Wall clock time and date at job start Tue Mar 31 2020 06:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42892 * 114.00367 * 2 1 4 4 C 1.53002 * 109.47377 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47222 * 179.97438 * 4 3 2 6 6 N 1.40585 * 127.38232 * 270.49268 * 5 4 3 7 7 N 1.28913 * 106.81200 * 180.02562 * 6 5 4 8 8 N 1.28418 * 110.31641 * 359.73118 * 7 6 5 9 9 C 1.31473 * 110.51181 * 0.45234 * 8 7 6 10 10 N 1.38376 * 126.44104 * 179.81443 * 9 8 7 11 11 C 1.46898 * 111.00492 * 255.63213 * 10 9 8 12 12 C 1.50694 * 109.47568 * 199.72588 * 11 10 9 13 13 H 1.08004 * 119.99878 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00299 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00113 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00007 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47182 * 0.02562 * 16 14 12 18 18 H 1.48491 * 109.46873 * 120.00433 * 16 14 12 19 19 H 1.48498 * 109.46954 * 240.00252 * 16 14 12 20 20 C 1.46908 * 110.99846 * 19.58703 * 10 9 8 21 21 C 1.52997 * 109.47096 * 66.04404 * 20 10 9 22 22 C 1.53000 * 109.47233 * 64.99798 * 21 20 10 23 23 C 1.52995 * 109.47090 * 185.00055 * 21 20 10 24 24 H 1.09004 * 109.47800 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47364 * 300.00354 * 1 2 3 26 26 H 1.09005 * 109.46930 * 60.00103 * 1 2 3 27 27 H 1.09001 * 109.47509 * 59.99941 * 3 2 1 28 28 H 1.09000 * 109.46935 * 299.99681 * 3 2 1 29 29 H 1.09000 * 109.47148 * 59.99962 * 4 3 2 30 30 H 1.08999 * 109.47247 * 300.00227 * 4 3 2 31 31 H 1.09003 * 109.46919 * 79.72115 * 11 10 9 32 32 H 1.09003 * 109.46950 * 319.72669 * 11 10 9 33 33 H 0.97001 * 120.00507 * 179.97438 * 15 14 12 34 34 H 1.09000 * 109.47049 * 186.04453 * 20 10 9 35 35 H 1.08999 * 109.46931 * 306.04480 * 20 10 9 36 36 H 1.09000 * 109.47013 * 304.99772 * 21 20 10 37 37 H 1.09000 * 109.47143 * 60.00053 * 22 21 20 38 38 H 1.08998 * 109.46941 * 179.97438 * 22 21 20 39 39 H 1.08996 * 109.47258 * 300.00374 * 22 21 20 40 40 H 1.09004 * 109.47425 * 59.99768 * 23 21 20 41 41 H 1.08998 * 109.47535 * 179.97438 * 23 21 20 42 42 H 1.08998 * 109.47337 * 300.00129 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 6 3.5354 1.1845 0.0006 5 7 4.1314 2.5228 0.0000 6 7 4.4702 3.3058 -1.1174 7 7 4.9650 4.4068 -0.6650 8 7 4.9675 4.4001 0.6192 9 6 4.4741 3.2699 1.0749 10 7 4.3275 2.9136 2.4040 11 6 5.3557 1.9445 2.8058 12 6 4.9069 1.2228 4.0503 13 1 3.9530 1.4600 4.4977 14 6 5.7136 0.2590 4.6171 15 7 6.8750 -0.0302 4.0720 16 14 5.1574 -0.6351 6.1601 17 1 3.8234 -0.1292 6.5717 18 1 5.0705 -2.0915 5.8840 19 1 6.1363 -0.3956 7.2508 20 6 4.3525 4.0983 3.2724 21 6 3.1230 4.9639 2.9897 22 6 1.8586 4.1986 3.3854 23 6 3.2119 6.2570 3.8026 24 1 -0.3635 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8462 -0.8900 29 1 3.8574 0.6434 -0.8891 30 1 3.8567 0.6437 0.8908 31 1 6.2902 2.4686 3.0067 32 1 5.5089 1.2234 2.0029 33 1 7.4427 -0.7080 4.4710 34 1 4.3435 3.7840 4.3160 35 1 5.2561 4.6749 3.0744 36 1 3.0845 5.2045 1.9273 37 1 1.8971 3.9579 4.4478 38 1 0.9827 4.8155 3.1844 39 1 1.7953 3.2773 2.8063 40 1 4.1127 6.8022 3.5207 41 1 2.3362 6.8739 3.6010 42 1 3.2504 6.0164 4.8650 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354291408.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:41 Heat of formation + Delta-G solvation = 70.877055 kcal Electronic energy + Delta-G solvation = -23734.835862 eV Core-core repulsion = 20367.108952 eV Total energy + Delta-G solvation = -3367.726910 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.175 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.51455 -38.10891 -37.91109 -35.12785 -34.18784 -32.80417 -30.77952 -29.91633 -27.47319 -26.84210 -26.50624 -25.38690 -24.08127 -22.61464 -22.02154 -20.86710 -19.62506 -17.26710 -16.94494 -16.13152 -16.09721 -15.89595 -15.59868 -15.01025 -14.87116 -14.64364 -13.99683 -13.94999 -13.44581 -12.95939 -12.57667 -12.49730 -12.35073 -12.14764 -11.95506 -11.84516 -11.57973 -11.43940 -11.29758 -11.12160 -10.94797 -10.75533 -10.57693 -10.51119 -10.31894 -10.25960 -10.05106 -9.89370 -9.76227 -9.41856 -8.68942 -8.02453 -6.27667 -4.32765 1.46008 2.05377 2.76637 3.18567 3.27114 3.30391 3.71148 4.12855 4.34150 4.63599 4.87915 4.95885 5.08731 5.12933 5.20725 5.25901 5.27115 5.29605 5.41202 5.44412 5.55682 5.73902 5.82788 5.87587 5.94380 6.02072 6.03809 6.11665 6.15597 6.29803 6.40823 6.42927 6.62316 6.68152 6.75741 6.89070 6.98849 7.38938 7.46682 7.76768 8.03920 8.73733 8.97613 9.33502 10.82675 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.010393 B = 0.007102 C = 0.005802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.476483 B = 3941.330746 C = 4824.481712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.383 6.383 3 C 0.055 3.945 4 C 0.131 3.869 5 N -0.383 5.383 6 N -0.106 5.106 7 N -0.039 5.039 8 N -0.371 5.371 9 C 0.447 3.553 10 N -0.453 5.453 11 C 0.200 3.800 12 C -0.517 4.517 13 H 0.072 0.928 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.903 3.097 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.283 1.283 20 C 0.076 3.924 21 C -0.096 4.096 22 C -0.137 4.137 23 C -0.141 4.141 24 H 0.089 0.911 25 H 0.044 0.956 26 H 0.040 0.960 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.106 0.894 30 H 0.126 0.874 31 H 0.017 0.983 32 H 0.033 0.967 33 H 0.266 0.734 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.041 0.959 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.795 3.576 -3.638 11.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.301 6.301 3 C -0.023 4.023 4 C 0.008 3.992 5 N -0.183 5.183 6 N -0.093 5.093 7 N -0.035 5.035 8 N -0.230 5.230 9 C 0.082 3.918 10 N -0.179 5.179 11 C 0.077 3.923 12 C -0.555 4.555 13 H 0.090 0.910 14 C -0.141 4.141 15 N -0.529 5.529 16 Si 0.731 3.269 17 H -0.194 1.194 18 H -0.208 1.208 19 H -0.209 1.209 20 C -0.051 4.051 21 C -0.115 4.115 22 C -0.195 4.195 23 C -0.198 4.198 24 H 0.107 0.893 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.124 0.876 30 H 0.144 0.856 31 H 0.035 0.965 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.118 0.882 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.602 3.882 -4.543 12.170 hybrid contribution -0.071 -0.876 1.198 1.486 sum -10.673 3.006 -3.346 11.582 Atomic orbital electron populations 1.22755 0.80386 1.02930 1.00105 1.87814 1.20147 1.26619 1.95505 1.22668 0.92688 0.85540 1.01414 1.21625 0.92045 0.78282 1.07269 1.51085 1.46218 1.16541 1.04408 1.82440 1.20328 0.99771 1.06790 1.77772 1.09807 1.12428 1.03526 1.74923 1.24509 1.20616 1.02989 1.23701 0.90395 0.86990 0.90735 1.59250 1.49438 1.15499 0.93667 1.20046 0.86589 0.88234 0.97441 1.20999 1.04912 1.20362 1.09244 0.91015 1.24974 0.94679 0.96681 0.97793 1.69954 1.10366 1.32343 1.40285 0.86349 0.78843 0.79432 0.82326 1.19427 1.20830 1.20872 1.22216 0.97351 0.88120 0.97434 1.21167 0.95254 0.94939 1.00189 1.21743 0.95948 0.99960 1.01823 1.21735 1.01429 0.96682 0.99996 0.89293 0.93728 0.94149 0.91847 0.92821 0.87590 0.85601 0.96471 0.94940 0.92472 0.88165 0.92695 0.91613 0.92547 0.94013 0.92256 0.92557 0.93066 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.38 -5.26 10.70 -35.23 -0.38 -5.64 16 3 C 0.06 0.76 6.26 37.16 0.23 0.99 16 4 C 0.13 2.04 6.80 -4.04 -0.03 2.01 16 5 N -0.38 -6.93 3.69 -61.86 -0.23 -7.15 16 6 N -0.11 -2.00 13.93 60.35 0.84 -1.16 16 7 N -0.04 -0.78 13.38 60.35 0.81 0.02 16 8 N -0.37 -7.50 10.30 30.10 0.31 -7.19 16 9 C 0.45 8.72 5.98 -320.42 -1.92 6.80 16 10 N -0.45 -8.90 3.90 -176.22 -0.69 -9.58 16 11 C 0.20 4.66 4.45 -4.98 -0.02 4.64 16 12 C -0.52 -12.80 8.57 -34.44 -0.30 -13.10 16 13 H 0.07 1.74 7.78 -52.48 -0.41 1.33 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.89 -24.43 13.29 55.43 0.74 -23.69 16 16 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 17 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 C 0.08 1.35 3.88 -3.82 -0.01 1.34 16 21 C -0.10 -1.47 2.80 -90.62 -0.25 -1.72 16 22 C -0.14 -1.96 9.08 37.16 0.34 -1.62 16 23 C -0.14 -1.81 9.19 37.16 0.34 -1.46 16 24 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.13 2.18 6.76 -51.93 -0.35 1.83 16 31 H 0.02 0.45 8.00 -51.93 -0.42 0.03 16 32 H 0.03 0.81 6.73 -51.93 -0.35 0.46 16 33 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.10 1.83 7.41 -51.93 -0.38 1.45 16 35 H 0.05 1.02 7.69 -51.93 -0.40 0.62 16 36 H 0.07 1.11 6.62 -51.93 -0.34 0.77 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.92 7.73 -51.93 -0.40 0.52 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 350.10 15.07 5.28 5.28 Total: -1.00 -27.87 350.10 -5.78 -33.65 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -6.84 Total: -0.28 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -0.60 Total: 0.83 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: 1.78 Total: -48.76 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -0.38 Total: -5.64 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -27.87 -5.78 -33.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354291408.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.531 kcal (2) G-P(sol) polarization free energy of solvation -27.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds