Wall clock time and date at job start Tue Mar 31 2020 06:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42898 * 109.47011 * 2 1 4 4 C 1.42902 * 114.00211 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47141 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47184 * 179.97438 * 5 4 3 7 7 N 1.46493 * 109.47283 * 180.02562 * 6 5 4 8 8 N 1.40587 * 127.37882 * 274.95109 * 7 6 5 9 9 N 1.28920 * 106.81463 * 180.02562 * 8 7 6 10 10 N 1.28426 * 110.31251 * 359.72455 * 9 8 7 11 11 C 1.31472 * 110.51000 * 0.46223 * 10 9 8 12 12 N 1.38381 * 126.43828 * 179.81386 * 11 10 9 13 13 C 1.46903 * 110.99804 * 302.42414 * 12 11 10 14 14 C 1.46898 * 110.99944 * 66.37598 * 12 11 10 15 15 H 1.09007 * 109.46901 * 55.00099 * 14 12 11 16 16 C 1.52999 * 109.47295 * 295.00305 * 14 12 11 17 17 C 1.50696 * 109.47311 * 175.00125 * 14 12 11 18 18 H 1.07999 * 119.99710 * 0.02562 * 17 14 12 19 19 C 1.37872 * 120.00336 * 180.02562 * 17 14 12 20 20 N 1.31518 * 120.00186 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 120.00229 * 179.97438 * 19 17 14 22 22 H 1.48506 * 109.47032 * 90.00162 * 21 19 17 23 23 H 1.48506 * 109.47163 * 209.99995 * 21 19 17 24 24 H 1.48496 * 109.47282 * 330.00180 * 21 19 17 25 25 H 1.09005 * 109.46879 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47182 * 299.99635 * 1 2 3 27 27 H 1.09000 * 109.47390 * 60.00324 * 1 2 3 28 28 H 1.08997 * 109.47384 * 239.99875 * 2 1 3 29 29 H 1.09000 * 109.47390 * 119.99676 * 2 1 3 30 30 H 1.08997 * 109.47300 * 59.99945 * 4 3 2 31 31 H 1.08996 * 109.46876 * 299.99942 * 4 3 2 32 32 H 1.08998 * 109.47311 * 60.00265 * 5 4 3 33 33 H 1.08996 * 109.47335 * 299.99841 * 5 4 3 34 34 H 1.09000 * 109.47434 * 59.99613 * 6 5 4 35 35 H 1.09004 * 109.46934 * 300.00470 * 6 5 4 36 36 H 1.08998 * 109.46669 * 177.87868 * 13 12 11 37 37 H 1.08995 * 109.47282 * 297.88453 * 13 12 11 38 38 H 1.09005 * 109.47232 * 57.88430 * 13 12 11 39 39 H 1.09000 * 109.47233 * 180.02562 * 16 14 12 40 40 H 1.09007 * 109.46978 * 299.99747 * 16 14 12 41 41 H 1.09002 * 109.47321 * 59.99822 * 16 14 12 42 42 H 0.96993 * 120.00401 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8252 2.9385 -0.0012 6 6 5.3505 3.0594 -0.0012 7 7 5.7281 4.4748 -0.0011 8 7 5.8550 5.3243 -1.1141 9 7 6.2045 6.4803 -0.6629 10 7 6.3049 6.4476 0.6170 11 6 6.0302 5.2444 1.0700 12 7 6.0418 4.8422 2.3941 13 6 7.3578 5.0760 3.0037 14 6 4.9812 5.5132 3.1575 15 1 4.0199 5.3392 2.6740 16 6 5.2621 7.0164 3.2078 17 6 4.9456 4.9617 4.5594 18 1 5.6415 4.1901 4.8540 19 6 4.0246 5.4420 5.4660 20 7 3.1774 6.3820 5.1075 21 14 3.9799 4.7578 7.2036 22 1 4.8814 5.5558 8.0731 23 1 2.5929 4.8312 7.7290 24 1 4.4300 3.3428 7.1902 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8332 0.9768 -0.8908 31 1 3.8339 0.9766 0.8891 32 1 3.4228 3.4222 0.8888 33 1 3.4221 3.4217 -0.8911 34 1 5.7534 2.5754 -0.8909 35 1 5.7532 2.5761 0.8890 36 1 7.3282 4.7861 4.0540 37 1 8.1097 4.4824 2.4838 38 1 7.6117 6.1332 2.9256 39 1 4.4754 7.5143 3.7746 40 1 6.2234 7.1904 3.6913 41 1 5.2879 7.4154 2.1937 42 1 2.5293 6.7197 5.7452 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333659679.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:23 Heat of formation + Delta-G solvation = 79.902415 kcal Electronic energy + Delta-G solvation = -23071.164589 eV Core-core repulsion = 19703.829048 eV Total energy + Delta-G solvation = -3367.335541 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.175 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.49145 -38.27522 -37.57916 -35.67090 -33.07529 -32.42201 -30.85521 -30.60268 -28.82473 -26.52020 -25.51110 -25.30782 -22.95274 -22.84704 -21.99070 -21.50872 -19.75964 -17.30500 -16.64832 -16.49113 -16.19790 -16.11207 -15.55116 -14.89857 -14.80719 -14.41516 -13.86714 -13.65412 -13.24310 -13.02038 -12.81784 -12.47644 -12.32132 -12.11607 -11.78217 -11.64768 -11.52883 -11.39178 -11.12464 -11.04701 -10.96213 -10.84904 -10.79877 -10.46497 -10.30675 -10.13606 -10.00094 -9.70402 -9.45015 -9.02895 -8.55024 -8.04455 -6.15689 -4.23207 1.42221 2.12100 2.77963 3.22845 3.30151 3.31951 3.52605 4.17929 4.40291 4.56564 4.86409 4.89199 4.94762 5.00546 5.11339 5.16661 5.18479 5.20316 5.28623 5.35354 5.55240 5.67335 5.74030 5.76218 5.94567 5.95946 6.04334 6.14047 6.15872 6.37991 6.52244 6.71640 6.88675 7.03760 7.10305 7.26071 7.45446 7.59581 7.75788 8.12471 8.24922 8.79057 8.97968 9.42203 10.91047 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.010028 B = 0.006245 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.576736 B = 4482.641810 C = 6627.550289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.386 6.386 4 C 0.072 3.928 5 C -0.137 4.137 6 C 0.137 3.863 7 N -0.374 5.374 8 N -0.104 5.104 9 N -0.048 5.048 10 N -0.350 5.350 11 C 0.440 3.560 12 N -0.472 5.472 13 C 0.040 3.960 14 C 0.223 3.777 15 H 0.040 0.960 16 C -0.177 4.177 17 C -0.511 4.511 18 H 0.068 0.932 19 C 0.064 3.936 20 N -0.886 5.886 21 Si 0.902 3.098 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.273 1.273 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.047 0.953 38 H 0.045 0.955 39 H 0.090 0.910 40 H 0.034 0.966 41 H 0.036 0.964 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.038 -12.253 -7.883 14.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.306 6.306 4 C -0.005 4.005 5 C -0.175 4.175 6 C 0.015 3.985 7 N -0.172 5.172 8 N -0.090 5.090 9 N -0.044 5.044 10 N -0.206 5.206 11 C 0.074 3.926 12 N -0.200 5.200 13 C -0.107 4.107 14 C 0.119 3.881 15 H 0.058 0.942 16 C -0.237 4.237 17 C -0.549 4.549 18 H 0.086 0.914 19 C -0.139 4.139 20 N -0.524 5.524 21 Si 0.729 3.271 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.198 1.198 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.132 0.868 36 H 0.115 0.885 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.108 0.892 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.821 -11.554 -8.818 14.558 hybrid contribution -0.064 -0.599 1.468 1.587 sum 0.757 -12.153 -7.349 14.222 Atomic orbital electron populations 1.21747 0.93786 1.02094 1.03354 1.22450 0.95662 0.83778 0.99977 1.87915 1.20829 1.26403 1.95419 1.22258 0.81715 0.96123 1.00451 1.21837 0.93787 0.96554 1.05342 1.21690 0.95914 0.75590 1.05355 1.51524 1.48583 1.11865 1.05195 1.82438 1.22589 0.96786 1.07190 1.77869 1.09328 1.13232 1.03984 1.75106 1.25019 1.17697 1.02809 1.23693 0.92290 0.85303 0.91304 1.59825 1.08628 1.57541 0.93993 1.22343 0.86709 1.00465 1.01212 1.19509 0.86501 0.89811 0.92265 0.94207 1.22514 1.01863 0.99285 0.99997 1.20925 1.18357 1.21604 0.94043 0.91428 1.24905 0.95156 0.94854 0.98935 1.69897 1.19611 1.27506 1.35373 0.86438 0.77358 0.79368 0.83907 1.20549 1.21178 1.19761 0.91206 0.91590 0.91921 0.93578 0.93234 0.93196 0.92471 0.89213 0.90296 0.88410 0.86839 0.88459 0.93392 0.93589 0.89194 0.94654 0.94497 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.28 37.16 0.38 -0.98 16 2 C 0.06 0.57 6.66 37.16 0.25 0.82 16 3 O -0.39 -5.13 10.34 -35.23 -0.36 -5.49 16 4 C 0.07 0.80 5.94 37.16 0.22 1.02 16 5 C -0.14 -1.83 5.91 -26.73 -0.16 -1.99 16 6 C 0.14 1.76 6.51 -4.05 -0.03 1.73 16 7 N -0.37 -6.49 3.69 -61.86 -0.23 -6.72 16 8 N -0.10 -1.94 13.93 60.35 0.84 -1.10 16 9 N -0.05 -0.99 13.38 60.35 0.81 -0.19 16 10 N -0.35 -7.48 9.61 30.10 0.29 -7.19 16 11 C 0.44 8.75 6.32 -320.41 -2.03 6.73 16 12 N -0.47 -9.53 4.73 -176.43 -0.83 -10.37 16 13 C 0.04 0.73 8.70 60.07 0.52 1.25 16 14 C 0.22 5.34 2.31 -68.87 -0.16 5.18 16 15 H 0.04 1.07 8.11 -51.93 -0.42 0.65 16 16 C -0.18 -4.31 8.19 37.16 0.30 -4.00 16 17 C -0.51 -12.83 7.85 -34.44 -0.27 -13.10 16 18 H 0.07 1.64 6.78 -52.49 -0.36 1.29 16 19 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 20 N -0.89 -24.25 11.32 55.43 0.63 -23.62 16 21 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.11 1.36 8.10 -51.93 -0.42 0.94 16 36 H 0.10 1.77 6.36 -51.93 -0.33 1.44 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.87 6.50 -51.93 -0.34 0.53 16 39 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 40 H 0.03 0.82 6.52 -51.93 -0.34 0.48 16 41 H 0.04 0.89 5.78 -51.93 -0.30 0.59 16 42 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 343.94 15.07 5.18 5.18 Total: -1.00 -29.42 343.94 -6.36 -35.78 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -6.61 Total: 0.42 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -1.06 Total: -1.77 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: 1.50 Total: -49.19 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.36 Total: -5.49 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.42 -6.36 -35.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333659679.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.680 kcal (2) G-P(sol) polarization free energy of solvation -29.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds