Wall clock time and date at job start Tue Mar 31 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46774 * 2 1 4 4 H 1.08998 * 109.47531 * 305.00069 * 3 2 1 5 5 N 1.46505 * 109.46984 * 65.00416 * 3 2 1 6 6 C 1.34775 * 119.99702 * 274.99502 * 5 3 2 7 7 O 1.21591 * 120.00289 * 4.41938 * 6 5 3 8 8 N 1.34774 * 120.00108 * 184.41689 * 6 5 3 9 9 C 1.46504 * 120.00201 * 185.00965 * 8 6 5 10 10 C 1.52995 * 109.47276 * 184.44069 * 9 8 6 11 11 C 1.50701 * 115.54992 * 304.96618 * 10 9 8 12 12 H 1.07998 * 120.00332 * 118.96851 * 11 10 9 13 13 C 1.37881 * 119.99729 * 298.68225 * 11 10 9 14 14 N 1.31510 * 119.99920 * 171.57574 * 13 11 10 15 15 Si 1.86799 * 120.00163 * 351.58710 * 13 11 10 16 16 H 1.48495 * 109.47305 * 93.55313 * 15 13 11 17 17 H 1.48500 * 109.47025 * 213.55470 * 15 13 11 18 18 H 1.48501 * 109.46842 * 333.55178 * 15 13 11 19 19 C 1.53003 * 117.51723 * 90.66376 * 10 9 8 20 20 C 1.53001 * 117.49993 * 159.29419 * 10 9 8 21 21 C 1.50698 * 109.47162 * 184.99929 * 3 2 1 22 22 O 1.21281 * 119.99969 * 240.00440 * 21 3 2 23 23 N 1.34773 * 119.99987 * 59.99894 * 21 3 2 24 24 C 1.46503 * 120.00163 * 180.02562 * 23 21 3 25 25 H 1.08997 * 109.46978 * 299.99560 * 1 2 3 26 26 H 1.08993 * 109.47206 * 60.00115 * 1 2 3 27 27 H 1.09009 * 109.46983 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47381 * 240.00108 * 2 1 3 29 29 H 1.09007 * 109.47177 * 119.99805 * 2 1 3 30 30 H 0.97000 * 120.00170 * 95.00087 * 5 3 2 31 31 H 0.96996 * 119.99964 * 5.00578 * 8 6 5 32 32 H 1.09000 * 109.46875 * 64.43979 * 9 8 6 33 33 H 1.08997 * 109.46835 * 304.44410 * 9 8 6 34 34 H 0.97003 * 120.00395 * 180.02562 * 14 13 11 35 35 H 1.09001 * 117.49671 * 214.97381 * 19 10 9 36 36 H 1.08995 * 117.50079 * 359.97438 * 19 10 9 37 37 H 1.08996 * 117.49651 * 359.97438 * 20 10 9 38 38 H 1.09001 * 117.50168 * 144.97667 * 20 10 9 39 39 H 0.96999 * 120.00104 * 359.97438 * 23 21 3 40 40 H 1.08997 * 109.46938 * 300.00277 * 24 23 21 41 41 H 1.08998 * 109.46998 * 60.00446 * 24 23 21 42 42 H 1.08998 * 109.47117 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6524 2.0975 1.2519 6 6 0.4351 2.6643 1.3670 7 8 -0.3709 2.5629 0.4623 8 7 0.1111 3.3436 2.4851 9 6 -1.2469 3.8657 2.6574 10 6 -1.3187 4.6841 3.9481 11 6 -0.8770 3.9670 5.1978 12 1 -0.0394 4.3412 5.7677 13 6 -1.5460 2.8365 5.6169 14 7 -1.0650 2.1170 6.6070 15 14 -3.1353 2.3268 4.7780 16 1 -2.8345 1.3544 3.6967 17 1 -4.0400 1.6967 5.7728 18 1 -3.7947 3.5241 4.1977 19 6 -1.0251 6.1826 3.8522 20 6 -2.4580 5.6969 4.0799 21 6 3.5418 1.4444 -0.1238 22 8 4.2215 1.9437 0.7478 23 7 4.1297 0.8913 -1.2031 24 6 5.5898 0.8926 -1.3232 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 2.2719 2.1232 1.9978 31 1 0.7770 3.4869 3.1756 32 1 -1.9509 3.0354 2.7140 33 1 -1.5021 4.5012 1.8095 34 1 -1.5354 1.3215 6.9017 35 1 -0.5123 6.6497 4.6930 36 1 -0.7802 6.5856 2.8695 37 1 -3.1560 5.7804 3.2470 38 1 -2.8882 5.8443 5.0705 39 1 3.5861 0.4916 -1.9000 40 1 5.9534 1.9201 -1.3229 41 1 6.0241 0.3532 -0.4815 42 1 5.8782 0.4050 -2.2544 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248030211.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:56 Heat of formation + Delta-G solvation = -42.533989 kcal Electronic energy + Delta-G solvation = -23107.947089 eV Core-core repulsion = 19703.009557 eV Total energy + Delta-G solvation = -3404.937533 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.45272 -39.14459 -37.13936 -35.23262 -34.91868 -33.39037 -32.18467 -31.75800 -28.56913 -26.76942 -25.68270 -24.71219 -22.10073 -21.57193 -20.65901 -20.14712 -19.27606 -18.36232 -17.25179 -16.41397 -16.25663 -15.82680 -15.33224 -15.19783 -14.82792 -14.27373 -14.17531 -13.77653 -13.50121 -13.16860 -13.02025 -12.88029 -12.59640 -12.41459 -12.18738 -12.12609 -11.90607 -11.42068 -11.04238 -10.82281 -10.66593 -10.52999 -10.23237 -10.01056 -9.73046 -9.47167 -9.42413 -9.14547 -8.85072 -8.77102 -8.46513 -8.07005 -6.17451 -4.18874 2.39719 2.71873 3.28784 3.33789 3.39852 3.46145 3.72464 4.40058 4.43166 4.67244 4.88786 4.93972 5.02887 5.05236 5.22098 5.23373 5.35415 5.50158 5.59778 5.73038 5.81899 5.99651 6.04112 6.08049 6.17082 6.25639 6.30891 6.49180 6.53853 6.65774 6.69616 6.73628 6.94201 7.11876 7.16965 7.28028 7.51646 7.69331 7.94052 8.42799 8.63339 8.85648 9.13932 9.46880 10.93329 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.021158 B = 0.004517 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.049470 B = 6197.444038 C = 6452.643155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.127 4.127 3 C 0.151 3.849 4 H 0.112 0.888 5 N -0.735 5.735 6 C 0.704 3.296 7 O -0.602 6.602 8 N -0.715 5.715 9 C 0.174 3.826 10 C -0.017 4.017 11 C -0.491 4.491 12 H 0.078 0.922 13 C 0.086 3.914 14 N -0.890 5.890 15 Si 0.867 3.133 16 H -0.278 1.278 17 H -0.293 1.293 18 H -0.250 1.250 19 C -0.180 4.180 20 C -0.188 4.188 21 C 0.510 3.490 22 O -0.529 6.529 23 N -0.734 5.734 24 C 0.088 3.912 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.406 0.594 31 H 0.407 0.593 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.265 0.735 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.404 0.596 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.215 -3.831 -16.164 18.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C 0.041 3.959 4 H 0.130 0.870 5 N -0.393 5.393 6 C 0.404 3.596 7 O -0.483 6.483 8 N -0.368 5.368 9 C 0.050 3.950 10 C -0.018 4.018 11 C -0.528 4.528 12 H 0.096 0.904 13 C -0.118 4.118 14 N -0.526 5.526 15 Si 0.695 3.305 16 H -0.204 1.204 17 H -0.220 1.220 18 H -0.174 1.174 19 C -0.217 4.217 20 C -0.226 4.226 21 C 0.295 3.705 22 O -0.405 6.405 23 N -0.386 5.386 24 C -0.056 4.056 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.242 0.758 31 H 0.243 0.757 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.238 0.762 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.947 -3.692 -16.190 18.410 hybrid contribution -0.473 -0.572 -0.002 0.742 sum 7.474 -4.264 -16.192 18.336 Atomic orbital electron populations 1.21820 0.93455 1.00475 1.04311 1.21940 0.98478 0.94020 1.02225 1.20569 0.89915 0.95517 0.89896 0.87004 1.44773 1.17135 1.61381 1.16034 1.15862 0.81628 0.78650 0.83478 1.90860 1.50002 1.66699 1.40704 1.45005 1.14772 1.57220 1.19805 1.20845 0.81496 0.96429 0.96228 1.19609 0.99663 0.87947 0.94607 1.20232 1.16644 1.09663 1.06221 0.90411 1.24896 0.97082 0.95406 0.94422 1.69905 1.38871 1.15879 1.27987 0.87019 0.84434 0.79797 0.79233 1.20398 1.22011 1.17412 1.22797 0.99311 0.99043 1.00587 1.23026 0.90913 1.07454 1.01201 1.20850 0.90594 0.77366 0.81655 1.90722 1.65368 1.44506 1.39896 1.45730 1.08293 1.61116 1.23496 1.21549 0.79644 1.02435 1.02014 0.91150 0.92001 0.93735 0.91360 0.91301 0.75760 0.75745 0.93138 0.93227 0.92494 0.89717 0.90876 0.91155 0.89350 0.76226 0.92135 0.92095 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.46 37.16 0.31 -1.72 16 2 C -0.13 -1.46 5.55 -26.73 -0.15 -1.61 16 3 C 0.15 1.94 2.66 -69.08 -0.18 1.76 16 4 H 0.11 1.43 7.64 -51.93 -0.40 1.03 16 5 N -0.74 -11.71 4.91 -59.81 -0.29 -12.00 16 6 C 0.70 13.45 7.28 -86.92 -0.63 12.82 16 7 O -0.60 -12.57 13.13 5.29 0.07 -12.50 16 8 N -0.71 -14.44 5.42 -65.23 -0.35 -14.79 16 9 C 0.17 3.78 5.15 -4.04 -0.02 3.76 16 10 C -0.02 -0.38 0.99 -155.66 -0.15 -0.53 16 11 C -0.49 -12.87 8.67 -34.44 -0.30 -13.16 16 12 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 13 C 0.09 2.36 5.46 -17.82 -0.10 2.26 16 14 N -0.89 -26.09 13.96 55.43 0.77 -25.31 16 15 Si 0.87 21.33 24.88 -169.99 -4.23 17.10 16 16 H -0.28 -6.96 7.00 56.52 0.40 -6.56 16 17 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 18 H -0.25 -5.82 5.91 56.52 0.33 -5.49 16 19 C -0.18 -3.54 9.93 -26.73 -0.27 -3.81 16 20 C -0.19 -3.86 8.35 -26.73 -0.22 -4.08 16 21 C 0.51 6.24 7.22 -10.99 -0.08 6.16 16 22 O -0.53 -8.43 15.84 5.56 0.09 -8.35 16 23 N -0.73 -6.01 5.57 -67.08 -0.37 -6.38 16 24 C 0.09 0.61 10.70 59.85 0.64 1.25 16 25 H 0.07 1.28 5.54 -51.93 -0.29 0.99 16 26 H 0.06 0.88 7.80 -51.93 -0.40 0.48 16 27 H 0.04 0.56 8.14 -51.92 -0.42 0.14 16 28 H 0.07 0.55 7.43 -51.93 -0.39 0.16 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.41 6.43 7.82 -40.82 -0.32 6.11 16 31 H 0.41 8.10 7.99 -40.82 -0.33 7.77 16 32 H 0.05 1.19 4.81 -51.93 -0.25 0.94 16 33 H 0.05 1.03 8.06 -51.93 -0.42 0.61 16 34 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 39 H 0.40 2.12 8.19 -40.82 -0.33 1.78 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 339.08 15.07 5.11 5.11 Total: -1.00 -32.32 339.08 -6.92 -39.23 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -6.56 Total: 14.81 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -1.15 Total: 3.08 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: -0.25 Total: -58.49 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: 0.16 Total: -20.85 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.23 Total: 17.10 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.32 -6.92 -39.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248030211.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.301 kcal (2) G-P(sol) polarization free energy of solvation -32.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds