Wall clock time and date at job start Tue Mar 31 2020 06:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21281 * 119.99961 * 2 1 4 4 N 1.34774 * 119.99741 * 179.97438 * 2 1 3 5 5 C 1.47422 * 125.65171 * 359.94939 * 4 2 1 6 6 C 1.54908 * 104.83357 * 155.91447 * 5 4 2 7 7 C 1.55156 * 101.58197 * 37.01425 * 6 5 4 8 8 H 1.08997 * 110.72273 * 82.85614 * 7 6 5 9 9 N 1.46497 * 110.87384 * 206.06517 * 7 6 5 10 10 C 1.34779 * 120.00251 * 200.05969 * 9 7 6 11 11 O 1.21587 * 119.99471 * 0.02562 * 10 9 7 12 12 N 1.34772 * 120.00195 * 179.97438 * 10 9 7 13 13 C 1.46503 * 120.00173 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47155 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47023 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47346 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99623 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00104 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99830 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99888 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46917 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46928 * 120.00035 * 20 18 16 23 23 H 1.48497 * 109.47181 * 239.99821 * 20 18 16 24 24 C 1.47031 * 125.64691 * 180.02562 * 4 2 1 25 25 H 1.08991 * 109.47098 * 240.00458 * 1 2 3 26 26 H 1.08993 * 109.46588 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46804 * 120.00235 * 1 2 3 28 28 H 1.09000 * 110.36378 * 37.07938 * 5 4 2 29 29 H 1.08998 * 110.37024 * 274.75654 * 5 4 2 30 30 H 1.08999 * 111.00895 * 278.93886 * 6 5 4 31 31 H 1.09003 * 111.00533 * 155.08158 * 6 5 4 32 32 H 0.97000 * 119.99864 * 20.05843 * 9 7 6 33 33 H 0.97000 * 119.99919 * 0.02562 * 12 10 9 34 34 H 1.08999 * 109.47373 * 300.00797 * 13 12 10 35 35 H 1.09005 * 109.46962 * 60.00391 * 13 12 10 36 36 H 1.09005 * 109.47072 * 299.99834 * 14 13 12 37 37 H 1.08991 * 109.47187 * 60.00150 * 14 13 12 38 38 H 1.08999 * 109.47146 * 300.00263 * 15 14 13 39 39 H 1.09005 * 109.47322 * 59.99938 * 15 14 13 40 40 H 0.97000 * 119.99263 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.88059 * 61.59780 * 24 4 2 42 42 H 1.08994 * 109.87878 * 300.43060 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5730 -2.5103 0.0022 6 6 2.6545 -3.4358 -0.6089 7 6 3.9549 -2.8234 -0.0248 8 1 4.1381 -3.1964 0.9829 9 7 5.0999 -3.1023 -0.8949 10 6 6.3531 -3.0273 -0.4045 11 8 6.5332 -2.7285 0.7602 12 7 7.4065 -3.2844 -1.2049 13 6 8.7687 -3.2023 -0.6720 14 6 9.7704 -3.5376 -1.7788 15 6 11.1930 -3.4525 -1.2221 16 6 12.1797 -3.7833 -2.3121 17 1 11.8273 -4.0301 -3.3026 18 6 13.5322 -3.7710 -2.0446 19 7 13.9612 -3.4699 -0.8384 20 14 14.7552 -4.1818 -3.3956 21 1 14.0226 -4.4823 -4.6518 22 1 15.6583 -3.0235 -3.6147 23 1 15.5569 -5.3655 -2.9942 24 6 3.6440 -1.3119 0.0011 25 1 -0.3633 -0.5137 0.8900 26 1 -0.3632 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 0.6734 -2.5202 -0.6132 29 1 1.3402 -2.8201 1.0209 30 1 2.6496 -3.3770 -1.6973 31 1 2.5227 -4.4648 -0.2742 32 1 4.9562 -3.3411 -1.8240 33 1 7.2628 -3.5232 -2.1340 34 1 8.9557 -2.1925 -0.3068 35 1 8.8815 -3.9118 0.1478 36 1 9.5835 -4.5474 -2.1443 37 1 9.6575 -2.8279 -2.5983 38 1 11.3801 -2.4429 -0.8562 39 1 11.3057 -4.1625 -0.4027 40 1 14.9128 -3.4616 -0.6502 41 1 4.0605 -0.8630 0.9028 42 1 4.0643 -0.8320 -0.8826 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334646120.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:03 Heat of formation + Delta-G solvation = -78.376974 kcal Electronic energy + Delta-G solvation = -21521.171480 eV Core-core repulsion = 18114.679679 eV Total energy + Delta-G solvation = -3406.491801 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.61821 -39.64755 -37.78074 -35.47095 -34.36301 -33.30230 -31.67968 -30.83107 -30.26536 -28.26961 -26.48836 -24.03363 -23.07992 -21.54917 -20.88463 -20.43399 -19.69429 -18.15873 -17.45183 -17.03733 -16.44759 -15.88117 -15.69453 -15.39007 -14.75984 -14.50916 -14.31271 -14.06287 -14.01946 -13.71830 -13.21424 -13.02838 -12.84621 -12.45196 -12.35412 -12.27617 -12.09162 -11.80348 -11.67305 -11.30976 -10.92241 -10.73254 -10.56980 -10.24539 -10.16274 -9.86655 -9.45444 -9.36019 -9.11174 -9.03454 -8.67559 -8.37364 -6.01774 -4.04827 2.29942 2.42887 2.85802 3.26588 3.29933 3.37423 3.40819 3.92899 4.04362 4.29138 4.44674 4.47028 4.54395 4.75837 4.85048 4.85773 4.93308 5.01137 5.28862 5.34053 5.38525 5.41120 5.58245 5.67858 5.71718 5.80777 5.85911 6.17626 6.33612 6.50178 6.61774 6.76282 7.00429 7.02017 7.12153 7.64220 7.76724 7.82026 7.97260 8.07565 8.37995 8.68079 9.02127 9.59363 11.09537 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.041502 B = 0.002245 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.502388 B =12469.022239 C =12661.561480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.523 3.477 3 O -0.543 6.543 4 N -0.621 5.621 5 C 0.102 3.898 6 C -0.140 4.140 7 C 0.158 3.842 8 H 0.106 0.894 9 N -0.743 5.743 10 C 0.700 3.300 11 O -0.589 6.589 12 N -0.740 5.740 13 C 0.134 3.866 14 C -0.120 4.120 15 C 0.023 3.977 16 C -0.521 4.521 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.093 3.907 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.397 0.603 33 H 0.394 0.606 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.020 0.980 39 H 0.019 0.981 40 H 0.261 0.739 41 H 0.077 0.923 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.207 -1.181 -0.941 30.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.312 3.688 3 O -0.419 6.419 4 N -0.357 5.357 5 C -0.022 4.022 6 C -0.179 4.179 7 C 0.050 3.950 8 H 0.124 0.876 9 N -0.399 5.399 10 C 0.400 3.600 11 O -0.467 6.467 12 N -0.394 5.394 13 C 0.011 3.989 14 C -0.158 4.158 15 C -0.015 4.015 16 C -0.560 4.560 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.532 5.532 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.031 4.031 25 H 0.106 0.894 26 H 0.111 0.889 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.231 0.769 33 H 0.227 0.773 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.070 0.930 41 H 0.095 0.905 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -29.548 -0.231 0.265 29.550 hybrid contribution 0.659 -0.498 -1.585 1.787 sum -28.889 -0.729 -1.320 28.929 Atomic orbital electron populations 1.21896 0.91235 1.05528 1.04127 1.20547 0.90392 0.81991 0.75842 1.90762 1.70833 1.30661 1.49681 1.48519 1.07346 1.05922 1.73923 1.22332 0.96741 0.81576 1.01503 1.23096 0.93361 0.99833 1.01590 1.21677 0.84362 0.93062 0.95861 0.87606 1.45036 1.04257 1.76457 1.14135 1.16031 0.80403 0.78330 0.85229 1.90937 1.84709 1.55042 1.15977 1.45390 1.06125 1.74298 1.13543 1.21537 0.77841 1.01798 0.97699 1.21890 0.96975 1.00387 0.96573 1.19038 0.88182 0.97696 0.96536 1.21237 0.91136 1.46906 0.96704 0.92603 1.25042 0.98638 0.95374 0.95512 1.69982 1.14533 1.48827 1.19882 0.86522 0.81270 0.77998 0.82099 1.19784 1.21007 1.21012 1.22457 0.80123 0.97160 1.03407 0.89376 0.88893 0.89450 0.89914 0.90582 0.89781 0.88695 0.76878 0.77264 0.91880 0.91871 0.92763 0.92754 0.96211 0.96226 0.92978 0.90492 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 9.33 36.01 0.34 -0.53 16 2 C 0.52 5.31 7.96 -10.98 -0.09 5.22 16 3 O -0.54 -8.34 17.41 5.56 0.10 -8.24 16 4 N -0.62 -5.32 3.33 -170.52 -0.57 -5.89 16 5 C 0.10 0.44 6.69 -2.53 -0.02 0.42 16 6 C -0.14 -0.62 6.70 -24.58 -0.16 -0.78 16 7 C 0.16 1.35 3.23 -66.10 -0.21 1.14 16 8 H 0.11 1.06 7.69 -51.93 -0.40 0.67 16 9 N -0.74 -7.14 5.14 -56.89 -0.29 -7.44 16 10 C 0.70 10.16 8.56 -86.92 -0.74 9.42 16 11 O -0.59 -11.18 16.07 5.29 0.08 -11.09 16 12 N -0.74 -10.35 5.56 -65.22 -0.36 -10.71 16 13 C 0.13 2.37 5.67 -4.04 -0.02 2.35 16 14 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 15 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 16 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -26.88 13.29 55.43 0.74 -26.15 16 20 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 21 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.09 0.99 6.62 -3.06 -0.02 0.97 16 25 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.09 0.50 8.12 -51.93 -0.42 0.08 16 27 H 0.09 0.26 7.85 -51.93 -0.41 -0.14 16 28 H 0.08 0.18 7.48 -51.93 -0.39 -0.21 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.31 8.01 -51.93 -0.42 -0.11 16 31 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.40 2.62 8.54 -40.82 -0.35 2.27 16 33 H 0.39 4.29 8.49 -40.82 -0.35 3.94 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.07 0.88 8.03 -51.93 -0.42 0.46 16 LS Contribution 352.90 15.07 5.32 5.32 Total: -1.00 -36.95 352.90 -8.55 -45.49 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -6.91 Total: -0.60 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -1.62 Total: 2.80 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -0.49 Total: -50.18 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: 0.18 Total: -19.33 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.95 -8.55 -45.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334646120.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.885 kcal (2) G-P(sol) polarization free energy of solvation -36.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds