 H -0.006 1.006 34 H 0.263 0.737 35 H 0.053 0.947 36 H 0.028 0.972 37 H 0.119 0.881 38 H 0.149 0.851 39 H 0.153 0.847 40 H 0.161 0.839 41 H 0.156 0.844 42 H 0.138 0.862 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.994 10.263 -18.973 21.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.192 4.192 3 C -0.050 4.050 4 N -0.257 5.257 5 C 0.079 3.921 6 C -0.553 4.553 7 H 0.074 0.926 8 C -0.193 4.193 9 N -0.575 5.575 10 Si 0.789 3.211 11 H -0.199 1.199 12 H -0.206 1.206 13 H -0.191 1.191 14 C -0.010 4.010 15 C -0.169 4.169 16 C -0.133 4.133 17 C -0.223 4.223 18 C -0.104 4.104 19 C -0.009 4.009 20 C -0.180 4.180 21 C -0.039 4.039 22 C -0.185 4.185 23 C -0.013 4.013 24 C -0.092 4.092 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.087 0.913 32 H -0.005 1.005 33 H 0.012 0.988 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.046 0.954 37 H 0.137 0.863 38 H 0.167 0.833 39 H 0.171 0.829 40 H 0.178 0.822 41 H 0.173 0.827 42 H 0.156 0.844 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.733 10.649 -18.824 21.639 hybrid contribution -0.225 -1.224 1.477 1.931 sum -0.957 9.425 -17.347 19.765 Atomic orbital electron populations 1.21588 0.93832 1.01866 1.01940 1.22017 0.97847 0.99013 1.00353 1.21882 0.87410 0.95123 1.00593 1.62294 1.07702 1.54354 1.01345 1.19422 0.92983 0.92296 0.87439 1.21378 1.38615 1.04186 0.91135 0.92577 1.25834 0.95149 0.96240 1.02094 1.70087 1.43421 1.20335 1.23651 0.85465 0.78049 0.79136 0.78479 1.19936 1.20621 1.19090 1.20424 0.98194 0.94148 0.88227 1.19967 1.00449 0.98640 0.97886 1.21487 0.97219 0.99250 0.95373 1.21533 1.01251 0.97343 1.02173 1.19640 0.97919 0.97263 0.95552 1.21781 0.94239 0.89105 0.95821 1.21522 0.95310 1.00719 1.00414 1.21766 0.95376 0.96637 0.90109 1.21348 1.01978 0.95287 0.99856 1.21574 0.90820 0.93434 0.95478 1.19450 0.96504 0.96727 0.96557 0.93258 0.91486 0.92137 0.92428 0.94520 0.92901 0.91278 1.00453 0.98752 0.92805 0.92808 0.95379 0.86269 0.83289 0.82903 0.82184 0.82655 0.84400 0.87563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 9.91 71.98 0.71 -3.50 16 2 C -0.15 -6.04 5.28 30.59 0.16 -5.87 16 3 C 0.08 3.34 4.98 86.30 0.43 3.77 16 4 N -0.53 -24.98 4.69 -905.39 -4.24 -29.22 16 5 C 0.20 11.37 4.52 85.56 0.39 11.76 16 6 C -0.51 -30.15 8.40 25.60 0.22 -29.93 16 7 H 0.06 3.28 7.36 -2.91 -0.02 3.26 16 8 C 0.00 0.27 5.46 84.66 0.46 0.73 16 9 N -0.93 -57.37 13.29 21.45 0.28 -57.09 16 10 Si 0.96 45.44 29.54 68.60 2.03 47.46 16 11 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 14 C 0.12 4.86 4.71 85.56 0.40 5.26 16 15 C -0.17 -6.17 4.74 -19.54 -0.09 -6.26 16 16 C -0.11 -3.71 9.90 22.32 0.22 -3.49 16 17 C -0.21 -5.66 10.72 22.59 0.24 -5.42 16 18 C -0.10 -2.85 6.12 -19.96 -0.12 -2.97 16 19 C 0.01 0.15 9.61 22.71 0.22 0.37 16 20 C -0.16 -2.30 9.63 22.40 0.22 -2.09 16 21 C -0.02 -0.33 9.59 22.38 0.21 -0.12 16 22 C -0.17 -3.69 9.63 22.40 0.22 -3.47 16 23 C 0.01 0.16 9.46 22.71 0.21 0.37 16 24 C -0.09 -3.07 6.12 -19.95 -0.12 -3.19 16 25 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 26 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.06 2.17 6.34 -2.39 -0.02 2.15 16 29 H 0.04 1.71 6.28 -2.39 -0.01 1.69 16 30 H 0.05 2.47 6.98 -2.39 -0.02 2.45 16 31 H 0.07 2.76 6.65 -2.39 -0.02 2.74 16 32 H -0.02 -1.32 6.01 -2.39 -0.01 -1.34 16 33 H -0.01 -0.33 7.91 -2.39 -0.02 -0.35 16 34 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 35 H 0.05 2.28 7.51 -2.39 -0.02 2.26 16 36 H 0.03 1.17 6.08 -2.39 -0.01 1.15 16 37 H 0.12 3.61 8.06 -2.91 -0.02 3.59 16 38 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 39 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 40 H 0.16 1.00 8.06 -2.91 -0.02 0.97 16 41 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 42 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 43 H 0.11 3.70 7.29 -2.91 -0.02 3.68 16 Total: -1.00 -71.09 347.11 3.03 -68.06 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.98 Total: 14.84 kcal Atomic # 6 Polarization: -48.03 SS G_CDS: 3.98 Total: -44.05 kcal Atomic # 7 Polarization: -82.35 SS G_CDS: -3.96 Total: -86.31 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -71.09 3.03 -68.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237191092.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.454 kcal (2) G-P(sol) polarization free energy of solvation -71.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds