Wall clock time and date at job start Tue Mar 31 2020 06:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.50696 * 109.47351 * 293.95574 * 3 2 1 5 5 H 1.08007 * 119.99780 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00506 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99253 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00341 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47212 * 89.99910 * 8 6 4 10 10 H 1.48494 * 109.47103 * 209.99646 * 8 6 4 11 11 H 1.48502 * 109.46911 * 329.99720 * 8 6 4 12 12 C 1.46898 * 111.00443 * 123.95328 * 2 1 3 13 13 C 1.53004 * 109.46619 * 66.04574 * 12 2 1 14 14 H 1.08992 * 109.47535 * 304.99943 * 13 12 2 15 15 O 1.42897 * 109.47256 * 65.00537 * 13 12 2 16 16 C 1.52998 * 109.46799 * 184.99872 * 13 12 2 17 17 N 1.46903 * 109.47302 * 179.97438 * 16 13 12 18 18 C 1.46900 * 111.00131 * 180.02562 * 17 16 13 19 19 C 1.53005 * 109.46765 * 180.02562 * 18 17 16 20 20 C 1.50703 * 109.46780 * 179.97438 * 19 18 17 21 21 C 1.41380 * 126.79592 * 124.71202 * 20 19 18 22 22 C 1.35456 * 103.98257 * 179.89153 * 21 20 19 23 23 O 1.34038 * 106.44493 * 0.36758 * 22 21 20 24 24 N 1.20922 * 111.57016 * 359.75054 * 23 22 21 25 25 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 26 26 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 27 27 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46995 * 53.95554 * 3 2 1 29 29 H 1.09001 * 109.46848 * 173.95560 * 3 2 1 30 30 H 0.96999 * 119.99606 * 179.97438 * 7 6 4 31 31 H 1.08994 * 109.47410 * 186.04624 * 12 2 1 32 32 H 1.08999 * 109.47216 * 306.04953 * 12 2 1 33 33 H 0.96701 * 114.00549 * 59.99438 * 15 13 12 34 34 H 1.08996 * 109.47622 * 300.00336 * 16 13 12 35 35 H 1.09009 * 109.47203 * 60.00381 * 16 13 12 36 36 H 1.00901 * 110.99459 * 56.04553 * 17 16 13 37 37 H 1.09000 * 109.47282 * 300.00189 * 18 17 16 38 38 H 1.08998 * 109.46842 * 60.00449 * 18 17 16 39 39 H 1.09000 * 109.47142 * 299.99989 * 19 18 17 40 40 H 1.08998 * 109.47307 * 60.00448 * 19 18 17 41 41 H 1.08000 * 128.00988 * 0.02562 * 21 20 19 42 42 H 1.08001 * 126.77605 * 180.10058 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0738 1.5116 -2.0484 6 6 2.0275 3.3493 -1.5289 7 7 2.7127 4.0016 -0.6153 8 14 1.5825 4.1870 -3.1380 9 1 0.2706 4.8681 -2.9952 10 1 2.6250 5.1877 -3.4799 11 1 1.4980 3.1713 -4.2181 12 6 1.9956 -0.7659 1.1375 13 6 1.6315 -2.2426 0.9702 14 1 0.5533 -2.3389 0.8432 15 8 2.2957 -2.7695 -0.1801 16 6 2.0701 -3.0199 2.2129 17 7 1.7201 -4.4376 2.0526 18 6 2.1267 -5.2166 3.2299 19 6 1.7470 -6.6846 3.0259 20 6 2.1646 -7.4839 4.2333 21 6 1.3379 -8.3085 5.0304 22 6 2.1768 -8.7985 5.9742 23 8 3.3831 -8.2724 5.7197 24 7 3.3567 -7.5474 4.7523 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.5611 1.9274 0.8309 29 1 3.0797 1.3445 0.1082 30 1 2.9879 4.9175 -0.7776 31 1 3.0798 -0.6610 1.1755 32 1 1.5612 -0.3873 2.0628 33 1 3.2602 -2.7166 -0.1361 34 1 3.1484 -2.9236 2.3400 35 1 1.5636 -2.6180 3.0905 36 1 2.1253 -4.8169 1.2100 37 1 3.2054 -5.1359 3.3641 38 1 1.6205 -4.8295 4.1141 39 1 0.6684 -6.7656 2.8913 40 1 2.2535 -7.0715 2.1416 41 1 0.2823 -8.5043 4.9126 42 1 1.9229 -9.4755 6.7764 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353301702.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:49 Heat of formation + Delta-G solvation = 13.100807 kcal Electronic energy + Delta-G solvation = -21422.707569 eV Core-core repulsion = 18020.182542 eV Total energy + Delta-G solvation = -3402.525027 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.28205 -38.43306 -36.70762 -35.50568 -34.38067 -32.51514 -32.15408 -30.83264 -28.92276 -27.04519 -25.86766 -23.94437 -23.50160 -22.73458 -21.41139 -20.86196 -20.14595 -18.14234 -17.87626 -16.71624 -16.34644 -15.97662 -15.48284 -15.23785 -14.97215 -14.61341 -14.40478 -13.92373 -13.83757 -13.58610 -13.39703 -12.83955 -12.60083 -12.34797 -12.04095 -11.92045 -11.83914 -11.31283 -11.28753 -11.09277 -10.87416 -10.73614 -10.67727 -10.38913 -10.26021 -10.02656 -9.97723 -9.60191 -9.10166 -8.59431 -8.42166 -7.17718 -6.01090 -4.01946 1.14198 1.86507 2.90884 3.33531 3.39440 3.44791 3.67429 3.93974 4.30954 4.45589 4.67814 4.75525 4.76489 4.85538 4.93752 5.06272 5.14065 5.21734 5.29845 5.32007 5.37657 5.49532 5.60108 5.65029 5.69696 5.74235 5.80694 6.07054 6.21249 6.34999 6.43831 6.78946 6.79761 7.23835 7.28752 7.34456 7.82094 7.91955 7.96302 8.11691 8.22424 8.57353 9.06126 9.62150 11.09922 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.056231 B = 0.002150 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.830067 B =13018.227402 C =13160.709353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.530 5.530 3 C 0.193 3.807 4 C -0.505 4.505 5 H 0.064 0.936 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.025 3.975 13 C 0.114 3.886 14 H 0.105 0.895 15 O -0.546 6.546 16 C 0.028 3.972 17 N -0.684 5.684 18 C 0.064 3.936 19 C -0.040 4.040 20 C 0.020 3.980 21 C -0.231 4.231 22 C -0.061 4.061 23 O 0.098 5.902 24 N -0.363 5.363 25 H 0.073 0.927 26 H 0.009 0.991 27 H 0.048 0.952 28 H -0.011 1.011 29 H 0.028 0.972 30 H 0.261 0.739 31 H 0.069 0.931 32 H 0.029 0.971 33 H 0.367 0.633 34 H 0.033 0.967 35 H 0.078 0.922 36 H 0.349 0.651 37 H 0.035 0.965 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.172 0.828 42 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.360 -24.955 13.099 28.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.254 5.254 3 C 0.068 3.932 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.148 4.148 7 N -0.540 5.540 8 Si 0.727 3.273 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.197 1.197 12 C -0.105 4.105 13 C 0.054 3.946 14 H 0.122 0.878 15 O -0.350 6.350 16 C -0.102 4.102 17 N -0.317 5.317 18 C -0.066 4.066 19 C -0.079 4.079 20 C -0.139 4.139 21 C -0.253 4.253 22 C -0.143 4.143 23 O 0.031 5.969 24 N -0.067 5.067 25 H 0.092 0.908 26 H 0.028 0.972 27 H 0.066 0.934 28 H 0.007 0.993 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.047 0.953 33 H 0.213 0.787 34 H 0.051 0.949 35 H 0.097 0.903 36 H 0.168 0.832 37 H 0.053 0.947 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.102 0.898 41 H 0.190 0.810 42 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -2.191 -24.457 12.411 27.513 hybrid contribution 0.160 0.801 0.310 0.873 sum -2.031 -23.656 12.721 26.936 Atomic orbital electron populations 1.22257 0.88961 0.99274 1.00723 1.62035 1.06875 1.17427 1.39104 1.19748 0.95247 0.81619 0.96636 1.21174 1.34597 0.96852 1.01695 0.91780 1.25008 0.95347 0.97381 0.97070 1.69963 1.38516 1.11427 1.34138 0.86478 0.77938 0.79182 0.83719 1.20769 1.21291 1.19715 1.22705 1.00410 0.93866 0.93517 1.22008 0.98300 0.90715 0.83572 0.87751 1.86604 1.22835 1.83817 1.41734 1.22685 0.98661 0.88739 1.00130 1.60347 1.64257 1.02217 1.04843 1.21867 0.98446 0.91835 0.94440 1.19979 1.02890 0.92856 0.92141 1.23667 0.89315 1.00566 1.00398 1.22807 1.02552 1.02399 0.97502 1.26055 0.84438 1.01544 1.02250 1.84855 1.31592 1.44957 1.35482 1.73867 1.22081 1.10900 0.99882 0.90818 0.97213 0.93379 0.99303 0.95418 0.92979 0.91297 0.95327 0.78745 0.94901 0.90348 0.83215 0.94725 0.91006 0.88537 0.89820 0.81020 0.76729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.17 60.07 0.55 1.28 16 2 N -0.53 -11.69 4.70 -244.37 -1.15 -12.84 16 3 C 0.19 5.12 4.72 -4.97 -0.02 5.09 16 4 C -0.50 -14.48 8.52 -34.44 -0.29 -14.77 16 5 H 0.06 1.83 7.10 -52.48 -0.37 1.46 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -27.11 13.29 55.43 0.74 -26.38 16 8 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 12 C 0.02 0.44 4.60 -3.82 -0.02 0.42 16 13 C 0.11 1.66 3.20 -26.73 -0.09 1.57 16 14 H 0.10 1.63 6.26 -51.93 -0.33 1.31 16 15 O -0.55 -8.31 12.62 -35.23 -0.44 -8.76 16 16 C 0.03 0.33 5.39 -3.82 -0.02 0.31 16 17 N -0.68 -7.46 6.50 -113.77 -0.74 -8.20 16 18 C 0.06 0.63 5.66 -3.82 -0.02 0.61 16 19 C -0.04 -0.34 6.07 -27.88 -0.17 -0.51 16 20 C 0.02 0.18 6.59 -82.10 -0.54 -0.36 16 21 C -0.23 -1.50 11.12 -39.38 -0.44 -1.93 16 22 C -0.06 -0.33 12.30 29.74 0.37 0.04 16 23 O 0.10 0.86 11.20 17.18 0.19 1.05 16 24 N -0.36 -3.90 12.06 33.42 0.40 -3.50 16 25 H 0.07 1.59 6.86 -51.93 -0.36 1.23 16 26 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 27 H 0.05 0.84 6.21 -51.93 -0.32 0.52 16 28 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 29 H 0.03 0.78 7.93 -51.93 -0.41 0.37 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.07 1.20 7.93 -51.93 -0.41 0.79 16 32 H 0.03 0.50 8.12 -51.93 -0.42 0.07 16 33 H 0.37 4.53 9.05 45.56 0.41 4.94 16 34 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 36 H 0.35 3.73 8.12 -39.29 -0.32 3.41 16 37 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.17 0.69 8.06 -52.49 -0.42 0.26 16 42 H 0.22 0.17 8.06 -52.49 -0.42 -0.25 16 LS Contribution 351.12 15.07 5.29 5.29 Total: -1.00 -33.37 351.12 -7.41 -40.78 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -5.89 Total: 2.39 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -0.79 Total: -6.81 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: -0.75 Total: -50.91 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: -0.25 Total: -7.70 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.37 -7.41 -40.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353301702.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.879 kcal (2) G-P(sol) polarization free energy of solvation -33.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds