Wall clock time and date at job start Tue Mar 31 2020 06:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47185 * 2 1 4 4 C 1.50699 * 109.47191 * 120.00479 * 2 1 3 5 5 H 1.07994 * 120.00491 * 114.23619 * 4 2 1 6 6 C 1.37884 * 119.99510 * 294.23186 * 4 2 1 7 7 N 1.31518 * 119.99849 * 209.34325 * 6 4 2 8 8 Si 1.86792 * 120.00175 * 29.35002 * 6 4 2 9 9 H 1.48501 * 109.47464 * 179.97438 * 8 6 4 10 10 H 1.48502 * 109.47210 * 299.99840 * 8 6 4 11 11 H 1.48504 * 109.47262 * 59.99611 * 8 6 4 12 12 C 1.53004 * 109.46825 * 239.99967 * 2 1 3 13 13 N 1.46504 * 109.46770 * 60.00137 * 12 2 1 14 14 C 1.34776 * 119.99733 * 179.97438 * 13 12 2 15 15 O 1.21589 * 119.99746 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00353 * 179.97438 * 14 13 12 17 17 C 1.46497 * 120.00478 * 179.97438 * 16 14 13 18 18 C 1.52991 * 109.47260 * 180.02562 * 17 16 14 19 19 H 1.09008 * 110.85931 * 305.70568 * 18 17 16 20 20 C 1.54475 * 110.97141 * 181.91520 * 18 17 16 21 21 N 1.46771 * 105.47487 * 216.46610 * 20 18 17 22 22 C 1.34419 * 111.30001 * 17.01341 * 21 20 18 23 23 O 1.21280 * 124.94242 * 179.61808 * 22 21 20 24 24 C 1.51347 * 110.12847 * 359.56090 * 22 21 20 25 25 H 1.09008 * 109.46707 * 295.40898 * 1 2 3 26 26 H 1.08995 * 109.47150 * 55.40180 * 1 2 3 27 27 H 1.08998 * 109.47282 * 175.40926 * 1 2 3 28 28 H 1.08998 * 109.46902 * 185.31585 * 3 2 1 29 29 H 1.08994 * 109.47096 * 305.31196 * 3 2 1 30 30 H 1.08992 * 109.46772 * 65.31669 * 3 2 1 31 31 H 0.97006 * 119.99913 * 354.99730 * 7 6 4 32 32 H 1.08997 * 109.46899 * 179.97438 * 12 2 1 33 33 H 1.08997 * 109.47094 * 300.00462 * 12 2 1 34 34 H 0.96999 * 120.00080 * 0.02562 * 13 12 2 35 35 H 0.96999 * 119.99460 * 0.02562 * 16 14 13 36 36 H 1.08997 * 109.47091 * 300.00741 * 17 16 14 37 37 H 1.09003 * 109.46711 * 60.00559 * 17 16 14 38 38 H 1.09000 * 110.24595 * 335.45991 * 20 18 17 39 39 H 1.08999 * 110.25146 * 97.37854 * 20 18 17 40 40 H 0.97002 * 124.34866 * 196.99317 * 21 20 18 41 41 H 1.08995 * 110.51895 * 225.11739 * 24 22 21 42 42 H 1.09003 * 110.47403 * 102.46055 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5743 -1.6396 1.1340 6 6 1.8001 -0.1742 2.4792 7 7 2.6478 -0.3986 3.4593 8 14 0.2812 0.8709 2.7791 9 1 0.2632 1.3240 4.1932 10 1 0.3083 2.0529 1.8805 11 1 -0.9359 0.0664 2.5021 12 6 2.0400 -0.7213 -1.2493 13 7 1.5516 -0.0306 -2.4454 14 6 1.8775 -0.4907 -3.6695 15 8 2.5773 -1.4788 -3.7811 16 7 1.4278 0.1443 -4.7700 17 6 1.7826 -0.3555 -6.1006 18 6 1.1492 0.5398 -7.1673 19 1 0.0738 0.6271 -7.0122 20 6 1.4623 0.0155 -8.5862 21 7 1.6460 1.2131 -9.4146 22 6 1.8546 2.3036 -8.6568 23 8 2.0423 3.4222 -9.0861 24 6 1.8197 1.9329 -7.1899 25 1 -0.3633 0.4410 0.9283 26 1 -0.3633 0.5835 -0.8459 27 1 -0.3634 -1.0243 -0.0822 28 1 3.1259 1.4440 -0.0952 29 1 1.6012 1.9831 -0.8385 30 1 1.7566 1.9281 0.9337 31 1 3.3972 -0.9997 3.3243 32 1 3.1299 -0.7209 -1.2495 33 1 1.6765 -1.7489 -1.2493 34 1 0.9942 0.7583 -2.3564 35 1 0.8699 0.9328 -4.6809 36 1 2.8665 -0.3458 -6.2153 37 1 1.4142 -1.3749 -6.2159 38 1 2.3756 -0.5793 -8.5755 39 1 0.6295 -0.5796 -8.9608 40 1 1.6204 1.2171 -10.3842 41 1 1.2240 2.6523 -6.6281 42 1 2.8309 1.8762 -6.7868 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001312840421.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:29 Heat of formation + Delta-G solvation = -65.121839 kcal Electronic energy + Delta-G solvation = -22333.562067 eV Core-core repulsion = 18927.645052 eV Total energy + Delta-G solvation = -3405.917015 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.78911 -39.67168 -37.31904 -36.66540 -34.73949 -33.35296 -31.86526 -31.17536 -28.55854 -26.47086 -26.31024 -25.06700 -24.09121 -21.38119 -21.09738 -20.53555 -19.18532 -18.19664 -17.75393 -17.06082 -16.64251 -15.81217 -15.45805 -15.34697 -14.78876 -14.45205 -14.35082 -14.00049 -13.79909 -13.72529 -13.31310 -12.76210 -12.72428 -12.59865 -12.40637 -12.06043 -11.82206 -11.81206 -11.48843 -11.27841 -10.61946 -10.24493 -10.19141 -10.08668 -9.95204 -9.93503 -9.58231 -9.16217 -9.08206 -8.90377 -8.39564 -8.05396 -6.57269 -4.09217 2.21338 2.76210 3.02999 3.30851 3.36766 3.48562 3.59677 3.85493 3.94787 4.17418 4.42039 4.48444 4.62133 4.84618 4.96154 5.04442 5.13701 5.26374 5.31855 5.51811 5.66392 5.80590 6.07252 6.09099 6.33082 6.37341 6.44209 6.45748 6.55080 6.55082 6.64822 6.71614 6.82282 6.98374 7.17044 7.27036 7.47618 7.83252 8.11490 8.30387 8.33266 8.85302 8.89247 9.55420 10.83140 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.034049 B = 0.003002 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.141823 B = 9325.810086 C = 9682.071713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.036 3.964 3 C -0.140 4.140 4 C -0.610 4.610 5 H 0.059 0.941 6 C 0.040 3.960 7 N -0.889 5.889 8 Si 1.058 2.942 9 H -0.300 1.300 10 H -0.277 1.277 11 H -0.287 1.287 12 C 0.161 3.839 13 N -0.737 5.737 14 C 0.699 3.301 15 O -0.596 6.596 16 N -0.754 5.754 17 C 0.152 3.848 18 C -0.115 4.115 19 H 0.100 0.900 20 C 0.109 3.891 21 N -0.734 5.734 22 C 0.520 3.480 23 O -0.535 6.535 24 C -0.155 4.155 25 H 0.042 0.958 26 H 0.026 0.974 27 H 0.050 0.950 28 H 0.045 0.955 29 H 0.020 0.980 30 H 0.055 0.945 31 H 0.271 0.729 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.392 0.608 35 H 0.394 0.606 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.411 0.589 41 H 0.105 0.895 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.957 2.543 -22.348 23.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.034 3.966 3 C -0.198 4.198 4 C -0.647 4.647 5 H 0.077 0.923 6 C -0.168 4.168 7 N -0.521 5.521 8 Si 0.892 3.108 9 H -0.228 1.228 10 H -0.204 1.204 11 H -0.215 1.215 12 C 0.038 3.962 13 N -0.391 5.391 14 C 0.399 3.601 15 O -0.475 6.475 16 N -0.411 5.411 17 C 0.026 3.974 18 C -0.134 4.134 19 H 0.118 0.882 20 C -0.016 4.016 21 N -0.390 5.390 22 C 0.306 3.694 23 O -0.412 6.412 24 C -0.195 4.195 25 H 0.060 0.940 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.039 0.961 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.227 0.773 35 H 0.228 0.772 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.249 0.751 41 H 0.123 0.877 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.918 3.093 -21.356 22.375 hybrid contribution 0.162 -0.355 -1.502 1.552 sum -5.756 2.737 -22.858 23.730 Atomic orbital electron populations 1.22348 0.99143 1.00372 0.98591 1.18647 0.91341 0.93063 0.93529 1.22215 1.00395 0.97638 0.99513 1.21610 1.41254 1.11393 0.90485 0.92262 1.25713 0.99998 0.98245 0.92831 1.70875 1.12170 1.31449 1.37585 0.84047 0.75972 0.76319 0.74465 1.22785 1.20433 1.21539 1.21399 0.98261 0.95232 0.81277 1.45531 1.55780 1.33049 1.04766 1.16022 0.80523 0.82985 0.80614 1.90908 1.42852 1.27683 1.86039 1.45043 1.57772 1.33543 1.04774 1.21036 0.99786 0.96881 0.79647 1.22427 1.01790 0.94732 0.94433 0.88177 1.22019 1.02633 0.87450 0.89516 1.46229 1.73939 1.09143 1.09651 1.20958 0.74691 0.84015 0.89713 1.90774 1.49541 1.21988 1.78855 1.22509 1.04487 0.97807 0.94670 0.94010 0.95530 0.93119 0.93582 0.96105 0.92590 0.91850 0.92430 0.92567 0.77345 0.77237 0.91182 0.90942 0.90240 0.89610 0.75056 0.87694 0.87137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 7.74 37.16 0.29 -2.64 16 2 C 0.04 0.78 0.50 -155.66 -0.08 0.70 16 3 C -0.14 -2.87 7.90 37.16 0.29 -2.58 16 4 C -0.61 -16.30 8.42 -34.44 -0.29 -16.59 16 5 H 0.06 1.73 7.99 -52.49 -0.42 1.31 16 6 C 0.04 1.09 5.06 -17.82 -0.09 1.00 16 7 N -0.89 -26.39 13.70 55.43 0.76 -25.63 16 8 Si 1.06 24.65 23.53 -169.99 -4.00 20.65 16 9 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 10 H -0.28 -5.85 5.73 56.52 0.32 -5.53 16 11 H -0.29 -6.34 6.69 56.52 0.38 -5.96 16 12 C 0.16 3.26 4.51 -4.04 -0.02 3.24 16 13 N -0.74 -11.74 5.02 -65.22 -0.33 -12.07 16 14 C 0.70 10.92 8.57 -86.92 -0.74 10.18 16 15 O -0.60 -11.91 16.34 5.29 0.09 -11.82 16 16 N -0.75 -7.64 5.45 -65.23 -0.36 -8.00 16 17 C 0.15 1.20 4.96 -4.05 -0.02 1.18 16 18 C -0.11 -0.57 3.18 -89.00 -0.28 -0.86 16 19 H 0.10 0.41 8.14 -51.92 -0.42 -0.01 16 20 C 0.11 0.44 7.35 -3.12 -0.02 0.42 16 21 N -0.73 -4.40 6.24 -59.18 -0.37 -4.77 16 22 C 0.52 4.80 8.43 -10.83 -0.09 4.71 16 23 O -0.54 -7.44 18.03 5.56 0.10 -7.34 16 24 C -0.15 -1.03 6.27 -26.71 -0.17 -1.20 16 25 H 0.04 0.87 2.27 -51.92 -0.12 0.75 16 26 H 0.03 0.43 7.00 -51.93 -0.36 0.06 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.02 0.34 7.02 -51.93 -0.36 -0.02 16 30 H 0.06 1.22 4.40 -51.93 -0.23 0.99 16 31 H 0.27 8.03 8.73 -40.82 -0.36 7.67 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.39 5.30 6.25 -40.82 -0.26 5.05 16 35 H 0.39 2.94 8.44 -40.82 -0.34 2.60 16 36 H 0.07 0.62 8.01 -51.93 -0.42 0.21 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.29 7.89 -51.93 -0.41 -0.12 16 39 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.41 1.93 8.96 -40.82 -0.37 1.56 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.11 0.77 7.81 -51.93 -0.41 0.37 16 LS Contribution 330.62 15.07 4.98 4.98 Total: -1.00 -34.71 330.62 -6.67 -41.39 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -6.32 Total: 5.05 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -1.22 Total: -2.44 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -0.29 Total: -50.47 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: 0.19 Total: -19.17 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -4.00 Total: 20.65 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.71 -6.67 -41.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001312840421.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.734 kcal (2) G-P(sol) polarization free energy of solvation -34.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds