Wall clock time and date at job start Tue Mar 31 2020 06:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42898 * 109.47325 * 2 1 4 4 C 1.42895 * 114.00197 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47428 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47290 * 180.02562 * 5 4 3 7 7 N 1.46502 * 109.46959 * 179.97438 * 6 5 4 8 8 N 1.40589 * 127.38199 * 272.63851 * 7 6 5 9 9 N 1.28909 * 106.81049 * 180.02562 * 8 7 6 10 10 N 1.28419 * 110.31981 * 359.72753 * 9 8 7 11 11 C 1.31466 * 110.51204 * 0.45543 * 10 9 8 12 12 N 1.38380 * 126.44406 * 179.81505 * 11 10 9 13 13 C 1.46895 * 111.00207 * 253.20409 * 12 11 10 14 14 C 1.52997 * 109.47053 * 61.01281 * 13 12 11 15 15 C 1.46897 * 110.99727 * 17.15842 * 12 11 10 16 16 C 1.50707 * 109.47072 * 165.35765 * 15 12 11 17 17 H 1.08000 * 119.99712 * 355.24240 * 16 15 12 18 18 C 1.37878 * 119.99827 * 175.24553 * 16 15 12 19 19 N 1.31511 * 120.00011 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99592 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47448 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46828 * 120.00537 * 20 18 16 23 23 H 1.48503 * 109.47194 * 239.99612 * 20 18 16 24 24 H 1.09001 * 109.47083 * 299.99857 * 1 2 3 25 25 H 1.09000 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.09001 * 109.47547 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47083 * 240.00143 * 2 1 3 28 28 H 1.09000 * 109.47261 * 120.00187 * 2 1 3 29 29 H 1.09004 * 109.46876 * 60.00164 * 4 3 2 30 30 H 1.09001 * 109.47439 * 300.00511 * 4 3 2 31 31 H 1.08995 * 109.47254 * 59.99784 * 5 4 3 32 32 H 1.09008 * 109.46700 * 300.00205 * 5 4 3 33 33 H 1.08999 * 109.46997 * 60.00129 * 6 5 4 34 34 H 1.08994 * 109.47017 * 299.99619 * 6 5 4 35 35 H 1.09002 * 109.47119 * 181.01268 * 13 12 11 36 36 H 1.08998 * 109.47257 * 301.01245 * 13 12 11 37 37 H 1.08999 * 109.47631 * 66.87310 * 14 13 12 38 38 H 1.09006 * 109.47279 * 186.87591 * 14 13 12 39 39 H 1.09000 * 109.47036 * 306.87059 * 14 13 12 40 40 H 1.09005 * 109.46950 * 45.35971 * 15 12 11 41 41 H 1.08997 * 109.47102 * 285.35731 * 15 12 11 42 42 H 0.96999 * 120.00255 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8254 2.9383 0.0012 6 6 5.3506 3.0591 0.0012 7 7 5.7284 4.4746 0.0011 8 7 5.8988 5.3125 -1.1149 9 7 6.2306 6.4731 -0.6625 10 7 6.2811 6.4538 0.6206 11 6 5.9886 5.2555 1.0752 12 7 5.9485 4.8670 2.4027 13 6 7.1009 4.0203 2.7385 14 6 8.3939 4.8080 2.5183 15 6 5.8768 6.0349 3.2909 16 6 5.4767 5.5902 4.6742 17 1 5.2194 4.5571 4.8559 18 6 5.4390 6.5021 5.7076 19 7 5.7527 7.7600 5.4863 20 14 4.9438 5.9507 7.4222 21 1 4.6430 4.4966 7.4070 22 1 6.0574 6.2156 8.3682 23 1 3.7378 6.7017 7.8547 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8339 0.9764 -0.8892 30 1 3.8333 0.9766 0.8908 31 1 3.4223 3.4216 0.8911 32 1 3.4229 3.4221 -0.8889 33 1 5.7533 2.5759 -0.8891 34 1 5.7534 2.5753 0.8909 35 1 7.0352 3.7145 3.7827 36 1 7.1007 3.1366 2.1005 37 1 8.4510 5.6222 3.2407 38 1 9.2497 4.1456 2.6490 39 1 8.4024 5.2173 1.5081 40 1 5.1375 6.7382 2.9074 41 1 6.8520 6.5198 3.3331 42 1 5.7259 8.4017 6.2131 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262211706.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:16 Heat of formation + Delta-G solvation = 72.290390 kcal Electronic energy + Delta-G solvation = -22780.744115 eV Core-core repulsion = 19413.078492 eV Total energy + Delta-G solvation = -3367.665623 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.175 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.48528 -38.39851 -37.73137 -35.69562 -32.83002 -32.46025 -31.29401 -30.73861 -29.50239 -27.06309 -26.28861 -23.79350 -23.03863 -22.69953 -22.39802 -21.51110 -20.09000 -17.37411 -16.61279 -16.59619 -16.35613 -16.02548 -15.96820 -15.01121 -14.84332 -14.47706 -14.11209 -13.76781 -13.51494 -13.18917 -13.01972 -12.52315 -12.44961 -12.18532 -12.10436 -11.86538 -11.68624 -11.61243 -11.32602 -11.22293 -11.05852 -10.87610 -10.80878 -10.54280 -10.37796 -10.30498 -10.06825 -9.82649 -9.78003 -9.41730 -8.57262 -7.95798 -6.14127 -4.19323 1.45943 2.10024 2.83347 3.24330 3.32291 3.35019 3.42061 4.10847 4.39581 4.42574 4.75914 4.77703 4.84133 4.90235 4.97754 5.07585 5.11109 5.16432 5.17030 5.21526 5.42663 5.45392 5.51592 5.61549 5.65392 5.68478 5.84345 5.87172 5.95090 6.04746 6.05750 6.27246 6.41322 6.57111 6.96780 7.00303 7.17906 7.49903 7.62879 7.90242 8.19988 8.84835 9.05577 9.45099 10.95840 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.011631 B = 0.004964 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.800374 B = 5638.946274 C = 7307.297121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.387 6.387 4 C 0.071 3.929 5 C -0.136 4.136 6 C 0.137 3.863 7 N -0.393 5.393 8 N -0.109 5.109 9 N -0.039 5.039 10 N -0.354 5.354 11 C 0.444 3.556 12 N -0.455 5.455 13 C 0.064 3.936 14 C -0.186 4.186 15 C 0.201 3.799 16 C -0.521 4.521 17 H 0.067 0.933 18 C 0.062 3.938 19 N -0.887 5.887 20 Si 0.901 3.099 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.045 0.955 40 H 0.040 0.960 41 H 0.030 0.970 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.381 -16.691 -8.980 19.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.306 6.306 4 C -0.007 4.007 5 C -0.175 4.175 6 C 0.014 3.986 7 N -0.193 5.193 8 N -0.096 5.096 9 N -0.035 5.035 10 N -0.212 5.212 11 C 0.079 3.921 12 N -0.181 5.181 13 C -0.063 4.063 14 C -0.245 4.245 15 C 0.078 3.922 16 C -0.560 4.560 17 H 0.085 0.915 18 C -0.141 4.141 19 N -0.525 5.525 20 Si 0.728 3.272 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.048 0.952 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.712 -15.701 -9.802 18.707 hybrid contribution 0.196 -0.813 1.387 1.620 sum -2.515 -16.514 -8.415 18.704 Atomic orbital electron populations 1.21749 0.93731 1.02169 1.03335 1.22459 0.95689 0.83712 1.00030 1.87908 1.20801 1.26481 1.95427 1.22278 0.81737 0.96195 1.00454 1.21838 0.93833 0.96374 1.05424 1.21670 0.95935 0.76013 1.04982 1.51338 1.51285 1.11829 1.04819 1.82401 1.23525 0.96897 1.06805 1.77842 1.09097 1.12797 1.03763 1.75111 1.25070 1.18504 1.02503 1.23748 0.91765 0.86436 0.90125 1.59441 1.38991 1.24771 0.94868 1.22191 0.86405 0.94038 1.03621 1.22417 0.97859 1.01960 1.02264 1.20005 0.98827 0.84016 0.89383 1.21045 1.46933 0.96064 0.91967 0.91527 1.24953 0.95164 0.94771 0.99227 1.69981 1.47570 1.02236 1.32688 0.86405 0.78233 0.78816 0.83744 1.19617 1.20939 1.20887 0.91648 0.91872 0.91146 0.93492 0.93256 0.93086 0.92653 0.89259 0.90135 0.88313 0.87679 0.87336 0.92364 0.90204 0.92235 0.93583 0.94188 0.95245 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.15 0.38 -0.79 16 2 C 0.06 0.50 6.66 37.15 0.25 0.74 16 3 O -0.39 -4.55 10.34 -35.23 -0.36 -4.91 16 4 C 0.07 0.69 5.94 37.16 0.22 0.91 16 5 C -0.14 -1.62 5.91 -26.73 -0.16 -1.78 16 6 C 0.14 1.60 6.46 -4.04 -0.03 1.58 16 7 N -0.39 -6.59 3.69 -61.86 -0.23 -6.82 16 8 N -0.11 -2.03 13.93 60.35 0.84 -1.19 16 9 N -0.04 -0.81 13.38 60.35 0.81 -0.01 16 10 N -0.35 -7.87 11.10 30.10 0.33 -7.54 16 11 C 0.44 8.82 5.55 -320.41 -1.78 7.04 16 12 N -0.46 -9.15 4.69 -176.23 -0.83 -9.98 16 13 C 0.06 1.06 5.77 -3.83 -0.02 1.04 16 14 C -0.19 -3.11 9.28 37.16 0.34 -2.76 16 15 C 0.20 4.98 4.05 -4.97 -0.02 4.96 16 16 C -0.52 -13.56 8.46 -34.44 -0.29 -13.85 16 17 H 0.07 1.67 7.60 -52.49 -0.40 1.27 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -25.39 13.29 55.43 0.74 -24.66 16 20 Si 0.90 20.49 29.54 -169.99 -5.02 15.46 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.08 1.04 8.14 -51.92 -0.42 0.61 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.11 1.08 6.19 -51.93 -0.32 0.76 16 35 H 0.11 1.83 7.22 -51.93 -0.37 1.46 16 36 H 0.06 0.77 6.28 -51.93 -0.33 0.44 16 37 H 0.08 1.53 6.60 -51.93 -0.34 1.19 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.82 6.87 -51.93 -0.36 0.47 16 40 H 0.04 1.12 7.84 -51.93 -0.41 0.72 16 41 H 0.03 0.78 6.06 -51.93 -0.31 0.47 16 42 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 347.61 15.07 5.24 5.24 Total: -1.00 -31.10 347.61 -6.31 -37.41 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -6.63 Total: -1.66 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -1.20 Total: -1.35 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: 1.66 Total: -50.19 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -0.36 Total: -4.91 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.10 -6.31 -37.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262211706.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.702 kcal (2) G-P(sol) polarization free energy of solvation -31.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds