Wall clock time and date at job start Tue Mar 31 2020 06:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47185 * 2 1 4 4 C 1.50699 * 109.47191 * 120.00479 * 2 1 3 5 5 H 1.07994 * 120.00491 * 114.23619 * 4 2 1 6 6 C 1.37884 * 119.99510 * 294.23186 * 4 2 1 7 7 N 1.31518 * 119.99849 * 209.34325 * 6 4 2 8 8 Si 1.86792 * 120.00175 * 29.35002 * 6 4 2 9 9 H 1.48501 * 109.47464 * 179.97438 * 8 6 4 10 10 H 1.48502 * 109.47210 * 299.99840 * 8 6 4 11 11 H 1.48504 * 109.47262 * 59.99611 * 8 6 4 12 12 C 1.53004 * 109.46825 * 239.99967 * 2 1 3 13 13 N 1.46504 * 109.46770 * 60.00137 * 12 2 1 14 14 C 1.34776 * 119.99733 * 179.97438 * 13 12 2 15 15 O 1.21589 * 119.99746 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00353 * 179.97438 * 14 13 12 17 17 C 1.46497 * 120.00478 * 179.97438 * 16 14 13 18 18 C 1.52991 * 109.47260 * 180.02562 * 17 16 14 19 19 H 1.09008 * 110.85931 * 305.70568 * 18 17 16 20 20 C 1.54475 * 110.97141 * 181.91520 * 18 17 16 21 21 N 1.46771 * 105.47487 * 216.46610 * 20 18 17 22 22 C 1.34419 * 111.30001 * 17.01341 * 21 20 18 23 23 O 1.21280 * 124.94242 * 179.61808 * 22 21 20 24 24 C 1.51347 * 110.12847 * 359.56090 * 22 21 20 25 25 H 1.09008 * 109.46707 * 295.40898 * 1 2 3 26 26 H 1.08995 * 109.47150 * 55.40180 * 1 2 3 27 27 H 1.08998 * 109.47282 * 175.40926 * 1 2 3 28 28 H 1.08998 * 109.46902 * 185.31585 * 3 2 1 29 29 H 1.08994 * 109.47096 * 305.31196 * 3 2 1 30 30 H 1.08992 * 109.46772 * 65.31669 * 3 2 1 31 31 H 0.97006 * 119.99913 * 354.99730 * 7 6 4 32 32 H 1.08997 * 109.46899 * 179.97438 * 12 2 1 33 33 H 1.08997 * 109.47094 * 300.00462 * 12 2 1 34 34 H 0.96999 * 120.00080 * 0.02562 * 13 12 2 35 35 H 0.96999 * 119.99460 * 0.02562 * 16 14 13 36 36 H 1.08997 * 109.47091 * 300.00741 * 17 16 14 37 37 H 1.09003 * 109.46711 * 60.00559 * 17 16 14 38 38 H 1.09000 * 110.24595 * 335.45991 * 20 18 17 39 39 H 1.08999 * 110.25146 * 97.37854 * 20 18 17 40 40 H 0.97002 * 124.34866 * 196.99317 * 21 20 18 41 41 H 1.08995 * 110.51895 * 225.11739 * 24 22 21 42 42 H 1.09003 * 110.47403 * 102.46055 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5743 -1.6396 1.1340 6 6 1.8001 -0.1742 2.4792 7 7 2.6478 -0.3986 3.4593 8 14 0.2812 0.8709 2.7791 9 1 0.2632 1.3240 4.1932 10 1 0.3083 2.0529 1.8805 11 1 -0.9359 0.0664 2.5021 12 6 2.0400 -0.7213 -1.2493 13 7 1.5516 -0.0306 -2.4454 14 6 1.8775 -0.4907 -3.6695 15 8 2.5773 -1.4788 -3.7811 16 7 1.4278 0.1443 -4.7700 17 6 1.7826 -0.3555 -6.1006 18 6 1.1492 0.5398 -7.1673 19 1 0.0738 0.6271 -7.0122 20 6 1.4623 0.0155 -8.5862 21 7 1.6460 1.2131 -9.4146 22 6 1.8546 2.3036 -8.6568 23 8 2.0423 3.4222 -9.0861 24 6 1.8197 1.9329 -7.1899 25 1 -0.3633 0.4410 0.9283 26 1 -0.3633 0.5835 -0.8459 27 1 -0.3634 -1.0243 -0.0822 28 1 3.1259 1.4440 -0.0952 29 1 1.6012 1.9831 -0.8385 30 1 1.7566 1.9281 0.9337 31 1 3.3972 -0.9997 3.3243 32 1 3.1299 -0.7209 -1.2495 33 1 1.6765 -1.7489 -1.2493 34 1 0.9942 0.7583 -2.3564 35 1 0.8699 0.9328 -4.6809 36 1 2.8665 -0.3458 -6.2153 37 1 1.4142 -1.3749 -6.2159 38 1 2.3756 -0.5793 -8.5755 39 1 0.6295 -0.5796 -8.9608 40 1 1.6204 1.2171 -10.3842 41 1 1.2240 2.6523 -6.6281 42 1 2.8309 1.8762 -6.7868 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001312840421.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:28 Heat of formation + Delta-G solvation = -95.174905 kcal Electronic energy + Delta-G solvation = -22334.865266 eV Core-core repulsion = 18927.645052 eV Total energy + Delta-G solvation = -3407.220214 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.46447 -40.85883 -38.55990 -37.80072 -35.67046 -35.01431 -33.42136 -32.19829 -29.16130 -27.96815 -27.62292 -26.58044 -25.57438 -22.11153 -21.83780 -21.45501 -20.94178 -19.49285 -18.58225 -18.34501 -17.74027 -16.88355 -16.61984 -16.43769 -15.99729 -15.62545 -15.36739 -15.25273 -14.74168 -14.51014 -14.38840 -14.25630 -14.15934 -13.95093 -13.56314 -13.51604 -13.10566 -12.85910 -12.41932 -12.29470 -11.99739 -11.98053 -11.83537 -11.65192 -11.32756 -10.98375 -10.97488 -10.63128 -10.30123 -10.15926 -10.10330 -9.65569 -8.76974 -6.28662 1.46380 1.53665 1.54973 1.77383 1.78406 2.24033 2.46046 2.50329 3.03914 3.30015 3.34514 3.58170 3.76552 4.09650 4.14797 4.33830 4.36375 4.48515 4.63061 4.64248 4.75196 4.78363 4.83182 4.88046 4.89325 4.95731 4.98393 5.11874 5.18629 5.21556 5.50661 5.56279 5.61172 5.82773 5.84463 5.99981 6.05277 6.10724 6.21016 6.62577 7.20536 7.22660 7.45577 7.67659 8.62202 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.034049 B = 0.003002 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.141823 B = 9325.810086 C = 9682.071713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.033 3.967 3 C -0.138 4.138 4 C -0.615 4.615 5 H 0.013 0.987 6 C -0.011 4.011 7 N -0.927 5.927 8 Si 1.094 2.906 9 H -0.314 1.314 10 H -0.233 1.233 11 H -0.265 1.265 12 C 0.179 3.821 13 N -0.727 5.727 14 C 0.697 3.303 15 O -0.644 6.644 16 N -0.730 5.730 17 C 0.150 3.850 18 C -0.096 4.096 19 H 0.122 0.878 20 C 0.107 3.893 21 N -0.722 5.722 22 C 0.511 3.489 23 O -0.592 6.592 24 C -0.152 4.152 25 H 0.037 0.963 26 H 0.073 0.927 27 H 0.045 0.955 28 H 0.028 0.972 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.253 0.747 32 H 0.028 0.972 33 H 0.035 0.965 34 H 0.409 0.591 35 H 0.413 0.587 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.417 0.583 41 H 0.115 0.885 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.833 3.954 -24.642 26.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.032 3.968 3 C -0.195 4.195 4 C -0.652 4.652 5 H 0.031 0.969 6 C -0.210 4.210 7 N -0.561 5.561 8 Si 0.920 3.080 9 H -0.243 1.243 10 H -0.158 1.158 11 H -0.191 1.191 12 C 0.054 3.946 13 N -0.383 5.383 14 C 0.396 3.604 15 O -0.526 6.526 16 N -0.387 5.387 17 C 0.026 3.974 18 C -0.115 4.115 19 H 0.140 0.860 20 C -0.017 4.017 21 N -0.377 5.377 22 C 0.298 3.702 23 O -0.473 6.473 24 C -0.192 4.192 25 H 0.056 0.944 26 H 0.092 0.908 27 H 0.064 0.936 28 H 0.048 0.952 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.246 0.754 35 H 0.249 0.751 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.132 0.868 40 H 0.257 0.743 41 H 0.133 0.867 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.834 4.502 -23.733 25.721 hybrid contribution 1.154 -0.936 -0.888 1.732 sum -7.680 3.565 -24.621 26.036 Atomic orbital electron populations 1.22256 0.96550 1.01131 1.00388 1.18585 0.93329 0.93410 0.91521 1.22131 0.99726 0.96706 1.00934 1.21882 1.40151 1.10001 0.93212 0.96906 1.27165 1.01764 0.99523 0.92593 1.71021 1.13072 1.33200 1.38851 0.83673 0.73014 0.76808 0.74511 1.24313 1.15761 1.19145 1.20832 0.96401 0.94537 0.82787 1.45109 1.56071 1.33328 1.03758 1.16178 0.80160 0.82645 0.81378 1.90888 1.44965 1.29984 1.86733 1.44848 1.56607 1.33265 1.04022 1.21170 0.99592 0.97673 0.78993 1.22311 1.02464 0.92866 0.93908 0.86021 1.22215 1.04231 0.86685 0.88543 1.46282 1.72122 1.09020 1.10226 1.21403 0.74018 0.83720 0.91034 1.90743 1.52395 1.24283 1.79904 1.22514 1.04702 0.98971 0.93024 0.94440 0.90802 0.93623 0.95228 0.91361 0.93604 0.93762 0.95389 0.94667 0.75382 0.75079 0.92180 0.90782 0.89513 0.86817 0.74333 0.86717 0.87557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.24 7.74 71.98 0.56 -4.68 16 2 C 0.03 1.39 0.50 -52.92 -0.03 1.37 16 3 C -0.14 -5.25 7.90 71.98 0.57 -4.68 16 4 C -0.61 -33.76 8.42 25.60 0.22 -33.55 16 5 H 0.01 0.79 7.99 -2.91 -0.02 0.76 16 6 C -0.01 -0.60 5.06 84.66 0.43 -0.17 16 7 N -0.93 -57.29 13.70 21.45 0.29 -57.00 16 8 Si 1.09 48.08 23.53 68.60 1.61 49.69 16 9 H -0.31 -14.50 7.11 99.48 0.71 -13.79 16 10 H -0.23 -8.61 5.73 99.48 0.57 -8.04 16 11 H -0.26 -10.63 6.69 99.48 0.67 -9.96 16 12 C 0.18 7.20 4.51 86.38 0.39 7.59 16 13 N -0.73 -21.20 5.02 -478.53 -2.40 -23.61 16 14 C 0.70 20.26 8.57 179.05 1.53 21.79 16 15 O -0.64 -25.35 16.34 -4.00 -0.07 -25.42 16 16 N -0.73 -12.23 5.45 -478.55 -2.61 -14.84 16 17 C 0.15 1.90 4.96 86.38 0.43 2.33 16 18 C -0.10 -0.59 3.18 -9.74 -0.03 -0.62 16 19 H 0.12 0.35 8.14 -2.38 -0.02 0.33 16 20 C 0.11 0.47 7.35 86.83 0.64 1.11 16 21 N -0.72 -6.90 6.24 -459.72 -2.87 -9.77 16 22 C 0.51 8.62 8.43 87.92 0.74 9.36 16 23 O -0.59 -16.34 18.03 -3.03 -0.05 -16.39 16 24 C -0.15 -1.61 6.27 30.61 0.19 -1.42 16 25 H 0.04 1.39 2.27 -2.38 -0.01 1.39 16 26 H 0.07 1.95 7.00 -2.39 -0.02 1.93 16 27 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.07 1.94 7.02 -2.39 -0.02 1.93 16 30 H 0.05 1.84 4.40 -2.39 -0.01 1.83 16 31 H 0.25 15.98 8.73 -92.70 -0.81 15.17 16 32 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.41 9.05 6.25 -92.71 -0.58 8.47 16 35 H 0.41 4.16 8.44 -92.71 -0.78 3.38 16 36 H 0.06 0.94 8.01 -2.39 -0.02 0.92 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.09 0.33 7.89 -2.39 -0.02 0.31 16 39 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 40 H 0.42 3.03 8.96 -92.71 -0.83 2.20 16 41 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.11 1.26 7.81 -2.39 -0.02 1.24 16 Total: -1.00 -81.53 330.62 -1.80 -83.33 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -1.34 Total: 15.59 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 5.64 Total: -1.59 kcal Atomic # 7 Polarization: -97.63 SS G_CDS: -7.59 Total: -105.22 kcal Atomic # 8 Polarization: -41.69 SS G_CDS: -0.12 Total: -41.81 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 1.61 Total: 49.69 kcal Total: -81.53 -1.80 -83.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001312840421.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.840 kcal (2) G-P(sol) polarization free energy of solvation -81.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds