Wall clock time and date at job start Tue Mar 31 2020 06:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86802 * 119.99898 * 2 1 4 4 H 1.48507 * 109.46980 * 269.99461 * 3 2 1 5 5 H 1.48499 * 109.47520 * 29.99747 * 3 2 1 6 6 H 1.48503 * 109.47148 * 149.99548 * 3 2 1 7 7 C 1.38804 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00178 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99577 * 0.02562 * 7 2 1 10 10 C 1.81008 * 99.99538 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47094 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47239 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46974 * 180.02562 * 12 11 10 14 14 C 1.46826 * 111.00006 * 66.05098 * 13 12 11 15 15 C 1.53048 * 109.60921 * 174.31625 * 14 13 12 16 16 C 1.53243 * 109.14064 * 59.27320 * 15 14 13 17 17 H 1.09007 * 109.62329 * 181.48362 * 16 15 14 18 18 C 1.53041 * 109.11627 * 61.42257 * 16 15 14 19 19 C 1.52966 * 109.58085 * 181.22093 * 18 16 15 20 20 C 1.53023 * 109.41154 * 60.21358 * 19 18 16 21 21 C 1.52986 * 109.37223 * 299.77279 * 20 19 18 22 22 C 1.52848 * 109.61580 * 59.93728 * 21 20 19 23 23 H 1.08995 * 109.40023 * 180.34881 * 22 21 20 24 24 C 1.46871 * 111.00142 * 301.73927 * 13 12 11 25 25 H 0.97001 * 120.00014 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47012 * 60.00597 * 10 9 7 27 27 H 1.08994 * 109.47518 * 300.00196 * 10 9 7 28 28 H 1.09001 * 109.46677 * 60.00121 * 11 10 9 29 29 H 1.08994 * 109.47400 * 300.00639 * 11 10 9 30 30 H 1.09001 * 109.47085 * 60.00496 * 12 11 10 31 31 H 1.08994 * 109.47548 * 300.00674 * 12 11 10 32 32 H 1.09000 * 109.44258 * 294.36016 * 14 13 12 33 33 H 1.09000 * 109.44749 * 54.27265 * 14 13 12 34 34 H 1.09004 * 109.52013 * 179.17278 * 15 14 13 35 35 H 1.08993 * 109.52567 * 299.30004 * 15 14 13 36 36 H 1.08993 * 109.44887 * 301.25852 * 18 16 15 37 37 H 1.08997 * 109.44908 * 61.18846 * 18 16 15 38 38 H 1.08990 * 109.48149 * 180.19341 * 19 18 16 39 39 H 1.08997 * 109.47914 * 300.22282 * 19 18 16 40 40 H 1.09002 * 109.48737 * 59.75121 * 20 19 18 41 41 H 1.08999 * 109.48536 * 179.78597 * 20 19 18 42 42 H 1.08997 * 109.44729 * 179.97438 * 21 20 19 43 43 H 1.08999 * 109.45001 * 299.92123 * 21 20 19 44 44 H 1.09008 * 109.47185 * 305.63077 * 24 13 12 45 45 H 1.08993 * 109.47860 * 65.64467 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6528 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9794 -5.3243 0.0012 12 6 3.1514 -6.3077 0.0005 13 7 2.6362 -7.6834 0.0005 14 6 1.9301 -7.9809 -1.2519 15 6 1.5312 -9.4582 -1.2783 16 6 0.6260 -9.7558 -0.0782 17 1 0.3583 -10.8125 -0.0746 18 6 -0.6417 -8.9049 -0.1834 19 6 -1.5398 -9.1712 1.0259 20 6 -0.7893 -8.8030 2.3076 21 6 0.4760 -9.6559 2.4177 22 6 1.3748 -9.3990 1.2084 23 1 2.2720 -10.0129 1.2873 24 6 1.7766 -7.9236 1.1670 25 1 -0.4850 0.8401 -0.0004 26 1 3.1244 -3.7314 0.8906 27 1 3.1245 -3.7314 -0.8894 28 1 1.3705 -5.4846 -0.8886 29 1 1.3710 -5.4841 0.8913 30 1 3.7606 -6.1475 0.8901 31 1 3.7595 -6.1478 -0.8898 32 1 1.0354 -7.3620 -1.3198 33 1 2.5842 -7.7664 -2.0971 34 1 0.9943 -9.6740 -2.2021 35 1 2.4259 -10.0782 -1.2237 36 1 -0.3696 -7.8497 -0.2082 37 1 -1.1772 -9.1629 -1.0970 38 1 -2.4435 -8.5671 0.9476 39 1 -1.8094 -10.2270 1.0529 40 1 -0.5156 -7.7483 2.2785 41 1 -1.4295 -8.9887 3.1700 42 1 1.0118 -9.3943 3.3301 43 1 0.2014 -10.7104 2.4477 44 1 2.3198 -7.6692 2.0772 45 1 0.8821 -7.3053 1.0927 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319255143.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:07 Heat of formation + Delta-G solvation = -37.657665 kcal Electronic energy + Delta-G solvation = -20914.227241 eV Core-core repulsion = 18055.794376 eV Total energy + Delta-G solvation = -2858.432865 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.167 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.53087 -36.90409 -33.74617 -32.43780 -32.14008 -30.81009 -28.76519 -26.22207 -25.49084 -24.01479 -22.99664 -22.31914 -21.29798 -20.33618 -17.85234 -17.41681 -15.88813 -15.69564 -15.32441 -15.03403 -14.80206 -14.57729 -14.19734 -13.93034 -13.64987 -13.46414 -12.93839 -12.76544 -12.54074 -12.27654 -12.18356 -11.81350 -11.69808 -11.45833 -11.32086 -11.16314 -11.05256 -10.96904 -10.81369 -10.72017 -10.59611 -10.26404 -10.13141 -9.99205 -9.93137 -9.64245 -9.05694 -8.34453 -7.99228 -6.53055 -6.22693 -3.93015 3.21657 3.22589 3.29176 3.58959 3.99238 4.22772 4.54627 4.55297 4.64807 4.95179 5.01391 5.13006 5.14020 5.22297 5.24662 5.31399 5.34647 5.39542 5.42921 5.47393 5.55818 5.58462 5.61307 5.68089 5.72070 5.78066 5.87421 5.89541 5.93612 5.97642 6.01365 6.07543 6.12533 6.12978 6.21293 6.27905 6.31950 6.37240 6.46082 6.53972 6.72981 7.19279 7.20431 7.60714 8.36898 9.23674 10.85543 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.026618 B = 0.003473 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.684890 B = 8060.737306 C = 8476.537816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.515 4.515 8 H 0.072 0.928 9 S -0.138 6.138 10 C -0.108 4.108 11 C -0.134 4.134 12 C 0.058 3.942 13 N -0.536 5.536 14 C 0.049 3.951 15 C -0.112 4.112 16 C -0.081 4.081 17 H 0.068 0.932 18 C -0.122 4.122 19 C -0.117 4.117 20 C -0.125 4.125 21 C -0.112 4.112 22 C -0.078 4.078 23 H 0.073 0.927 24 C 0.053 3.947 25 H 0.267 0.733 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.037 -21.037 1.217 21.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.138 4.138 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.664 4.664 8 H 0.090 0.910 9 S 0.090 5.910 10 C -0.258 4.258 11 C -0.173 4.173 12 C -0.071 4.071 13 N -0.259 5.259 14 C -0.079 4.079 15 C -0.149 4.149 16 C -0.100 4.100 17 H 0.086 0.914 18 C -0.160 4.160 19 C -0.155 4.155 20 C -0.162 4.162 21 C -0.150 4.150 22 C -0.097 4.097 23 H 0.092 0.908 24 C -0.075 4.075 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.160 -21.436 1.248 21.473 hybrid contribution 1.153 1.951 -0.083 2.268 sum 1.313 -19.485 1.164 19.564 Atomic orbital electron populations 1.70026 1.05934 1.27290 1.47346 1.25014 0.95070 0.99079 0.94603 0.86173 0.79469 0.81557 0.78375 1.20266 1.20750 1.19662 1.22691 0.94500 0.90777 1.58401 0.90973 1.84611 1.09901 0.99602 1.96857 1.23182 1.02666 0.97158 1.02766 1.21933 0.98749 0.94194 1.02465 1.22263 0.96705 0.85506 1.02662 1.62182 1.37556 1.23873 1.02268 1.22139 0.97468 0.96027 0.92298 1.21645 0.99327 0.96332 0.97646 1.21189 0.94823 0.99293 0.94699 0.91400 1.21722 0.95601 1.00841 0.97787 1.21497 0.98158 1.01012 0.94797 1.21596 0.96557 1.00576 0.97472 1.21488 0.96057 0.99766 0.97687 1.21080 0.97843 0.96518 0.94214 0.90821 1.22233 0.95958 0.95773 0.93496 0.92336 0.92178 0.92202 0.91731 0.91564 0.90798 0.90859 0.93922 0.91096 0.91768 0.91395 0.91303 0.92254 0.92118 0.92379 0.91447 0.92255 0.91985 0.92071 0.91153 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 2 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 21.70 29.55 -169.99 -5.02 16.67 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -14.96 9.50 30.94 0.29 -14.67 16 8 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 9 S -0.14 -3.65 21.44 -107.50 -2.30 -5.96 16 10 C -0.11 -2.22 5.67 37.16 0.21 -2.01 16 11 C -0.13 -2.20 4.52 -26.73 -0.12 -2.32 16 12 C 0.06 0.80 5.36 -3.83 -0.02 0.77 16 13 N -0.54 -6.69 4.85 -234.70 -1.14 -7.83 16 14 C 0.05 0.57 4.80 -3.84 -0.02 0.55 16 15 C -0.11 -1.10 5.60 -26.58 -0.15 -1.25 16 16 C -0.08 -0.78 2.57 -90.43 -0.23 -1.01 16 17 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 18 C -0.12 -1.24 4.63 -26.73 -0.12 -1.37 16 19 C -0.12 -1.11 5.92 -26.74 -0.16 -1.27 16 20 C -0.12 -1.20 5.66 -26.73 -0.15 -1.36 16 21 C -0.11 -1.01 5.44 -26.82 -0.15 -1.16 16 22 C -0.08 -0.78 2.56 -90.67 -0.23 -1.01 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 24 C 0.05 0.63 3.57 -3.85 -0.01 0.61 16 25 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 27 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 28 H 0.06 1.10 6.68 -51.93 -0.35 0.75 16 29 H 0.07 1.12 6.50 -51.93 -0.34 0.79 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 0.98 8.06 -51.93 -0.42 0.56 16 32 H 0.04 0.55 5.02 -51.93 -0.26 0.29 16 33 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.83 4.80 -51.93 -0.25 0.58 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.75 6.48 -51.93 -0.34 0.41 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.85 8.13 -51.92 -0.42 0.42 16 45 H 0.05 0.64 3.34 -51.93 -0.17 0.47 16 LS Contribution 340.72 15.07 5.13 5.13 Total: -1.00 -30.24 340.72 -11.56 -41.81 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -8.00 Total: -0.81 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -0.96 Total: -23.53 kcal Atomic # 7 Polarization: -32.91 SS G_CDS: -0.41 Total: -33.32 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -2.30 Total: -5.96 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.24 -11.56 -41.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319255143.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.148 kcal (2) G-P(sol) polarization free energy of solvation -30.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds