Wall clock time and date at job start Tue Mar 31 2020 06:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99892 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 120.00241 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.47135 * 90.00125 * 8 6 4 10 10 H 1.48503 * 109.47215 * 210.00315 * 8 6 4 11 11 H 1.48508 * 109.46958 * 330.00276 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.53000 * 109.47114 * 293.94896 * 12 2 1 14 14 H 1.09000 * 109.46550 * 60.00064 * 13 12 2 15 15 O 1.42901 * 109.46928 * 300.00575 * 13 12 2 16 16 C 1.52996 * 109.47000 * 180.02562 * 13 12 2 17 17 N 1.46899 * 109.46798 * 185.00066 * 16 13 12 18 18 C 1.46901 * 111.00076 * 179.97438 * 17 16 13 19 19 C 1.52997 * 109.47380 * 180.02562 * 18 17 16 20 20 C 1.50698 * 109.47078 * 180.02562 * 19 18 17 21 21 C 1.41384 * 126.80411 * 124.71068 * 20 19 18 22 22 C 1.35451 * 103.98462 * 179.88521 * 21 20 19 23 23 O 1.34041 * 106.44834 * 0.36840 * 22 21 20 24 24 N 1.20918 * 111.56613 * 359.74771 * 23 22 21 25 25 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 26 26 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 28 28 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 29 29 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 30 30 H 0.97002 * 119.99998 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 32 32 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 33 33 H 0.96697 * 113.99735 * 299.99403 * 15 13 12 34 34 H 1.08995 * 109.47058 * 304.99907 * 16 13 12 35 35 H 1.08998 * 109.46953 * 65.00454 * 16 13 12 36 36 H 1.00903 * 111.00138 * 56.05087 * 17 16 13 37 37 H 1.09005 * 109.47140 * 300.00367 * 18 17 16 38 38 H 1.09001 * 109.46992 * 59.99753 * 18 17 16 39 39 H 1.09005 * 109.47126 * 300.00183 * 19 18 17 40 40 H 1.09001 * 109.47417 * 59.99821 * 19 18 17 41 41 H 1.08000 * 128.00307 * 0.02562 * 21 20 19 42 42 H 1.08000 * 126.77289 * 180.09776 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 1.7143 3.9390 2.6618 8 14 2.9998 4.2763 0.2309 9 1 2.0631 4.9799 -0.6817 10 1 3.8862 5.2680 0.8913 11 1 3.8238 3.3176 -0.5485 12 6 1.9954 -0.7660 -1.1377 13 6 1.6315 -2.2426 -0.9704 14 1 0.5472 -2.3474 -0.9323 15 8 2.2010 -2.7391 0.2426 16 6 2.1803 -3.0404 -2.1549 17 7 1.7299 -4.4352 -2.0566 18 6 2.2384 -5.2331 -3.1803 19 6 1.7491 -6.6763 -3.0438 20 6 2.2713 -7.4949 -4.1962 21 6 3.0269 -8.6871 -4.1145 22 6 3.2429 -9.0270 -5.4078 23 8 2.6533 -8.0811 -6.1524 24 7 2.1207 -7.2415 -5.4642 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.0797 1.3445 -0.1083 29 1 1.5610 1.9274 -0.8309 30 1 1.9882 4.8554 2.8235 31 1 1.5611 -0.3871 -2.0628 32 1 3.0797 -0.6610 -1.1757 33 1 3.1653 -2.6770 0.2786 34 1 1.8160 -2.6058 -3.0857 35 1 3.2698 -3.0086 -2.1409 36 1 0.7237 -4.4873 -2.0027 37 1 1.8742 -4.8135 -4.1181 38 1 3.3283 -5.2165 -3.1739 39 1 2.1129 -7.0962 -2.1059 40 1 0.6592 -6.6926 -3.0504 41 1 3.3540 -9.2075 -3.2265 42 1 3.7869 -9.8877 -5.7679 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353301698.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:46 Heat of formation + Delta-G solvation = 19.528933 kcal Electronic energy + Delta-G solvation = -21469.711083 eV Core-core repulsion = 18067.464800 eV Total energy + Delta-G solvation = -3402.246283 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.30672 -38.43930 -36.80340 -35.54377 -34.44219 -32.45494 -32.18322 -30.89511 -29.09823 -27.57632 -25.91888 -23.89311 -23.52415 -22.75384 -21.40198 -20.82327 -20.09801 -18.16954 -17.90141 -16.94440 -16.60685 -15.84760 -15.57763 -15.30948 -14.96581 -14.68443 -14.21824 -14.16947 -13.87007 -13.73927 -13.40213 -12.86297 -12.69921 -12.38765 -12.25498 -12.03770 -11.86092 -11.60502 -11.38303 -11.22205 -10.99048 -10.72345 -10.68282 -10.40744 -10.23721 -10.02700 -9.89996 -9.51755 -9.20826 -8.61440 -8.56795 -7.33538 -6.03645 -4.00713 1.11734 1.83991 2.88513 3.27782 3.35477 3.36948 3.62644 3.90575 4.27093 4.42345 4.61356 4.70732 4.73844 4.82056 4.86677 5.04681 5.08514 5.10927 5.24214 5.27215 5.31299 5.45434 5.54380 5.56944 5.60463 5.64070 5.77350 5.94107 6.10724 6.22020 6.31995 6.69937 6.73313 6.83966 6.99729 7.13066 7.60109 7.89213 7.90555 8.00646 8.14677 8.67730 9.06212 9.57870 11.09541 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.043106 B = 0.002278 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.403536 B =12289.593185 C =12572.905942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.519 5.519 3 C 0.162 3.838 4 C -0.507 4.507 5 H 0.082 0.918 6 C 0.067 3.933 7 N -0.900 5.900 8 Si 0.876 3.124 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.268 1.268 12 C 0.020 3.980 13 C 0.118 3.882 14 H 0.093 0.907 15 O -0.534 6.534 16 C 0.027 3.973 17 N -0.678 5.678 18 C 0.064 3.936 19 C -0.040 4.040 20 C 0.020 3.980 21 C -0.231 4.231 22 C -0.061 4.061 23 O 0.097 5.903 24 N -0.364 5.364 25 H 0.009 0.991 26 H 0.049 0.951 27 H 0.079 0.921 28 H 0.027 0.973 29 H -0.018 1.018 30 H 0.263 0.737 31 H 0.027 0.973 32 H 0.070 0.930 33 H 0.369 0.631 34 H 0.036 0.964 35 H 0.076 0.924 36 H 0.342 0.658 37 H 0.034 0.966 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.173 0.827 42 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.908 -25.697 -16.226 30.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.242 5.242 3 C 0.035 3.965 4 C -0.545 4.545 5 H 0.100 0.900 6 C -0.135 4.135 7 N -0.539 5.539 8 Si 0.703 3.297 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.193 1.193 12 C -0.109 4.109 13 C 0.057 3.943 14 H 0.111 0.889 15 O -0.337 6.337 16 C -0.103 4.103 17 N -0.309 5.309 18 C -0.066 4.066 19 C -0.079 4.079 20 C -0.139 4.139 21 C -0.252 4.252 22 C -0.143 4.143 23 O 0.031 5.969 24 N -0.068 5.068 25 H 0.027 0.973 26 H 0.068 0.932 27 H 0.098 0.902 28 H 0.045 0.955 29 H -0.001 1.001 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.215 0.785 34 H 0.054 0.946 35 H 0.094 0.906 36 H 0.160 0.840 37 H 0.052 0.948 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.190 0.810 42 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 2.360 -25.057 -15.809 29.721 hybrid contribution 0.710 0.882 -1.764 2.096 sum 3.071 -24.175 -17.572 30.044 Atomic orbital electron populations 1.22280 0.88336 0.99580 1.01041 1.61862 1.07317 1.15960 1.39095 1.20217 0.95091 0.84132 0.97016 1.21040 1.35444 0.97133 1.00914 0.90023 1.24912 0.95831 0.97382 0.95337 1.69895 1.46965 1.13200 1.23860 0.86858 0.80620 0.80028 0.82159 1.20430 1.21121 1.19311 1.22784 1.00540 0.94341 0.93285 1.21841 0.98288 0.90472 0.83672 0.88889 1.86602 1.24916 1.84885 1.37330 1.22731 1.01201 0.88149 0.98201 1.60357 1.16498 1.10436 1.43635 1.21874 1.00580 0.91869 0.92248 1.19976 1.01005 0.93387 0.93485 1.23669 1.00416 0.96773 0.93088 1.22814 1.04783 0.98654 0.98955 1.26058 1.00622 0.96624 0.90970 1.84852 1.51094 1.26561 1.34398 1.73862 1.16147 1.11712 1.05114 0.97252 0.93189 0.90199 0.95538 1.00083 0.92686 0.95447 0.91126 0.78498 0.94583 0.90588 0.84033 0.94822 0.90924 0.88425 0.89883 0.80981 0.76713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 9.16 60.06 0.55 1.26 16 2 N -0.52 -11.00 4.62 -244.36 -1.13 -12.13 16 3 C 0.16 3.98 3.79 -4.97 -0.02 3.96 16 4 C -0.51 -14.65 9.07 -34.44 -0.31 -14.96 16 5 H 0.08 2.58 7.35 -52.48 -0.39 2.19 16 6 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 7 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 8 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 12 C 0.02 0.34 4.62 -3.82 -0.02 0.32 16 13 C 0.12 1.63 3.02 -26.73 -0.08 1.55 16 14 H 0.09 1.32 6.47 -51.93 -0.34 0.99 16 15 O -0.53 -8.34 13.15 -35.23 -0.46 -8.81 16 16 C 0.03 0.30 5.32 -3.83 -0.02 0.28 16 17 N -0.68 -7.02 6.45 -113.78 -0.73 -7.76 16 18 C 0.06 0.60 5.66 -3.82 -0.02 0.58 16 19 C -0.04 -0.32 6.07 -27.89 -0.17 -0.49 16 20 C 0.02 0.18 6.59 -82.10 -0.54 -0.36 16 21 C -0.23 -1.45 11.12 -39.38 -0.44 -1.89 16 22 C -0.06 -0.32 12.30 29.74 0.37 0.05 16 23 O 0.10 0.84 11.20 17.17 0.19 1.03 16 24 N -0.36 -3.81 12.06 33.43 0.40 -3.41 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.05 0.85 6.30 -51.93 -0.33 0.53 16 27 H 0.08 1.75 6.86 -51.93 -0.36 1.40 16 28 H 0.03 0.66 6.99 -51.93 -0.36 0.29 16 29 H -0.02 -0.46 7.55 -51.93 -0.39 -0.85 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 31 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 32 H 0.07 1.13 7.93 -51.93 -0.41 0.72 16 33 H 0.37 4.80 9.04 45.56 0.41 5.22 16 34 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.34 3.31 8.73 -39.29 -0.34 2.97 16 37 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.22 0.14 8.06 -52.49 -0.42 -0.28 16 LS Contribution 348.60 15.07 5.25 5.25 Total: -1.00 -34.10 348.60 -7.07 -41.17 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.90 Total: 2.54 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -0.80 Total: -7.84 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.69 Total: -50.38 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -0.27 Total: -7.78 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.10 -7.07 -41.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353301698.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.697 kcal (2) G-P(sol) polarization free energy of solvation -34.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds