Wall clock time and date at job start Tue Mar 31 2020 06:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34479 * 126.16160 * 2 1 4 4 C 1.30260 * 108.70087 * 180.02562 * 3 2 1 5 5 O 1.33970 * 108.75706 * 359.73392 * 4 3 2 6 6 C 1.34325 * 126.16859 * 180.02562 * 2 1 3 7 7 C 1.50700 * 126.44263 * 359.97438 * 6 2 1 8 8 N 1.46896 * 109.47209 * 90.00063 * 7 6 2 9 9 C 1.46895 * 111.00108 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.47221 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.47002 * 304.99874 * 10 9 8 12 12 O 1.42895 * 109.47000 * 64.99905 * 10 9 8 13 13 C 1.52997 * 109.47127 * 185.00300 * 10 9 8 14 14 N 1.46896 * 109.47114 * 179.97438 * 13 10 9 15 15 C 1.46896 * 111.00256 * 293.95380 * 14 13 10 16 16 C 1.46909 * 111.00113 * 169.99735 * 14 13 10 17 17 C 1.50695 * 109.47163 * 190.00161 * 16 14 13 18 18 H 1.08001 * 119.99957 * 0.02562 * 17 16 14 19 19 C 1.37878 * 119.99878 * 180.02562 * 17 16 14 20 20 N 1.31508 * 119.99861 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99883 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47068 * 60.00137 * 21 19 17 23 23 H 1.48499 * 109.47135 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47326 * 300.00030 * 21 19 17 25 25 H 1.09004 * 109.46831 * 269.99717 * 1 2 3 26 26 H 1.08995 * 109.47505 * 30.00033 * 1 2 3 27 27 H 1.09003 * 109.46764 * 150.00311 * 1 2 3 28 28 H 1.08004 * 125.62111 * 180.02562 * 4 3 2 29 29 H 1.09001 * 109.47187 * 329.99612 * 7 6 2 30 30 H 1.09003 * 109.47043 * 209.99873 * 7 6 2 31 31 H 1.00910 * 111.00029 * 56.04403 * 8 7 6 32 32 H 1.08997 * 109.47158 * 59.99752 * 9 8 7 33 33 H 1.09004 * 109.47713 * 299.99926 * 9 8 7 34 34 H 0.96696 * 113.99976 * 60.00990 * 12 10 9 35 35 H 1.09001 * 109.47289 * 299.99953 * 13 10 9 36 36 H 1.09004 * 109.47261 * 59.99697 * 13 10 9 37 37 H 1.08999 * 109.47174 * 60.00032 * 15 14 13 38 38 H 1.08998 * 109.47389 * 179.97438 * 15 14 13 39 39 H 1.09008 * 109.47155 * 299.99883 * 15 14 13 40 40 H 1.08999 * 109.46856 * 310.00530 * 16 14 13 41 41 H 1.09001 * 109.46406 * 70.00169 * 16 14 13 42 42 H 0.97000 * 119.99813 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0857 0.0000 4 6 3.5431 0.6949 -0.0006 5 8 3.5734 -0.6445 0.0050 6 6 2.2997 -1.0844 -0.0005 7 6 1.8494 -2.5225 -0.0006 8 7 1.7025 -2.9896 -1.3856 9 6 1.2643 -4.3910 -1.4249 10 6 1.1235 -4.8408 -2.8805 11 1 0.4539 -4.1611 -3.4077 12 8 2.4067 -4.8282 -3.5092 13 6 0.5485 -6.2580 -2.9231 14 7 0.4128 -6.6895 -4.3207 15 6 -0.5927 -5.8832 -5.0254 16 6 0.0904 -8.1206 -4.4009 17 6 0.2003 -8.5808 -5.8316 18 1 0.4818 -7.8805 -6.6040 19 6 -0.0586 -9.8960 -6.1545 20 7 -0.4019 -10.7487 -5.2140 21 14 0.0769 -10.4664 -7.9282 22 1 1.4619 -10.2433 -8.4155 23 1 -0.2488 -11.9130 -8.0092 24 1 -0.8740 -9.6965 -8.7698 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8899 -0.5138 27 1 -0.3633 -0.8901 -0.5138 28 1 4.4066 1.3436 -0.0003 29 1 0.8917 -2.6034 0.5136 30 1 2.5903 -3.1353 0.5129 31 1 2.5603 -2.8646 -1.9022 32 1 0.3026 -4.4853 -0.9204 33 1 2.0014 -5.0166 -0.9214 34 1 3.0548 -5.4118 -3.0917 35 1 1.2180 -6.9377 -2.3960 36 1 -0.4303 -6.2676 -2.4435 37 1 -0.2933 -4.8352 -5.0108 38 1 -0.6728 -6.2234 -6.0578 39 1 -1.5579 -5.9923 -4.5306 40 1 0.7884 -8.6854 -3.7828 41 1 -0.9262 -8.2845 -4.0434 42 1 -0.5837 -11.6740 -5.4411 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338568221.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:35 Heat of formation + Delta-G solvation = -23.390991 kcal Electronic energy + Delta-G solvation = -21861.966654 eV Core-core repulsion = 18457.859224 eV Total energy + Delta-G solvation = -3404.107430 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.59012 -38.43873 -36.31263 -35.42764 -35.12471 -32.54153 -32.12592 -30.02055 -28.25394 -27.07344 -26.21246 -24.85326 -23.23843 -22.34770 -21.43133 -20.96448 -20.16853 -17.51845 -16.97717 -16.68468 -16.35689 -16.05753 -15.38626 -15.17343 -14.81914 -14.69123 -14.17141 -14.11487 -13.56561 -13.49232 -13.25885 -13.04373 -12.75237 -12.52051 -12.29076 -12.05210 -11.89295 -11.35299 -11.25794 -11.13873 -10.87969 -10.79801 -10.76105 -10.66671 -10.30663 -10.03782 -9.66506 -9.16846 -9.01924 -8.69737 -8.43526 -7.20445 -6.02928 -4.03902 1.15191 2.39654 2.47309 3.34333 3.37815 3.41483 3.84267 3.95136 4.40570 4.42839 4.60086 4.61729 4.78017 4.91944 5.03352 5.11694 5.25852 5.33796 5.36455 5.36821 5.45422 5.53397 5.58341 5.69555 5.70787 5.81433 6.04586 6.11377 6.20133 6.29971 6.38456 6.61178 6.78709 7.05279 7.26207 7.32287 7.44992 7.79695 7.93302 8.09486 8.20008 8.55153 9.03938 9.60307 11.08026 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.042524 B = 0.002497 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.294170 B =11211.746856 C =11287.023447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.007 3.993 3 N -0.488 5.488 4 C 0.171 3.829 5 O -0.205 6.205 6 C -0.047 4.047 7 C 0.146 3.854 8 N -0.680 5.680 9 C 0.027 3.973 10 C 0.114 3.886 11 H 0.104 0.896 12 O -0.546 6.546 13 C 0.025 3.975 14 N -0.530 5.530 15 C 0.036 3.964 16 C 0.193 3.807 17 C -0.506 4.506 18 H 0.063 0.937 19 C 0.054 3.946 20 N -0.901 5.901 21 Si 0.899 3.101 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.249 0.751 29 H 0.105 0.895 30 H 0.049 0.951 31 H 0.353 0.647 32 H 0.083 0.917 33 H 0.036 0.964 34 H 0.368 0.632 35 H 0.068 0.932 36 H 0.030 0.970 37 H 0.048 0.952 38 H 0.074 0.926 39 H 0.008 0.992 40 H 0.028 0.972 41 H -0.011 1.011 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.992 18.902 13.686 23.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.114 4.114 3 N -0.218 5.218 4 C -0.056 4.056 5 O -0.091 6.091 6 C -0.100 4.100 7 C 0.017 3.983 8 N -0.313 5.313 9 C -0.102 4.102 10 C 0.054 3.946 11 H 0.122 0.878 12 O -0.350 6.350 13 C -0.105 4.105 14 N -0.254 5.254 15 C -0.112 4.112 16 C 0.068 3.932 17 C -0.544 4.544 18 H 0.082 0.918 19 C -0.147 4.147 20 N -0.541 5.541 21 Si 0.727 3.273 22 H -0.201 1.201 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.265 0.735 29 H 0.123 0.877 30 H 0.067 0.933 31 H 0.172 0.828 32 H 0.101 0.899 33 H 0.055 0.945 34 H 0.214 0.786 35 H 0.087 0.913 36 H 0.048 0.952 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.027 0.973 40 H 0.046 0.954 41 H 0.007 0.993 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.301 20.031 13.016 24.273 hybrid contribution 0.683 -1.975 0.232 2.102 sum 4.984 18.056 13.248 22.943 Atomic orbital electron populations 1.20163 0.86338 1.04002 1.02601 1.21522 0.98087 0.87308 1.04448 1.70375 1.01451 1.31896 1.18053 1.27999 0.97599 0.79284 1.00691 1.84421 1.30290 1.24728 1.69684 1.23036 0.80650 0.97770 1.08581 1.20273 1.00863 0.85455 0.91699 1.60464 1.39141 1.20481 1.11214 1.22748 1.01044 0.87420 0.99014 1.21980 0.85986 0.96364 0.90291 0.87786 1.86609 1.21412 1.67937 1.58999 1.22695 0.99375 0.95661 0.92746 1.62016 1.47072 1.06579 1.09696 1.22252 0.91984 0.96502 1.00477 1.19740 0.94462 0.81169 0.97842 1.21133 1.45631 0.94500 0.93179 0.91836 1.24994 0.95416 0.96696 0.97581 1.69947 1.47435 1.04148 1.32528 0.86545 0.78664 0.77351 0.84763 1.20134 1.21394 1.20259 0.90989 0.90644 0.89839 0.73535 0.87734 0.93307 0.82794 0.89895 0.94530 0.78618 0.91310 0.95223 0.93358 0.90720 0.97309 0.95441 0.99293 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.05 36.00 0.36 -0.26 16 2 C 0.01 0.07 7.11 -82.81 -0.59 -0.52 16 3 N -0.49 -5.49 11.29 -11.18 -0.13 -5.62 16 4 C 0.17 1.46 13.23 52.10 0.69 2.15 16 5 O -0.21 -2.08 10.78 5.36 0.06 -2.02 16 6 C -0.05 -0.48 6.90 -35.69 -0.25 -0.73 16 7 C 0.15 1.26 5.84 -4.98 -0.03 1.23 16 8 N -0.68 -6.90 6.49 -115.06 -0.75 -7.65 16 9 C 0.03 0.28 5.36 -3.82 -0.02 0.26 16 10 C 0.11 1.55 3.08 -26.73 -0.08 1.47 16 11 H 0.10 1.55 6.55 -51.93 -0.34 1.21 16 12 O -0.55 -8.05 12.72 -35.23 -0.45 -8.50 16 13 C 0.03 0.42 4.62 -3.83 -0.02 0.40 16 14 N -0.53 -11.34 4.62 -244.37 -1.13 -12.47 16 15 C 0.04 0.72 9.14 60.06 0.55 1.27 16 16 C 0.19 5.02 4.72 -4.97 -0.02 4.99 16 17 C -0.51 -14.31 8.46 -34.44 -0.29 -14.60 16 18 H 0.06 1.79 7.12 -52.49 -0.37 1.42 16 19 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 21 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 0.67 7.79 -51.93 -0.40 0.27 16 28 H 0.25 0.84 8.06 -52.48 -0.42 0.42 16 29 H 0.10 0.76 7.80 -51.93 -0.40 0.36 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.35 3.88 8.28 -39.29 -0.33 3.55 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.37 4.38 9.04 45.56 0.41 4.79 16 35 H 0.07 1.12 7.93 -51.93 -0.41 0.71 16 36 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 37 H 0.05 0.84 6.47 -51.93 -0.34 0.51 16 38 H 0.07 1.60 6.76 -51.93 -0.35 1.25 16 39 H 0.01 0.16 8.14 -51.92 -0.42 -0.26 16 40 H 0.03 0.76 7.93 -51.93 -0.41 0.34 16 41 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 351.15 15.07 5.29 5.29 Total: -1.00 -33.46 351.15 -7.07 -40.53 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -5.89 Total: 2.60 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 0.20 Total: -2.88 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -1.27 Total: -51.78 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -0.39 Total: -10.52 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.46 -7.07 -40.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338568221.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.140 kcal (2) G-P(sol) polarization free energy of solvation -33.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds