Wall clock time and date at job start Tue Mar 31 2020 06:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 119.99779 * 2 1 4 4 N 1.34777 * 120.00059 * 180.02562 * 2 1 3 5 5 C 1.46502 * 120.00047 * 359.97438 * 4 2 1 6 6 C 1.46503 * 119.99878 * 179.97438 * 4 2 1 7 7 C 1.53354 * 109.41335 * 240.12429 * 6 4 2 8 8 C 1.53195 * 109.14570 * 178.67466 * 7 6 4 9 9 N 1.46926 * 108.89465 * 54.57617 * 8 7 6 10 10 C 1.34774 * 120.63121 * 126.33965 * 9 8 7 11 11 O 1.21582 * 120.00014 * 354.77536 * 10 9 8 12 12 N 1.34782 * 119.99915 * 174.77166 * 10 9 8 13 13 C 1.46498 * 119.99675 * 184.98301 * 12 10 9 14 14 C 1.50704 * 109.47096 * 180.02562 * 13 12 10 15 15 H 1.07997 * 119.99499 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00354 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99726 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00093 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46977 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46636 * 119.99923 * 18 16 14 21 21 H 1.48495 * 109.47132 * 239.99674 * 18 16 14 22 22 C 1.46926 * 118.73722 * 306.32250 * 9 8 7 23 23 C 1.53040 * 109.45930 * 119.99824 * 6 4 2 24 24 H 1.09006 * 109.46472 * 239.99280 * 1 2 3 25 25 H 1.08994 * 109.47006 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47404 * 119.99656 * 1 2 3 27 27 H 1.09002 * 109.47249 * 270.00595 * 5 4 2 28 28 H 1.08996 * 109.47050 * 30.00149 * 5 4 2 29 29 H 1.08999 * 109.46685 * 150.00436 * 5 4 2 30 30 H 1.08994 * 109.44759 * 0.02900 * 6 4 2 31 31 H 1.08997 * 109.68505 * 58.71314 * 7 6 4 32 32 H 1.09002 * 109.47645 * 298.50942 * 7 6 4 33 33 H 1.08999 * 109.58875 * 294.71912 * 8 7 6 34 34 H 1.09002 * 109.58604 * 174.43479 * 8 7 6 35 35 H 0.96993 * 119.99639 * 4.98764 * 12 10 9 36 36 H 1.09007 * 109.47228 * 300.00071 * 13 12 10 37 37 H 1.08998 * 109.47443 * 60.00096 * 13 12 10 38 38 H 0.96998 * 119.99708 * 180.02562 * 17 16 14 39 39 H 1.09010 * 109.58451 * 173.39329 * 22 9 8 40 40 H 1.08999 * 109.58904 * 293.67543 * 22 9 8 41 41 H 1.08993 * 109.50186 * 61.43117 * 23 6 4 42 42 H 1.09004 * 109.52060 * 301.34958 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4484 -2.4359 -0.0005 6 6 3.6460 -1.1671 -0.0011 7 6 4.1552 -1.8873 -1.2556 8 6 5.6868 -1.8547 -1.2668 9 7 6.1838 -2.4159 -0.0031 10 6 7.0780 -3.4243 -0.0042 11 8 7.4093 -3.9418 -1.0533 12 7 7.6051 -3.8589 1.1576 13 6 8.6566 -4.8789 1.1488 14 6 9.0695 -5.1870 2.5650 15 1 8.5963 -4.6740 3.3891 16 6 10.0521 -6.1231 2.8085 17 7 10.6287 -6.7475 1.8048 18 14 10.5644 -6.5045 4.5639 19 1 9.7692 -5.6734 5.5032 20 1 10.3225 -7.9417 4.8489 21 1 12.0081 -6.2020 4.7350 22 6 5.6878 -1.8566 1.2617 23 6 4.1563 -1.8889 1.2482 24 1 -0.3632 -0.5140 0.8900 25 1 -0.3633 1.0276 0.0005 26 1 -0.3634 -0.5138 -0.8900 27 1 1.2671 -2.7508 1.0272 28 1 0.4959 -2.3055 -0.5140 29 1 2.0374 -3.1954 -0.5147 30 1 4.0088 -0.1394 -0.0005 31 1 3.7742 -1.3874 -2.1461 32 1 3.8134 -2.9223 -1.2445 33 1 6.0297 -0.8252 -1.3692 34 1 6.0588 -2.4486 -2.1017 35 1 7.2881 -3.4963 1.9996 36 1 8.2794 -5.7854 0.6752 37 1 9.5171 -4.5089 0.5914 38 1 11.3197 -7.4063 1.9761 39 1 6.0585 -2.4532 2.0954 40 1 6.0328 -0.8280 1.3667 41 1 3.8143 -2.9237 1.2359 42 1 3.7740 -1.3899 2.1388 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326656913.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:16 Heat of formation + Delta-G solvation = -62.135493 kcal Electronic energy + Delta-G solvation = -22753.905391 eV Core-core repulsion = 19348.117873 eV Total energy + Delta-G solvation = -3405.787518 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.54386 -39.50640 -37.37359 -35.31627 -34.26228 -32.60539 -31.90785 -31.01219 -29.59442 -27.42123 -27.01742 -24.63034 -23.46411 -22.40718 -20.89525 -19.48835 -19.12087 -18.10317 -17.26677 -16.33901 -16.03318 -15.87156 -15.63060 -15.11641 -14.66131 -14.20002 -14.04002 -13.83944 -13.69315 -13.33633 -13.21374 -13.07436 -12.90084 -12.53546 -12.40574 -12.35709 -11.94845 -11.91371 -11.67652 -11.36282 -10.95972 -10.91717 -10.90820 -10.70207 -10.28645 -10.06126 -9.38627 -9.33677 -8.91457 -8.73569 -8.43620 -7.73274 -6.15367 -4.21854 2.35237 2.69844 3.17064 3.23890 3.31387 3.34555 3.89175 4.25885 4.31336 4.52888 4.65546 4.72803 4.76751 4.89209 4.94243 4.96299 5.06055 5.14362 5.20850 5.21742 5.23618 5.39544 5.48299 5.48574 5.67077 5.70720 5.78036 5.90277 5.98044 6.13818 6.25687 6.76609 7.09280 7.14053 7.51560 7.54296 7.57757 7.85815 7.89447 8.02275 8.75958 8.90141 9.31917 9.47706 10.94949 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.030467 B = 0.003253 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.812245 B = 8605.402214 C = 9042.523841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.510 3.490 3 O -0.548 6.548 4 N -0.612 5.612 5 C 0.074 3.926 6 C 0.139 3.861 7 C -0.141 4.141 8 C 0.134 3.866 9 N -0.639 5.639 10 C 0.698 3.302 11 O -0.598 6.598 12 N -0.729 5.729 13 C 0.266 3.734 14 C -0.541 4.541 15 H 0.062 0.938 16 C 0.063 3.937 17 N -0.885 5.885 18 Si 0.904 3.096 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.117 3.883 23 C -0.140 4.140 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.385 0.615 36 H 0.025 0.975 37 H 0.024 0.976 38 H 0.265 0.735 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.898 10.907 -1.993 23.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.299 3.701 3 O -0.426 6.426 4 N -0.345 5.345 5 C -0.069 4.069 6 C 0.036 3.964 7 C -0.180 4.180 8 C 0.010 3.990 9 N -0.379 5.379 10 C 0.399 3.601 11 O -0.477 6.477 12 N -0.383 5.383 13 C 0.145 3.855 14 C -0.579 4.579 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.008 4.008 23 C -0.179 4.179 24 H 0.106 0.894 25 H 0.109 0.891 26 H 0.106 0.894 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.121 0.879 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.220 0.780 36 H 0.043 0.957 37 H 0.042 0.958 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.133 10.897 -2.797 23.063 hybrid contribution 0.056 -0.282 1.402 1.431 sum -20.077 10.615 -1.395 22.753 Atomic orbital electron populations 1.21944 0.91878 1.05316 1.04084 1.20845 0.90644 0.83151 0.75487 1.90715 1.70762 1.31116 1.49958 1.48011 1.06776 1.06355 1.73407 1.21831 0.97053 0.85915 1.02139 1.21181 0.78583 1.01726 0.94926 1.22350 0.96679 1.01393 0.97580 1.21274 0.91684 0.98690 0.87354 1.47321 1.46683 1.37712 1.06196 1.16052 0.79163 0.79618 0.85262 1.90855 1.65595 1.60085 1.31194 1.45888 1.42115 1.44825 1.05504 1.18991 0.84117 0.85264 0.97167 1.21251 1.21474 1.23480 0.91711 0.91983 1.24946 0.95826 0.95560 0.97705 1.69993 1.25683 1.25902 1.30686 0.86364 0.78465 0.78198 0.83888 1.19662 1.20821 1.20802 1.21500 0.92742 0.99496 0.87056 1.22258 0.96195 1.01595 0.97900 0.89433 0.89144 0.89414 0.92340 0.90911 0.90520 0.87911 0.90657 0.91054 0.91999 0.88451 0.77983 0.95683 0.95807 0.92522 0.89635 0.91419 0.90980 0.90588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.99 8.87 36.01 0.32 -0.67 16 2 C 0.51 5.15 7.78 -10.98 -0.09 5.07 16 3 O -0.55 -7.95 16.41 5.56 0.09 -7.85 16 4 N -0.61 -5.49 2.76 -173.70 -0.48 -5.97 16 5 C 0.07 0.44 9.33 59.85 0.56 1.00 16 6 C 0.14 1.45 2.49 -67.72 -0.17 1.28 16 7 C -0.14 -1.50 5.34 -26.45 -0.14 -1.64 16 8 C 0.13 1.79 6.43 -3.71 -0.02 1.77 16 9 N -0.64 -9.94 2.97 -178.49 -0.53 -10.47 16 10 C 0.70 14.64 8.29 -86.91 -0.72 13.92 16 11 O -0.60 -15.01 15.77 5.29 0.08 -14.92 16 12 N -0.73 -15.83 5.46 -66.41 -0.36 -16.19 16 13 C 0.27 7.15 5.43 -5.19 -0.03 7.12 16 14 C -0.54 -14.73 9.28 -34.44 -0.32 -15.05 16 15 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 18 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 C 0.12 1.42 6.39 -3.71 -0.02 1.39 16 23 C -0.14 -1.43 5.34 -26.61 -0.14 -1.57 16 24 H 0.09 0.36 8.11 -51.93 -0.42 -0.07 16 25 H 0.09 0.54 8.12 -51.93 -0.42 0.11 16 26 H 0.09 0.34 7.40 -51.93 -0.38 -0.04 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.28 6.44 -51.93 -0.33 -0.05 16 29 H 0.08 0.50 6.46 -51.93 -0.34 0.16 16 30 H 0.10 1.26 6.90 -51.93 -0.36 0.90 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.78 6.73 -51.93 -0.35 0.43 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.10 1.48 6.99 -51.93 -0.36 1.12 16 35 H 0.39 7.22 5.81 -40.82 -0.24 6.98 16 36 H 0.03 0.75 8.14 -51.92 -0.42 0.32 16 37 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.09 1.04 5.65 -51.92 -0.29 0.75 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.75 7.72 -51.93 -0.40 0.35 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 337.18 15.07 5.08 5.08 Total: -1.00 -35.21 337.18 -7.67 -42.88 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -6.39 Total: 2.78 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: -0.87 Total: 14.27 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: -0.64 Total: -58.06 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: 0.17 Total: -22.78 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.21 -7.67 -42.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326656913.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.255 kcal (2) G-P(sol) polarization free energy of solvation -35.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds