Wall clock time and date at job start Tue Mar 31 2020 06:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31640 * 1 3 3 Si 1.86792 * 119.99889 * 2 1 4 4 H 1.48504 * 109.46935 * 239.99734 * 3 2 1 5 5 H 1.48500 * 109.47191 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47402 * 119.99735 * 3 2 1 7 7 C 1.38801 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99380 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00163 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00068 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47647 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47486 * 180.02562 * 11 10 9 13 13 N 1.46893 * 109.47069 * 180.02562 * 12 11 10 14 14 C 1.46826 * 111.00479 * 66.04533 * 13 12 11 15 15 C 1.53070 * 109.60224 * 174.32729 * 14 13 12 16 16 C 1.53046 * 109.20187 * 58.90291 * 15 14 13 17 17 H 1.09000 * 109.42588 * 61.82875 * 16 15 14 18 18 C 1.52829 * 109.73931 * 181.72868 * 16 15 14 19 19 C 1.52983 * 109.63578 * 60.44544 * 18 16 15 20 20 C 1.53032 * 109.36037 * 59.92594 * 19 18 16 21 21 C 1.52962 * 109.40377 * 299.74738 * 20 19 18 22 22 C 1.53044 * 109.58839 * 60.24017 * 21 20 19 23 23 H 1.09003 * 109.60402 * 60.60744 * 22 21 20 24 24 C 1.46858 * 110.99884 * 301.70124 * 13 12 11 25 25 H 0.97001 * 119.99781 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47013 * 300.00500 * 10 9 7 27 27 H 1.09004 * 109.47116 * 59.99987 * 10 9 7 28 28 H 1.09001 * 109.46652 * 299.99906 * 11 10 9 29 29 H 1.08996 * 109.46778 * 59.99708 * 11 10 9 30 30 H 1.09001 * 109.46993 * 300.00128 * 12 11 10 31 31 H 1.09000 * 109.47380 * 59.99233 * 12 11 10 32 32 H 1.09004 * 109.44667 * 294.36049 * 14 13 12 33 33 H 1.08996 * 109.44985 * 54.28374 * 14 13 12 34 34 H 1.09005 * 109.51049 * 178.81839 * 15 14 13 35 35 H 1.09000 * 109.51152 * 298.98163 * 15 14 13 36 36 H 1.09003 * 109.44178 * 180.49860 * 18 16 15 37 37 H 1.08998 * 109.44227 * 300.39002 * 18 16 15 38 38 H 1.08999 * 109.49307 * 299.96059 * 19 18 16 39 39 H 1.08995 * 109.50774 * 179.89788 * 19 18 16 40 40 H 1.08994 * 109.47993 * 179.77052 * 20 19 18 41 41 H 1.08999 * 109.48324 * 59.73061 * 20 19 18 42 42 H 1.09001 * 109.45460 * 300.20292 * 21 20 19 43 43 H 1.08997 * 109.44942 * 180.27257 * 21 20 19 44 44 H 1.08997 * 109.49442 * 305.99077 * 24 13 12 45 45 H 1.09001 * 109.48982 * 66.06098 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0019 10 6 2.5158 -3.8915 0.0029 11 6 1.9793 -5.3243 0.0036 12 6 3.1513 -6.3078 0.0051 13 7 2.6362 -7.6834 0.0051 14 6 1.9317 -7.9816 -1.2481 15 6 1.5326 -9.4591 -1.2739 16 6 0.6344 -9.7590 -0.0716 17 1 -0.2744 -9.1611 -0.1400 18 6 0.2634 -11.2415 -0.0615 19 6 1.5330 -12.0884 0.0452 20 6 2.2698 -11.7372 1.3397 21 6 2.6488 -10.2554 1.3227 22 6 1.3823 -9.4030 1.2158 23 1 0.7403 -9.5924 2.0761 24 6 1.7757 -7.9232 1.1708 25 1 -0.4850 0.8401 -0.0004 26 1 3.1245 -3.7321 -0.8872 27 1 3.1244 -3.7306 0.8928 28 1 1.3705 -5.4839 0.8935 29 1 1.3710 -5.4848 -0.8865 30 1 3.7606 -6.1483 -0.8846 31 1 3.7594 -6.1470 0.8953 32 1 1.0370 -7.3628 -1.3176 33 1 2.5869 -7.7677 -2.0925 34 1 0.9914 -9.6740 -2.1954 35 1 2.4278 -10.0789 -1.2234 36 1 -0.3832 -11.4479 0.7914 37 1 -0.2623 -11.4903 -0.9833 38 1 2.1795 -11.8838 -0.8081 39 1 1.2659 -13.1451 0.0541 40 1 3.1726 -12.3425 1.4197 41 1 1.6213 -11.9368 2.1928 42 1 3.2941 -10.0556 0.4673 43 1 3.1780 -10.0056 2.2423 44 1 2.3156 -7.6626 2.0811 45 1 0.8777 -7.3104 1.0922 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319255142.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:04 Heat of formation + Delta-G solvation = -38.216980 kcal Electronic energy + Delta-G solvation = -20588.953455 eV Core-core repulsion = 17730.496336 eV Total energy + Delta-G solvation = -2858.457119 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.167 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.42092 -37.13949 -33.35339 -32.42825 -32.22994 -30.76205 -29.28142 -26.06199 -25.47296 -23.85232 -22.77842 -22.31734 -21.62063 -20.31188 -17.92857 -17.44262 -15.96940 -15.63485 -15.49499 -14.80322 -14.75138 -14.43289 -14.22343 -13.94423 -13.91289 -13.23508 -13.11161 -12.93237 -12.42742 -12.29168 -12.12842 -11.83721 -11.71359 -11.52672 -11.35227 -11.14035 -11.05106 -10.99167 -10.76570 -10.71829 -10.69199 -10.23078 -10.08467 -10.02265 -9.92975 -9.66348 -9.04860 -8.35290 -8.02860 -6.53044 -6.22401 -3.92874 3.22123 3.23322 3.27889 3.58986 4.01863 4.23009 4.50944 4.52370 4.59495 4.94812 5.08804 5.10346 5.11223 5.13512 5.20338 5.29721 5.32336 5.38354 5.43635 5.47507 5.56087 5.61927 5.64343 5.68062 5.71971 5.77064 5.83926 5.87097 5.90069 5.96223 5.97597 6.06927 6.08731 6.12547 6.17646 6.27677 6.31501 6.38675 6.51109 6.54677 6.73448 7.18027 7.19686 7.60499 8.36795 9.23697 10.85791 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.046585 B = 0.002844 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.909656 B = 9841.415354 C = 9974.345580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.070 3.930 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.072 0.928 9 S -0.138 6.138 10 C -0.108 4.108 11 C -0.134 4.134 12 C 0.058 3.942 13 N -0.532 5.532 14 C 0.050 3.950 15 C -0.113 4.113 16 C -0.085 4.085 17 H 0.065 0.935 18 C -0.112 4.112 19 C -0.120 4.120 20 C -0.120 4.120 21 C -0.107 4.107 22 C -0.077 4.077 23 H 0.069 0.931 24 C 0.054 3.946 25 H 0.267 0.733 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.055 0.945 44 H 0.073 0.927 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.506 -23.191 0.386 23.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.138 4.138 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.664 4.664 8 H 0.090 0.910 9 S 0.090 5.910 10 C -0.258 4.258 11 C -0.174 4.174 12 C -0.071 4.071 13 N -0.255 5.255 14 C -0.078 4.078 15 C -0.150 4.150 16 C -0.104 4.104 17 H 0.084 0.916 18 C -0.150 4.150 19 C -0.157 4.157 20 C -0.158 4.158 21 C -0.145 4.145 22 C -0.096 4.096 23 H 0.088 0.912 24 C -0.074 4.074 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.618 -23.592 0.417 23.741 hybrid contribution 1.077 1.980 -0.038 2.254 sum 3.695 -21.612 0.379 21.929 Atomic orbital electron populations 1.70022 1.05929 1.27404 1.47265 1.25023 0.95089 0.99099 0.94618 0.86220 0.79232 0.81199 0.78859 1.19929 1.20816 1.19924 1.22646 0.94460 0.90781 1.58495 0.91019 1.84615 1.09930 0.99601 1.96861 1.23182 1.02645 0.97183 1.02749 1.21935 0.98754 0.94164 1.02520 1.22261 0.96692 0.85522 1.02652 1.62174 1.37405 1.23759 1.02161 1.22113 0.97409 0.95953 0.92310 1.21715 0.99855 0.96136 0.97315 1.21126 0.98119 0.95908 0.95213 0.91621 1.21490 0.97314 0.94722 1.01454 1.21560 0.97095 0.98746 0.98332 1.21559 0.99695 0.97011 0.97525 1.21508 0.97284 0.93135 1.02546 1.21219 0.96785 0.94392 0.97228 0.91229 1.22172 0.95915 0.95468 0.93804 0.92278 0.92218 0.92182 0.91541 0.91699 0.90877 0.90790 0.94343 0.90974 0.91984 0.90682 0.92232 0.92257 0.91704 0.92636 0.92464 0.92537 0.90271 0.92604 0.90851 0.94099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 3 Si 0.92 21.73 29.55 -169.99 -5.02 16.71 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.52 -14.98 9.50 30.94 0.29 -14.69 16 8 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 9 S -0.14 -3.68 21.44 -107.50 -2.30 -5.98 16 10 C -0.11 -2.21 5.67 37.16 0.21 -2.00 16 11 C -0.13 -2.20 4.52 -26.73 -0.12 -2.32 16 12 C 0.06 0.78 5.36 -3.83 -0.02 0.76 16 13 N -0.53 -6.42 4.05 -234.57 -0.95 -7.37 16 14 C 0.05 0.58 5.06 -3.83 -0.02 0.56 16 15 C -0.11 -1.09 4.74 -26.67 -0.13 -1.21 16 16 C -0.09 -0.81 2.47 -90.64 -0.22 -1.03 16 17 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 18 C -0.11 -0.92 5.44 -26.83 -0.15 -1.06 16 19 C -0.12 -0.93 5.66 -26.72 -0.15 -1.08 16 20 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 21 C -0.11 -1.00 4.77 -26.73 -0.13 -1.13 16 22 C -0.08 -0.77 2.56 -90.45 -0.23 -1.00 16 23 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 24 C 0.05 0.63 4.27 -3.75 -0.02 0.62 16 25 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 27 H 0.06 1.22 8.14 -51.91 -0.42 0.79 16 28 H 0.07 1.13 6.51 -51.93 -0.34 0.79 16 29 H 0.06 1.10 6.68 -51.93 -0.35 0.76 16 30 H 0.07 0.96 8.06 -51.93 -0.42 0.55 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.04 0.49 6.74 -51.93 -0.35 0.14 16 33 H 0.07 0.81 8.06 -51.93 -0.42 0.39 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.73 4.88 -51.93 -0.25 0.47 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.52 6.44 -51.93 -0.33 0.18 16 39 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.82 5.92 -51.93 -0.31 0.52 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 45 H 0.04 0.53 6.62 -51.93 -0.34 0.19 16 LS Contribution 342.88 15.07 5.17 5.17 Total: -1.00 -30.17 342.88 -11.46 -41.63 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -8.15 Total: -1.81 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: -0.93 Total: -22.78 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: -0.22 Total: -32.94 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -2.30 Total: -5.98 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.17 -11.46 -41.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319255142.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.417 kcal (2) G-P(sol) polarization free energy of solvation -30.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds