Wall clock time and date at job start Tue Mar 31 2020 05:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34783 * 119.99849 * 2 1 4 4 O 1.21283 * 119.99731 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.00007 * 359.97438 * 3 2 1 6 6 C 1.53003 * 109.46878 * 180.02562 * 5 3 2 7 7 C 1.52994 * 109.46838 * 179.97438 * 6 5 3 8 8 C 1.52996 * 109.47119 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.47159 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72211 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48496 * 109.47341 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46983 * 120.00379 * 13 11 9 16 16 H 1.48503 * 109.47491 * 240.00192 * 13 11 9 17 17 C 1.46498 * 120.00244 * 179.97438 * 2 1 3 18 18 H 1.09002 * 112.85201 * 170.33219 * 17 2 1 19 19 C 1.53780 * 113.61478 * 301.53280 * 17 2 1 20 20 C 1.53789 * 87.07904 * 139.97952 * 19 17 2 21 21 H 1.08997 * 113.61624 * 89.20301 * 20 19 17 22 22 C 1.50701 * 113.60928 * 220.01903 * 20 19 17 23 23 O 1.20818 * 120.00351 * 359.97438 * 22 20 19 24 24 O 1.34231 * 119.99596 * 179.97438 * 22 20 19 25 25 C 1.53779 * 113.61108 * 39.14272 * 17 2 1 26 26 H 1.09007 * 109.46937 * 90.00433 * 1 2 3 27 27 H 1.08997 * 109.47175 * 210.00004 * 1 2 3 28 28 H 1.08998 * 109.47305 * 330.00802 * 1 2 3 29 29 H 1.08998 * 109.46799 * 60.00721 * 5 3 2 30 30 H 1.09002 * 109.46835 * 300.00164 * 5 3 2 31 31 H 1.08998 * 109.46943 * 60.00655 * 6 5 3 32 32 H 1.08994 * 109.47116 * 300.00266 * 6 5 3 33 33 H 1.09004 * 109.46806 * 60.00265 * 7 6 5 34 34 H 1.09000 * 109.47828 * 300.00570 * 7 6 5 35 35 H 1.09004 * 109.47066 * 60.00422 * 8 7 6 36 36 H 1.08994 * 109.47405 * 300.00252 * 8 7 6 37 37 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 38 38 H 1.09001 * 113.61430 * 254.52617 * 19 17 2 39 39 H 1.09000 * 113.61329 * 25.43385 * 19 17 2 40 40 H 0.96694 * 117.00117 * 179.97438 * 24 22 20 41 41 H 1.09000 * 113.61625 * 334.56582 * 25 17 2 42 42 H 1.09001 * 113.61920 * 105.47129 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3853 2.4724 -0.0006 6 6 2.3796 3.6353 -0.0011 7 6 1.6146 4.9602 -0.0023 8 6 2.6087 6.1232 -0.0035 9 6 1.8552 7.4283 -0.0041 10 1 0.7752 7.4283 -0.0033 11 6 2.5446 8.6224 0.0006 12 7 3.8597 8.6224 0.0000 13 14 1.6105 10.2400 0.0077 14 1 0.1506 9.9686 0.0077 15 1 1.9698 11.0137 1.2233 16 1 1.9688 11.0238 -1.2017 17 6 2.1975 -1.2687 0.0006 18 1 3.2667 -1.1402 -0.1682 19 6 1.8674 -2.1701 1.2019 20 6 1.9075 -3.3556 0.2231 21 1 2.8970 -3.7998 0.1155 22 6 0.8301 -4.3798 0.4712 23 8 0.0418 -4.2212 1.3729 24 8 0.7464 -5.4683 -0.3098 25 6 1.5591 -2.3489 -0.8884 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5137 29 1 0.7584 2.5303 0.8892 30 1 0.7590 2.5298 -0.8908 31 1 3.0061 3.5772 -0.8911 32 1 3.0062 3.5779 0.8888 33 1 0.9876 5.0186 0.8875 34 1 0.9881 5.0174 -0.8925 35 1 3.2353 6.0646 -0.8935 36 1 3.2355 6.0663 0.8864 37 1 4.3447 9.4625 0.0029 38 1 2.6545 -2.1991 1.9554 39 1 0.8802 -1.9876 1.6265 40 1 0.0391 -6.0972 -0.1119 41 1 0.4875 -2.2154 -1.0364 42 1 2.0977 -2.5222 -1.8201 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605957639.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:48 Heat of formation + Delta-G solvation = -128.141772 kcal Electronic energy + Delta-G solvation = -21655.117984 eV Core-core repulsion = 18214.175468 eV Total energy + Delta-G solvation = -3440.942516 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.32051 -40.03200 -38.30397 -36.51649 -34.88697 -34.68173 -32.57461 -29.82129 -27.86064 -26.81812 -26.25630 -25.48460 -22.97886 -21.65523 -20.02662 -19.81614 -19.27013 -18.50887 -17.61132 -16.80299 -16.39351 -16.14207 -15.96531 -15.64320 -15.19877 -14.49888 -14.42501 -13.91305 -13.37295 -13.26955 -12.99811 -12.73574 -12.65969 -12.50360 -12.16778 -12.04677 -11.89577 -11.62524 -11.56101 -11.50367 -11.13520 -10.98105 -10.82895 -10.51859 -10.47070 -10.38727 -9.77139 -9.59481 -9.20330 -8.95413 -8.82979 -8.29471 -5.94096 -3.96391 1.69757 2.47226 2.64472 2.92932 3.33964 3.41128 3.45125 3.82896 3.92351 4.32236 4.38003 4.49715 4.63797 4.83722 4.89154 5.10833 5.13571 5.18753 5.21577 5.31932 5.35707 5.40647 5.42231 5.43792 5.53772 5.80899 5.88337 6.01791 6.15605 6.27341 6.36622 6.56944 6.85876 7.03039 7.20169 7.26705 7.42031 7.75968 7.91851 8.07570 8.17956 8.49446 9.11570 9.67159 11.17253 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.056230 B = 0.002254 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.835729 B =12417.122160 C =12666.543894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.614 5.614 3 C 0.515 3.485 4 O -0.533 6.533 5 C -0.137 4.137 6 C -0.104 4.104 7 C -0.110 4.110 8 C 0.019 3.981 9 C -0.519 4.519 10 H 0.055 0.945 11 C 0.054 3.946 12 N -0.895 5.895 13 Si 0.891 3.109 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.125 3.875 18 H 0.127 0.873 19 C -0.134 4.134 20 C -0.110 4.110 21 H 0.130 0.870 22 C 0.490 3.510 23 O -0.513 6.513 24 O -0.515 6.515 25 C -0.131 4.131 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.259 0.741 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.410 0.590 41 H 0.093 0.907 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.815 -28.588 -1.139 29.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.347 5.347 3 C 0.305 3.695 4 O -0.408 6.408 5 C -0.177 4.177 6 C -0.142 4.142 7 C -0.148 4.148 8 C -0.018 4.018 9 C -0.557 4.557 10 H 0.073 0.927 11 C -0.147 4.147 12 N -0.535 5.535 13 Si 0.719 3.281 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.211 1.211 17 C 0.021 3.979 18 H 0.145 0.855 19 C -0.172 4.172 20 C -0.129 4.129 21 H 0.148 0.852 22 C 0.333 3.667 23 O -0.401 6.401 24 O -0.327 6.327 25 C -0.170 4.170 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.120 0.880 40 H 0.268 0.732 41 H 0.111 0.889 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.920 -28.112 -0.979 28.968 hybrid contribution -1.060 0.321 0.162 1.120 sum -7.980 -27.792 -0.817 28.926 Atomic orbital electron populations 1.21817 0.79472 1.03608 1.02037 1.47873 1.06834 1.05410 1.74626 1.21176 0.88252 0.85448 0.74616 1.90693 1.14180 1.87304 1.48672 1.21839 1.00107 0.91914 1.03853 1.21465 0.97036 0.92732 1.02943 1.21645 0.99066 0.94002 1.00048 1.19103 0.94078 0.91292 0.97320 1.21325 0.93012 0.91188 1.50195 0.92708 1.25054 0.94855 0.99254 0.95515 1.69989 1.06036 1.26370 1.51062 0.86554 0.80074 0.83929 0.77529 1.19789 1.21071 1.21066 1.22439 0.98624 0.81770 0.95114 0.85483 1.23496 1.04545 0.91895 0.97276 1.22344 0.97815 0.91752 1.00996 0.85221 1.23274 0.84541 0.80670 0.78253 1.90730 1.41881 1.76274 1.31191 1.84557 1.56390 1.33517 1.58244 1.23433 1.02740 0.93272 0.97528 0.92392 0.91055 0.90197 0.89090 0.89117 0.91815 0.91809 0.93497 0.93491 0.96584 0.96583 0.93117 0.89641 0.88031 0.73168 0.88892 0.89222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.54 8.84 59.84 0.53 1.07 16 2 N -0.61 -6.30 3.08 -173.00 -0.53 -6.84 16 3 C 0.52 7.17 7.67 -10.98 -0.08 7.08 16 4 O -0.53 -9.49 15.46 5.55 0.09 -9.40 16 5 C -0.14 -1.83 4.25 -27.88 -0.12 -1.95 16 6 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 7 C -0.11 -2.27 5.15 -26.74 -0.14 -2.41 16 8 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 9 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 10 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 11 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 12 N -0.90 -27.61 13.29 55.43 0.74 -26.88 16 13 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 C 0.12 1.10 4.21 -67.12 -0.28 0.81 16 18 H 0.13 1.28 7.21 -51.93 -0.37 0.90 16 19 C -0.13 -1.03 6.94 -25.92 -0.18 -1.21 16 20 C -0.11 -0.68 4.26 -90.86 -0.39 -1.07 16 21 H 0.13 0.59 8.14 -51.93 -0.42 0.16 16 22 C 0.49 3.66 7.86 36.01 0.28 3.94 16 23 O -0.51 -5.41 16.66 -18.74 -0.31 -5.73 16 24 O -0.52 -2.76 13.42 -39.26 -0.53 -3.29 16 25 C -0.13 -0.84 7.09 -25.83 -0.18 -1.02 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.46 6.33 -51.93 -0.33 0.13 16 28 H 0.08 0.54 6.44 -51.93 -0.33 0.21 16 29 H 0.09 1.05 7.40 -51.93 -0.38 0.67 16 30 H 0.09 1.05 8.11 -51.93 -0.42 0.63 16 31 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 32 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.10 0.88 6.11 -51.93 -0.32 0.56 16 40 H 0.41 0.59 9.10 45.56 0.41 1.00 16 41 H 0.09 0.57 6.77 -51.93 -0.35 0.22 16 42 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 347.95 15.07 5.24 5.24 Total: -1.00 -36.27 347.95 -7.42 -43.69 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -5.86 Total: -3.55 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -1.23 Total: -10.20 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.20 Total: -33.71 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.75 Total: -18.42 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -36.27 -7.42 -43.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605957639.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.452 kcal (2) G-P(sol) polarization free energy of solvation -36.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds