Wall clock time and date at job start Tue Mar 31 2020 06:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42908 * 113.99648 * 2 1 4 4 C 1.52997 * 109.46931 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47602 * 64.99954 * 4 3 2 6 6 C 1.36936 * 119.99830 * 264.42278 * 5 4 3 7 7 H 1.08007 * 119.99565 * 146.02253 * 6 5 4 8 8 C 1.38809 * 120.00175 * 326.02528 * 6 5 4 9 9 N 1.31611 * 120.00182 * 337.76248 * 8 6 5 10 10 Si 1.86807 * 119.99788 * 157.76758 * 8 6 5 11 11 H 1.48496 * 109.47147 * 90.00095 * 10 8 6 12 12 H 1.48500 * 109.46900 * 209.99738 * 10 8 6 13 13 H 1.48494 * 109.47130 * 329.99847 * 10 8 6 14 14 C 1.46501 * 120.00083 * 84.42111 * 5 4 3 15 15 C 1.50693 * 109.47195 * 90.00052 * 14 5 4 16 16 C 1.35314 * 126.12895 * 269.97887 * 15 14 5 17 17 C 1.50701 * 126.03895 * 0.02562 * 16 15 14 18 18 C 1.39873 * 107.92241 * 180.28461 * 16 15 14 19 19 N 1.30842 * 108.19876 * 359.55323 * 18 16 15 20 20 N 1.34953 * 126.12533 * 90.00049 * 15 14 5 21 21 C 1.46501 * 126.03778 * 359.96200 * 20 15 14 22 22 O 1.42897 * 109.47006 * 89.99803 * 21 20 15 23 23 C 1.42906 * 113.99739 * 180.02562 * 22 21 20 24 24 H 1.08999 * 109.47745 * 59.99773 * 1 2 3 25 25 H 1.08998 * 109.46958 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47170 * 299.99714 * 1 2 3 27 27 H 1.08999 * 109.47020 * 60.00365 * 3 2 1 28 28 H 1.08998 * 109.47054 * 300.00314 * 3 2 1 29 29 H 1.09005 * 109.47388 * 305.00190 * 4 3 2 30 30 H 1.09005 * 109.47431 * 185.00223 * 4 3 2 31 31 H 0.96998 * 120.00388 * 179.97438 * 9 8 6 32 32 H 1.09004 * 109.46700 * 330.00374 * 14 5 4 33 33 H 1.08997 * 109.47094 * 210.00915 * 14 5 4 34 34 H 1.09003 * 109.47063 * 90.00323 * 17 16 15 35 35 H 1.08999 * 109.47066 * 330.00064 * 17 16 15 36 36 H 1.09006 * 109.46921 * 209.99942 * 17 16 15 37 37 H 1.07999 * 125.90123 * 179.73550 * 18 16 15 38 38 H 1.08996 * 109.46875 * 210.00237 * 21 20 15 39 39 H 1.08995 * 109.46789 * 329.99634 * 21 20 15 40 40 H 1.08996 * 109.46826 * 179.97438 * 23 22 21 41 41 H 1.08996 * 109.46690 * 300.00004 * 23 22 21 42 42 H 1.09007 * 109.46868 * 59.99926 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5353 1.1848 -0.0006 5 7 3.9757 0.5646 -1.2527 6 6 4.2068 -0.7841 -1.3044 7 1 3.9931 -1.3343 -2.2089 8 6 4.7157 -1.4442 -0.1943 9 7 5.3759 -0.7727 0.7252 10 14 4.4636 -3.2855 -0.0057 11 1 5.5935 -4.0077 -0.6436 12 1 4.4063 -3.6320 1.4372 13 1 3.1908 -3.6805 -0.6606 14 6 4.1686 1.3872 -2.4495 15 6 5.5895 1.8874 -2.4914 16 6 6.0455 3.0411 -1.9509 17 6 5.2216 4.0543 -1.1989 18 6 7.4155 3.1299 -2.2186 19 7 7.7712 2.0629 -2.8873 20 7 6.6351 1.2652 -3.0752 21 6 6.5901 -0.0180 -3.7806 22 8 6.3140 0.2085 -5.1642 23 6 6.2477 -0.9855 -5.9467 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6885 1.8464 0.8900 28 1 1.6884 1.8465 -0.8899 29 1 3.8514 0.5683 0.8409 30 1 3.9784 2.1767 0.0890 31 1 5.7312 -1.2338 1.5011 32 1 3.4854 2.2360 -2.4209 33 1 3.9676 0.7888 -3.3380 34 1 5.2223 3.8074 -0.1372 35 1 4.1984 4.0413 -1.5743 36 1 5.6482 5.0473 -1.3412 37 1 8.0677 3.9379 -1.9218 38 1 7.5513 -0.5220 -3.6796 39 1 5.8061 -0.6414 -3.3509 40 1 6.0343 -0.7286 -6.9842 41 1 7.2016 -1.5099 -5.8906 42 1 5.4563 -1.6287 -5.5617 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335544061.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:31 Heat of formation + Delta-G solvation = 16.693017 kcal Electronic energy + Delta-G solvation = -23934.043073 eV Core-core repulsion = 20531.673816 eV Total energy + Delta-G solvation = -3402.369257 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.50246 -37.48782 -37.24782 -35.40730 -32.39588 -31.96332 -30.62477 -29.03003 -27.54306 -26.29396 -25.70296 -25.04062 -24.12493 -23.02687 -20.74948 -20.04487 -18.60927 -16.75131 -16.47769 -16.25489 -15.70454 -15.43559 -15.13319 -14.74481 -14.13943 -14.12662 -13.96011 -13.65224 -13.20514 -13.03070 -12.78518 -12.41405 -12.22440 -12.01482 -11.80457 -11.57132 -11.34196 -11.25767 -10.95423 -10.87628 -10.72906 -10.62541 -10.25879 -10.04173 -9.84286 -9.77011 -9.50165 -8.88455 -8.63149 -8.49157 -7.50533 -6.70384 -5.82772 -3.35287 2.58375 3.02864 3.33899 3.43487 3.47815 3.56589 4.36164 4.48301 4.64939 5.16523 5.30507 5.37608 5.43622 5.47073 5.61155 5.65019 5.71911 5.73311 5.76646 5.78297 5.92140 5.95788 6.04346 6.11810 6.17878 6.23322 6.25493 6.42596 6.50425 6.66243 6.70355 6.82320 7.03232 7.19525 7.45325 7.64721 7.72356 7.87881 8.01909 8.45264 8.51328 9.10322 9.75097 10.29398 11.18577 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.012558 B = 0.007521 C = 0.006077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.157162 B = 3721.941068 C = 4606.310618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.046 3.954 4 C 0.140 3.860 5 N -0.560 5.560 6 C -0.252 4.252 7 H 0.058 0.942 8 C 0.021 3.979 9 N -0.880 5.880 10 Si 0.896 3.104 11 H -0.290 1.290 12 H -0.289 1.289 13 H -0.276 1.276 14 C 0.193 3.807 15 C 0.120 3.880 16 C -0.262 4.262 17 C -0.060 4.060 18 C 0.051 3.949 19 N -0.314 5.314 20 N -0.354 5.354 21 C 0.310 3.690 22 O -0.413 6.413 23 C 0.043 3.957 24 H 0.029 0.971 25 H 0.074 0.926 26 H 0.026 0.974 27 H 0.027 0.973 28 H 0.028 0.972 29 H 0.108 0.892 30 H 0.048 0.952 31 H 0.255 0.745 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.171 0.829 38 H 0.073 0.927 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.042 0.958 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.724 4.285 -5.452 7.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C -0.033 4.033 4 C 0.014 3.986 5 N -0.278 5.278 6 C -0.381 4.381 7 H 0.075 0.925 8 C -0.180 4.180 9 N -0.521 5.521 10 Si 0.725 3.275 11 H -0.217 1.217 12 H -0.215 1.215 13 H -0.201 1.201 14 C 0.065 3.935 15 C -0.010 4.010 16 C -0.274 4.274 17 C -0.118 4.118 18 C -0.136 4.136 19 N -0.134 5.134 20 N -0.139 5.139 21 C 0.150 3.850 22 O -0.331 6.331 23 C -0.054 4.054 24 H 0.047 0.953 25 H 0.092 0.908 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.125 0.875 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.188 0.812 38 H 0.091 0.909 39 H 0.124 0.876 40 H 0.105 0.895 41 H 0.060 0.940 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.605 3.451 -6.006 7.401 hybrid contribution -0.771 -0.576 0.737 1.213 sum -3.376 2.874 -5.269 6.886 Atomic orbital electron populations 1.22629 0.84177 1.01467 0.98466 1.88198 1.16628 1.27841 1.94850 1.23417 0.98808 0.84067 0.97020 1.21158 0.87204 0.97616 0.92632 1.43821 1.74290 1.03754 1.05957 1.18830 1.37088 0.82303 0.99920 0.92456 1.25025 0.96347 0.97694 0.98910 1.69977 1.34607 1.35421 1.12140 0.86432 0.78051 0.85741 0.77278 1.21728 1.21489 1.20128 1.19802 0.86417 0.94700 0.92622 1.22497 0.93739 0.91189 0.93538 1.19670 0.94590 0.99803 1.13292 1.19960 0.97692 0.95414 0.98724 1.23531 0.95080 0.96601 0.98406 1.77154 1.08685 1.04459 1.23139 1.47984 1.05672 1.17961 1.42321 1.22317 1.02371 0.81322 0.78990 1.87796 1.92772 1.32128 1.20428 1.22626 1.00397 0.87014 0.95402 0.95251 0.90763 0.95499 0.95485 0.95389 0.87462 0.93420 0.93511 0.91837 0.92609 0.92490 0.92864 0.93065 0.81197 0.90866 0.87610 0.89547 0.93962 0.93404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.59 16 2 O -0.36 -7.53 10.44 -35.23 -0.37 -7.89 16 3 C 0.05 0.88 6.28 37.16 0.23 1.12 16 4 C 0.14 3.12 5.63 -4.04 -0.02 3.10 16 5 N -0.56 -12.99 2.39 -174.61 -0.42 -13.40 16 6 C -0.25 -6.42 8.10 -15.06 -0.12 -6.54 16 7 H 0.06 1.46 7.65 -52.48 -0.40 1.06 16 8 C 0.02 0.56 4.92 -17.44 -0.09 0.48 16 9 N -0.88 -24.58 11.35 55.49 0.63 -23.95 16 10 Si 0.90 21.30 29.61 -169.99 -5.03 16.27 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 C 0.19 3.98 5.49 -5.20 -0.03 3.95 16 15 C 0.12 2.56 6.51 -82.27 -0.54 2.03 16 16 C -0.26 -5.17 6.10 -105.05 -0.64 -5.81 16 17 C -0.06 -0.96 9.26 36.01 0.33 -0.63 16 18 C 0.05 0.98 11.96 -17.36 -0.21 0.78 16 19 N -0.31 -6.86 12.58 30.63 0.39 -6.47 16 20 N -0.35 -7.75 3.88 -61.90 -0.24 -7.99 16 21 C 0.31 6.06 6.87 59.85 0.41 6.47 16 22 O -0.41 -7.37 10.93 -35.23 -0.39 -7.75 16 23 C 0.04 0.55 11.01 101.05 1.11 1.66 16 24 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.03 0.50 8.11 -51.93 -0.42 0.08 16 29 H 0.11 2.80 5.35 -51.93 -0.28 2.52 16 30 H 0.05 1.00 6.18 -51.93 -0.32 0.68 16 31 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.06 1.17 7.05 -51.93 -0.37 0.81 16 33 H 0.06 1.14 7.62 -51.93 -0.40 0.75 16 34 H 0.06 0.94 7.24 -51.93 -0.38 0.57 16 35 H 0.05 0.80 7.15 -51.93 -0.37 0.43 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.17 2.63 8.06 -52.49 -0.42 2.21 16 38 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.11 2.16 6.13 -51.93 -0.32 1.84 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 347.76 15.07 5.24 5.24 Total: -1.00 -31.56 347.76 -5.24 -36.80 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -6.61 Total: 0.97 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 1.56 Total: 8.19 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: 0.36 Total: -51.81 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.75 Total: -15.65 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.56 -5.24 -36.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335544061.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.492 kcal (2) G-P(sol) polarization free energy of solvation -31.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds