Wall clock time and date at job start Tue Mar 31 2020 05:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00144 * 2 1 4 4 H 1.08998 * 109.57285 * 29.84157 * 3 2 1 5 5 C 1.53118 * 109.52390 * 269.68671 * 3 2 1 6 6 C 1.53037 * 109.27619 * 297.74816 * 5 3 2 7 7 N 1.46848 * 109.52557 * 300.81762 * 6 5 3 8 8 C 1.46895 * 111.00132 * 185.84088 * 7 6 5 9 9 C 1.52994 * 109.47443 * 312.76020 * 8 7 6 10 10 C 1.50704 * 115.55784 * 79.02037 * 9 8 7 11 11 H 1.07998 * 120.00198 * 218.24358 * 10 9 8 12 12 C 1.37873 * 119.99944 * 38.24770 * 10 9 8 13 13 N 1.31511 * 120.00019 * 13.07288 * 12 10 9 14 14 Si 1.86806 * 119.99930 * 193.07251 * 12 10 9 15 15 H 1.48509 * 109.46830 * 64.99796 * 14 12 10 16 16 H 1.48504 * 109.47104 * 184.99327 * 14 12 10 17 17 H 1.48496 * 109.47356 * 304.99610 * 14 12 10 18 18 C 1.53002 * 117.50037 * 293.33741 * 9 8 7 19 19 C 1.53004 * 60.02983 * 252.51509 * 18 9 8 20 20 C 1.46850 * 111.19525 * 61.74378 * 7 6 5 21 21 H 1.09005 * 109.46176 * 58.26186 * 20 7 6 22 22 C 1.50701 * 109.46287 * 178.24618 * 20 7 6 23 23 O 1.20826 * 120.00214 * 22.37408 * 22 20 7 24 24 O 1.34231 * 119.99645 * 202.37904 * 22 20 7 25 25 C 1.53044 * 109.52177 * 298.25928 * 20 7 6 26 26 H 1.08997 * 109.47117 * 299.99574 * 1 2 3 27 27 H 1.08998 * 109.47264 * 60.00008 * 1 2 3 28 28 H 1.09008 * 109.47132 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.50558 * 57.68774 * 5 3 2 30 30 H 1.08999 * 109.50777 * 177.77071 * 5 3 2 31 31 H 1.09003 * 109.46324 * 180.80721 * 6 5 3 32 32 H 1.08996 * 109.46607 * 60.83769 * 6 5 3 33 33 H 1.09003 * 109.47183 * 192.76256 * 8 7 6 34 34 H 1.08995 * 109.47257 * 72.76708 * 8 7 6 35 35 H 0.97003 * 119.99766 * 174.99290 * 13 12 10 36 36 H 1.09001 * 117.49769 * 145.01539 * 18 9 8 37 37 H 1.08992 * 117.49848 * 0.02562 * 18 9 8 38 38 H 1.09003 * 117.49456 * 107.47605 * 19 18 9 39 39 H 1.09002 * 117.50195 * 252.47232 * 19 18 9 40 40 H 0.96699 * 116.99947 * 179.97438 * 24 22 20 41 41 H 1.09002 * 109.50146 * 179.12084 * 25 20 7 42 42 H 1.08992 * 109.50273 * 299.23667 * 25 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 2.0013 0.5110 5 6 2.2256 1.7697 -1.4431 6 6 3.2078 0.8232 -2.1371 7 7 4.4834 0.8200 -1.4095 8 6 5.4950 0.0301 -2.1241 9 6 4.8905 -1.3103 -2.5467 10 6 4.0153 -1.2711 -3.7728 11 1 3.1219 -1.8763 -3.8182 12 6 4.3550 -0.4628 -4.8368 13 7 5.5549 0.0719 -4.8995 14 14 3.1111 -0.1272 -6.1894 15 1 1.9667 0.6369 -5.6310 16 1 3.7548 0.6638 -7.2689 17 1 2.6228 -1.4155 -6.7437 18 6 4.5106 -2.2946 -1.4387 19 6 5.7321 -2.5684 -2.3185 20 6 4.3095 0.3327 -0.0352 21 1 3.8901 -0.6732 -0.0568 22 6 5.6460 0.3049 0.6606 23 8 6.5492 1.0016 0.2622 24 8 5.8330 -0.4941 1.7229 25 6 3.3601 1.2646 0.7215 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.2739 1.7599 -1.9744 30 1 2.6321 2.7810 -1.4433 31 1 3.3744 1.1593 -3.1605 32 1 2.7939 -0.1850 -2.1489 33 1 6.3478 -0.1464 -1.4685 34 1 5.8236 0.5756 -3.0087 35 1 5.8189 0.5806 -5.6821 36 1 3.6276 -2.9139 -1.5966 37 1 4.6909 -1.9871 -0.4087 38 1 6.7161 -2.4406 -1.8673 39 1 5.6528 -3.3681 -3.0550 40 1 6.7073 -0.4781 2.1357 41 1 3.2190 0.8939 1.7368 42 1 3.7851 2.2676 0.7555 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606757041.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:41 Heat of formation + Delta-G solvation = -89.491533 kcal Electronic energy + Delta-G solvation = -25019.904682 eV Core-core repulsion = 21580.638166 eV Total energy + Delta-G solvation = -3439.266516 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.41204 -38.74360 -37.35550 -35.70560 -35.01790 -32.33026 -31.47969 -30.72522 -26.75644 -25.85290 -25.52395 -24.11155 -22.24978 -21.29564 -20.85287 -19.25495 -18.72471 -17.67652 -16.66888 -16.10724 -15.81656 -15.22149 -15.14192 -14.92703 -14.62259 -14.30547 -13.91903 -13.68953 -13.11938 -12.79975 -12.63643 -12.23451 -12.15972 -11.86480 -11.51360 -11.24356 -11.14824 -11.05001 -10.94061 -10.82617 -10.63133 -10.39165 -10.27664 -10.10634 -9.99501 -9.63622 -9.48419 -9.20021 -8.86328 -8.76587 -8.01429 -7.18047 -6.03505 -4.04101 2.66133 3.25355 3.32919 3.34488 3.37089 3.97741 4.34350 4.78851 4.99391 5.03654 5.15779 5.29513 5.41044 5.51703 5.53905 5.59883 5.76892 5.81063 5.83192 6.00586 6.09082 6.11335 6.23837 6.27626 6.37377 6.45884 6.63854 6.69578 6.73357 6.87204 6.94065 7.04376 7.26355 7.33438 7.40488 7.44208 7.67021 7.94401 8.07267 8.22386 8.38264 8.50565 8.87405 9.49666 10.96495 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014375 B = 0.008855 C = 0.006773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.333542 B = 3161.456276 C = 4132.796222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.093 3.907 4 H 0.059 0.941 5 C -0.148 4.148 6 C 0.076 3.924 7 N -0.509 5.509 8 C 0.070 3.930 9 C 0.028 3.972 10 C -0.482 4.482 11 H 0.059 0.941 12 C 0.072 3.928 13 N -0.872 5.872 14 Si 0.884 3.116 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.277 1.277 18 C -0.217 4.217 19 C -0.201 4.201 20 C 0.082 3.918 21 H 0.098 0.902 22 C 0.481 3.519 23 O -0.495 6.495 24 O -0.523 6.523 25 C -0.100 4.100 26 H 0.035 0.965 27 H 0.040 0.960 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.041 0.959 34 H 0.137 0.863 35 H 0.264 0.736 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.401 0.599 41 H 0.073 0.927 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.583 2.468 10.789 12.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.294 6.294 3 C 0.035 3.965 4 H 0.077 0.923 5 C -0.186 4.186 6 C -0.051 4.051 7 N -0.234 5.234 8 C -0.056 4.056 9 C 0.026 3.974 10 C -0.519 4.519 11 H 0.077 0.923 12 C -0.131 4.131 13 N -0.509 5.509 14 Si 0.712 3.288 15 H -0.199 1.199 16 H -0.212 1.212 17 H -0.203 1.203 18 C -0.254 4.254 19 C -0.240 4.240 20 C -0.028 4.028 21 H 0.115 0.885 22 C 0.322 3.678 23 O -0.381 6.381 24 O -0.334 6.334 25 C -0.138 4.138 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.154 0.846 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.259 0.741 41 H 0.092 0.908 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.337 3.183 10.408 12.595 hybrid contribution -0.405 -0.637 -0.496 0.904 sum -6.743 2.545 9.912 12.255 Atomic orbital electron populations 1.22721 0.81844 1.02415 0.99387 1.87990 1.18892 1.27527 1.94978 1.22105 0.93533 0.84568 0.96265 0.92346 1.22277 1.00137 1.00808 0.95383 1.22072 0.87069 0.99242 0.96732 1.62394 1.09946 1.52624 0.98448 1.22331 0.90901 0.93203 0.99194 1.19753 0.96510 0.87943 0.93208 1.20424 1.08017 1.24476 0.99025 0.92322 1.24910 0.95036 0.95390 0.97727 1.69702 1.17492 1.35087 1.28642 0.86772 0.81936 0.78562 0.81544 1.19870 1.21193 1.20298 1.23060 0.99079 1.08125 0.95149 1.22918 0.92908 1.05248 1.02917 1.21456 0.88002 1.01403 0.91937 0.88455 1.23661 0.91227 0.75695 0.77259 1.90689 1.44144 1.40247 1.62995 1.84580 1.40967 1.63206 1.44685 1.21637 0.93568 1.00373 0.98259 0.94671 0.94183 0.89957 0.91907 0.90968 0.89682 0.91126 0.94020 0.84595 0.92518 0.90720 0.91153 0.92160 0.90587 0.74103 0.90837 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.82 101.05 1.09 1.48 16 2 O -0.38 -5.85 9.21 -35.23 -0.32 -6.18 16 3 C 0.09 1.36 2.94 -26.61 -0.08 1.28 16 4 H 0.06 0.70 7.79 -51.93 -0.40 0.30 16 5 C -0.15 -2.42 5.79 -26.65 -0.15 -2.58 16 6 C 0.08 1.58 3.83 -3.83 -0.01 1.56 16 7 N -0.51 -10.85 4.45 -228.08 -1.02 -11.86 16 8 C 0.07 1.71 4.94 -3.83 -0.02 1.69 16 9 C 0.03 0.67 1.07 -155.62 -0.17 0.51 16 10 C -0.48 -12.52 6.32 -34.44 -0.22 -12.74 16 11 H 0.06 1.55 7.85 -52.49 -0.41 1.14 16 12 C 0.07 1.87 3.97 -17.82 -0.07 1.80 16 13 N -0.87 -23.66 10.79 55.43 0.60 -23.07 16 14 Si 0.88 20.24 29.56 -169.99 -5.02 15.21 16 15 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 16 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 C -0.22 -4.82 8.47 -26.73 -0.23 -5.04 16 19 C -0.20 -4.74 9.89 -26.69 -0.26 -5.00 16 20 C 0.08 1.52 1.61 -68.87 -0.11 1.41 16 21 H 0.10 1.95 4.38 -51.93 -0.23 1.72 16 22 C 0.48 8.86 6.07 36.01 0.22 9.08 16 23 O -0.50 -10.51 15.67 -18.75 -0.29 -10.80 16 24 O -0.52 -7.72 13.42 -39.26 -0.53 -8.25 16 25 C -0.10 -1.53 5.08 -26.65 -0.14 -1.67 16 26 H 0.03 0.34 8.09 -51.93 -0.42 -0.08 16 27 H 0.04 0.45 7.86 -51.93 -0.41 0.05 16 28 H 0.08 0.89 8.14 -51.92 -0.42 0.46 16 29 H 0.06 0.95 7.86 -51.93 -0.41 0.55 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.08 1.98 6.64 -51.93 -0.34 1.64 16 32 H 0.07 1.60 5.62 -51.93 -0.29 1.31 16 33 H 0.04 1.03 5.28 -51.93 -0.27 0.76 16 34 H 0.14 3.72 5.23 -51.93 -0.27 3.45 16 35 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 36 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 37 H 0.07 1.49 5.42 -51.93 -0.28 1.21 16 38 H 0.06 1.38 8.09 -51.93 -0.42 0.96 16 39 H 0.08 1.81 8.14 -51.93 -0.42 1.38 16 40 H 0.40 4.03 9.10 45.56 0.41 4.44 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 321.59 15.07 4.85 4.85 Total: -1.00 -29.68 321.59 -7.31 -36.98 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -5.42 Total: 11.31 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -0.15 Total: -8.21 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: -0.42 Total: -34.93 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -1.15 Total: -25.22 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.68 -7.31 -36.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606757041.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.507 kcal (2) G-P(sol) polarization free energy of solvation -29.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds