Wall clock time and date at job start Tue Mar 31 2020 06:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.46797 * 2 1 4 4 C 1.39380 * 119.50710 * 266.13412 * 3 2 1 5 5 C 1.36087 * 120.98573 * 180.28413 * 4 3 2 6 6 C 1.40543 * 119.65376 * 359.70901 * 5 4 3 7 7 C 1.40538 * 121.27713 * 180.02562 * 6 5 4 8 8 C 1.36089 * 119.65326 * 179.97438 * 7 6 5 9 9 C 1.39375 * 120.98835 * 0.02582 * 8 7 6 10 10 C 1.36098 * 120.99078 * 359.93080 * 9 8 7 11 11 C 1.40541 * 119.65135 * 0.08297 * 10 9 8 12 12 C 1.36094 * 119.50477 * 85.84911 * 3 2 1 13 13 C 1.50707 * 120.16998 * 0.02562 * 12 3 2 14 14 N 1.46900 * 109.47100 * 83.33734 * 13 12 3 15 15 C 1.46897 * 111.00475 * 75.41671 * 14 13 12 16 16 C 1.46904 * 110.99664 * 199.37358 * 14 13 12 17 17 C 1.50701 * 109.47023 * 169.99679 * 16 14 13 18 18 H 1.07999 * 119.99720 * 359.97438 * 17 16 14 19 19 C 1.37872 * 119.99956 * 179.97438 * 17 16 14 20 20 N 1.31514 * 120.00139 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00057 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46581 * 60.00055 * 21 19 17 23 23 H 1.48492 * 109.47274 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46930 * 300.00308 * 21 19 17 25 25 H 1.08999 * 109.47079 * 65.20709 * 1 2 3 26 26 H 1.09006 * 109.47058 * 185.20708 * 1 2 3 27 27 H 1.08999 * 109.47342 * 305.20068 * 1 2 3 28 28 H 1.08992 * 109.46914 * 240.00194 * 2 1 3 29 29 H 1.09003 * 109.47141 * 119.99906 * 2 1 3 30 30 H 1.07998 * 119.50345 * 359.97411 * 4 3 2 31 31 H 1.08004 * 120.17242 * 179.69080 * 5 4 3 32 32 H 1.08006 * 120.17392 * 359.97438 * 7 6 5 33 33 H 1.08008 * 119.50919 * 179.97438 * 8 7 6 34 34 H 1.08002 * 119.50924 * 179.97438 * 9 8 7 35 35 H 1.07995 * 120.17575 * 180.02562 * 10 9 8 36 36 H 1.09004 * 109.46758 * 203.33161 * 13 12 3 37 37 H 1.09002 * 109.47231 * 323.33225 * 13 12 3 38 38 H 1.08997 * 109.46882 * 55.84495 * 15 14 13 39 39 H 1.08996 * 109.47279 * 175.84356 * 15 14 13 40 40 H 1.09008 * 109.46879 * 295.84715 * 15 14 13 41 41 H 1.08996 * 109.46741 * 289.99206 * 16 14 13 42 42 H 1.09000 * 109.47294 * 49.99692 * 16 14 13 43 43 H 0.96999 * 119.99755 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3382 2.0408 -1.2103 5 6 2.7993 3.3207 -1.2449 6 6 2.9649 4.0329 -0.0446 7 6 3.4380 5.3562 -0.0408 8 6 3.5854 6.0151 1.1408 9 6 3.2743 5.3971 2.3507 10 6 2.8129 4.1172 2.3856 11 6 2.6480 3.4046 1.1855 12 6 2.1749 2.0813 1.1813 13 6 1.8330 1.3951 2.4788 14 7 2.9751 0.5826 2.9187 15 6 4.0408 1.4284 3.4726 16 6 2.5534 -0.4362 3.8895 17 6 3.6869 -1.3996 4.1309 18 1 4.6263 -1.2684 3.6145 19 6 3.5245 -2.4484 5.0110 20 7 2.3804 -2.6084 5.6394 21 14 4.9293 -3.6430 5.3097 22 1 6.1018 -2.9046 5.8438 23 1 4.5031 -4.6728 6.2910 24 1 5.2994 -4.3015 4.0311 25 1 -0.3633 0.4309 -0.9329 26 1 -0.3633 -1.0235 0.0933 27 1 -0.3634 0.5924 0.8397 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 2.2121 1.4956 -2.1339 31 1 3.0370 3.7867 -2.1898 32 1 3.6835 5.8477 -0.9707 33 1 3.9496 7.0319 1.1412 34 1 3.4007 5.9422 3.2745 35 1 2.5755 3.6513 3.3305 36 1 1.6066 2.1444 3.2374 37 1 0.9649 0.7525 2.3323 38 1 3.6375 2.0379 4.2813 39 1 4.8420 0.7978 3.8577 40 1 4.4334 2.0773 2.6897 41 1 2.2811 0.0469 4.8279 42 1 1.6932 -0.9783 3.4968 43 1 2.2664 -3.3461 6.2589 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307515113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:34 Heat of formation + Delta-G solvation = 36.498930 kcal Electronic energy + Delta-G solvation = -22254.351716 eV Core-core repulsion = 19263.690570 eV Total energy + Delta-G solvation = -2990.661145 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.49870 -37.35013 -36.22027 -33.45540 -32.74771 -31.94992 -29.75920 -28.85436 -27.21815 -26.44080 -24.20111 -23.49267 -23.01001 -21.22920 -20.91828 -19.67381 -17.11802 -16.99411 -16.26039 -15.81314 -14.99105 -14.68002 -14.34131 -14.13613 -13.88518 -13.67458 -13.42691 -13.24512 -13.04888 -12.86986 -12.61728 -12.20185 -11.96084 -11.74385 -11.43999 -11.28867 -11.12021 -10.90562 -10.78922 -10.69722 -10.65219 -10.53371 -10.37239 -10.31953 -9.82302 -9.57861 -9.21903 -8.43620 -8.31067 -7.57333 -7.22654 -6.02797 -4.04007 0.72735 1.20802 2.24267 3.16030 3.33730 3.37696 3.40982 4.25722 4.44173 4.72991 4.91397 5.00991 5.03864 5.16744 5.18798 5.31501 5.34666 5.40485 5.48348 5.53161 5.62958 5.72471 5.79195 5.81546 5.98324 6.10646 6.11728 6.20818 6.24142 6.29487 6.34964 6.38685 6.42858 6.50114 6.62945 6.66281 6.75665 6.79016 7.01669 7.06967 7.23368 7.27364 7.33761 7.79725 8.07120 8.19603 8.53824 9.03539 9.60221 11.07891 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.018590 B = 0.004813 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.837476 B = 5816.661178 C = 6660.573151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 C -0.060 4.060 4 C -0.105 4.105 5 C -0.121 4.121 6 C -0.056 4.056 7 C -0.110 4.110 8 C -0.122 4.122 9 C -0.127 4.127 10 C -0.099 4.099 11 C -0.040 4.040 12 C -0.048 4.048 13 C 0.084 3.916 14 N -0.530 5.530 15 C 0.037 3.963 16 C 0.193 3.807 17 C -0.506 4.506 18 H 0.063 0.937 19 C 0.056 3.944 20 N -0.899 5.899 21 Si 0.897 3.103 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.276 1.276 25 H 0.048 0.952 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.128 0.872 36 H 0.034 0.966 37 H 0.082 0.918 38 H 0.009 0.991 39 H 0.075 0.925 40 H 0.047 0.953 41 H -0.010 1.010 42 H 0.030 0.970 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.437 13.753 -11.590 18.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.132 4.132 3 C -0.061 4.061 4 C -0.123 4.123 5 C -0.139 4.139 6 C -0.056 4.056 7 C -0.128 4.128 8 C -0.140 4.140 9 C -0.145 4.145 10 C -0.117 4.117 11 C -0.040 4.040 12 C -0.049 4.049 13 C -0.044 4.044 14 N -0.254 5.254 15 C -0.112 4.112 16 C 0.068 3.932 17 C -0.545 4.545 18 H 0.081 0.919 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.725 3.275 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.202 1.202 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.118 0.882 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.146 0.854 36 H 0.052 0.948 37 H 0.100 0.900 38 H 0.028 0.972 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.008 0.992 42 H 0.048 0.952 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.348 13.366 -11.843 17.908 hybrid contribution 0.474 -0.198 0.933 1.065 sum -0.874 13.168 -10.909 17.122 Atomic orbital electron populations 1.21735 0.95329 1.01725 1.01317 1.20685 0.95492 0.92664 1.04368 1.19436 0.98336 0.96250 0.92044 1.20764 0.99106 0.94930 0.97476 1.20874 1.01306 0.95010 0.96686 1.18030 1.00297 0.94266 0.93002 1.20938 1.00029 0.93727 0.98149 1.20762 1.00836 0.99814 0.92629 1.20789 1.00474 0.95353 0.97857 1.21223 0.98423 0.94373 0.97682 1.17978 0.99381 0.93875 0.92788 1.19647 0.97615 0.92116 0.95502 1.21131 0.95409 0.95751 0.92116 1.62085 1.07762 1.13299 1.42261 1.22308 0.96231 0.96108 0.96511 1.19771 0.96730 0.88650 0.88047 1.21112 0.99306 1.10164 1.23923 0.91910 1.24966 0.95850 0.97787 0.95873 1.69947 1.23978 1.31413 1.28510 0.86579 0.82315 0.80650 0.77978 1.20319 1.21380 1.20163 0.93316 0.92359 0.92671 0.91658 0.88203 0.86346 0.86135 0.86117 0.86512 0.86382 0.85447 0.94849 0.89996 0.97230 0.90674 0.93468 0.99193 0.95171 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.66 37.16 0.36 -1.54 16 2 C -0.09 -1.43 5.36 -27.88 -0.15 -1.58 16 3 C -0.06 -0.93 5.10 -104.97 -0.54 -1.46 16 4 C -0.10 -1.41 9.57 -39.93 -0.38 -1.79 16 5 C -0.12 -1.56 9.77 -39.49 -0.39 -1.94 16 6 C -0.06 -0.80 5.74 -106.83 -0.61 -1.41 16 7 C -0.11 -1.34 9.77 -39.49 -0.39 -1.72 16 8 C -0.12 -1.41 9.95 -39.93 -0.40 -1.81 16 9 C -0.13 -1.59 9.95 -39.93 -0.40 -1.99 16 10 C -0.10 -1.46 7.92 -39.48 -0.31 -1.77 16 11 C -0.04 -0.63 5.19 -106.84 -0.55 -1.18 16 12 C -0.05 -0.80 4.98 -104.52 -0.52 -1.32 16 13 C 0.08 1.53 4.03 -4.97 -0.02 1.51 16 14 N -0.53 -11.33 4.17 -245.82 -1.03 -12.35 16 15 C 0.04 0.74 8.19 60.06 0.49 1.23 16 16 C 0.19 4.92 4.70 -4.97 -0.02 4.90 16 17 C -0.51 -14.05 8.40 -34.44 -0.29 -14.34 16 18 H 0.06 1.74 7.16 -52.49 -0.38 1.36 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 21 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.76 6.94 -51.93 -0.36 0.40 16 28 H 0.06 0.89 8.05 -51.93 -0.42 0.47 16 29 H 0.10 1.82 6.56 -51.93 -0.34 1.48 16 30 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 31 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 32 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 33 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 34 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.13 1.90 5.09 -52.49 -0.27 1.64 16 36 H 0.03 0.59 5.88 -51.93 -0.31 0.29 16 37 H 0.08 1.49 5.31 -51.93 -0.28 1.22 16 38 H 0.01 0.18 7.32 -51.93 -0.38 -0.20 16 39 H 0.07 1.62 6.68 -51.93 -0.35 1.27 16 40 H 0.05 0.88 6.50 -51.92 -0.34 0.54 16 41 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 42 H 0.03 0.81 7.83 -51.93 -0.41 0.41 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 LS Contribution 338.37 15.07 5.10 5.10 Total: -1.00 -29.76 338.37 -10.75 -40.51 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -6.33 Total: 0.61 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -4.21 Total: -24.74 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: -0.29 Total: -38.03 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.76 -10.75 -40.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307515113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.013 kcal (2) G-P(sol) polarization free energy of solvation -29.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds