Wall clock time and date at job start Tue Mar 31 2020 05:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 114.00020 * 2 1 4 4 H 1.08997 * 109.51814 * 329.86336 * 3 2 1 5 5 C 1.53119 * 109.52581 * 89.99771 * 3 2 1 6 6 C 1.53031 * 109.27597 * 177.56150 * 5 3 2 7 7 N 1.46849 * 109.52425 * 300.81607 * 6 5 3 8 8 C 1.46900 * 111.00182 * 185.84087 * 7 6 5 9 9 C 1.53004 * 109.47015 * 77.12497 * 8 7 6 10 10 C 1.50703 * 115.54634 * 292.30150 * 9 8 7 11 11 H 1.08004 * 119.99683 * 143.76811 * 10 9 8 12 12 C 1.37869 * 120.00363 * 323.76823 * 10 9 8 13 13 N 1.31519 * 119.99667 * 340.83856 * 12 10 9 14 14 Si 1.86806 * 120.00380 * 160.83734 * 12 10 9 15 15 H 1.48497 * 109.46866 * 89.99929 * 14 12 10 16 16 H 1.48492 * 109.47146 * 210.00001 * 14 12 10 17 17 H 1.48496 * 109.46732 * 330.00040 * 14 12 10 18 18 C 1.52997 * 117.50115 * 146.63560 * 9 8 7 19 19 C 1.52993 * 117.50176 * 77.96796 * 9 8 7 20 20 C 1.46848 * 111.19839 * 61.74575 * 7 6 5 21 21 H 1.08997 * 109.46226 * 58.26918 * 20 7 6 22 22 C 1.50693 * 109.46546 * 178.25427 * 20 7 6 23 23 O 1.20831 * 119.99864 * 28.16196 * 22 20 7 24 24 O 1.34229 * 120.00124 * 208.16542 * 22 20 7 25 25 C 1.53043 * 109.52073 * 298.25879 * 20 7 6 26 26 H 1.09001 * 109.47412 * 300.00704 * 1 2 3 27 27 H 1.09004 * 109.46940 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46944 * 60.00267 * 1 2 3 29 29 H 1.09003 * 109.50035 * 297.49688 * 5 3 2 30 30 H 1.08999 * 109.50170 * 57.57757 * 5 3 2 31 31 H 1.08997 * 109.46874 * 60.83708 * 6 5 3 32 32 H 1.09003 * 109.46097 * 180.81756 * 6 5 3 33 33 H 1.09000 * 109.46929 * 197.11736 * 8 7 6 34 34 H 1.08997 * 109.47129 * 317.12302 * 8 7 6 35 35 H 0.97009 * 119.99445 * 185.06274 * 13 12 10 36 36 H 1.09004 * 117.49827 * 359.97438 * 18 9 8 37 37 H 1.08995 * 117.49948 * 145.02222 * 18 9 8 38 38 H 1.08999 * 117.50218 * 214.98143 * 19 9 8 39 39 H 1.09005 * 117.50079 * 0.02562 * 19 9 8 40 40 H 0.96704 * 116.99966 * 179.97438 * 24 22 20 41 41 H 1.08997 * 109.50463 * 299.23962 * 25 20 7 42 42 H 1.08996 * 109.50158 * 179.11767 * 25 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3467 1.9995 -0.5158 5 6 2.2183 1.7730 1.4431 6 6 2.8964 3.1449 1.4369 7 7 4.1872 3.0512 0.7429 8 6 4.9289 4.3157 0.8377 9 6 5.5526 4.4380 2.2295 10 6 4.5778 4.6111 3.3656 11 1 4.7755 4.1497 4.3219 12 6 3.4335 5.3585 3.1843 13 7 3.3588 6.2159 2.1898 14 14 1.9892 5.1536 4.3512 15 1 2.1307 6.1017 5.4853 16 1 0.7238 5.4338 3.6266 17 1 1.9653 3.7621 4.8694 18 6 6.9000 5.1544 2.3393 19 6 6.8249 3.6346 2.5066 20 6 4.0088 2.6496 -0.6583 21 1 3.3655 3.3700 -1.1635 22 6 5.3504 2.6073 -1.3433 23 8 6.3485 2.3749 -0.7031 24 8 5.4366 2.8279 -2.6645 25 6 3.3638 1.2628 -0.7146 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 1.2533 1.8464 1.9446 30 1 2.8489 1.0571 1.9702 31 1 2.2585 3.8631 0.9219 32 1 3.0592 3.4742 2.4632 33 1 5.7162 4.3324 0.0840 34 1 4.2477 5.1499 0.6702 35 1 2.5844 6.7940 2.1050 36 1 7.3423 5.5383 1.4200 37 1 7.0815 5.7506 3.2336 38 1 6.9570 3.2317 3.5107 39 1 7.2179 3.0193 1.6972 40 1 6.3187 2.7907 -3.0591 41 1 4.0130 0.5393 -0.2216 42 1 3.2172 0.9717 -1.7547 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606757044.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:51 Heat of formation + Delta-G solvation = -92.616869 kcal Electronic energy + Delta-G solvation = -24481.572255 eV Core-core repulsion = 21042.170215 eV Total energy + Delta-G solvation = -3439.402041 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.35794 -38.70320 -37.31620 -35.81115 -35.52987 -32.46378 -31.59459 -30.76442 -27.04243 -25.79973 -25.25273 -24.28292 -22.27603 -20.99359 -20.88579 -19.33942 -19.01415 -17.79095 -16.78363 -16.18050 -15.91883 -15.50322 -15.14922 -14.79680 -14.70012 -14.42056 -14.13313 -13.66417 -13.11169 -12.82241 -12.81231 -12.48781 -12.30695 -11.97167 -11.56737 -11.42751 -11.21781 -11.05550 -10.99971 -10.87416 -10.55541 -10.41910 -10.28424 -10.25375 -10.06955 -9.88400 -9.37634 -9.23845 -8.89512 -8.55373 -8.03347 -7.35245 -6.12831 -4.06386 2.53053 3.15700 3.18952 3.26723 3.31814 3.89886 4.26451 4.50595 4.95264 4.97377 5.15660 5.23281 5.36258 5.43367 5.46618 5.50643 5.64011 5.66152 5.73233 5.86440 5.99059 6.12070 6.23223 6.29010 6.33471 6.49830 6.68733 6.76501 6.77279 6.85893 6.96605 7.06887 7.17933 7.23446 7.33731 7.44742 7.54641 7.83454 7.98953 8.05252 8.28819 8.48884 8.84852 9.40515 10.86042 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.012472 B = 0.009069 C = 0.005909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.422799 B = 3086.747544 C = 4737.428647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.093 3.907 4 H 0.058 0.942 5 C -0.142 4.142 6 C 0.046 3.954 7 N -0.501 5.501 8 C 0.083 3.917 9 C 0.064 3.936 10 C -0.480 4.480 11 H 0.063 0.937 12 C 0.074 3.926 13 N -0.873 5.873 14 Si 0.867 3.133 15 H -0.279 1.279 16 H -0.281 1.281 17 H -0.266 1.266 18 C -0.204 4.204 19 C -0.193 4.193 20 C 0.097 3.903 21 H 0.063 0.937 22 C 0.482 3.518 23 O -0.483 6.483 24 O -0.525 6.525 25 C -0.098 4.098 26 H 0.041 0.959 27 H 0.082 0.918 28 H 0.038 0.962 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.024 0.976 32 H 0.139 0.861 33 H 0.035 0.965 34 H 0.089 0.911 35 H 0.262 0.738 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.404 0.596 41 H 0.087 0.913 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.244 -7.201 -8.051 11.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.035 3.965 4 H 0.076 0.924 5 C -0.180 4.180 6 C -0.081 4.081 7 N -0.227 5.227 8 C -0.044 4.044 9 C 0.063 3.937 10 C -0.518 4.518 11 H 0.081 0.919 12 C -0.129 4.129 13 N -0.510 5.510 14 Si 0.693 3.307 15 H -0.205 1.205 16 H -0.207 1.207 17 H -0.190 1.190 18 C -0.243 4.243 19 C -0.230 4.230 20 C -0.013 4.013 21 H 0.080 0.920 22 C 0.322 3.678 23 O -0.368 6.368 24 O -0.337 6.337 25 C -0.137 4.137 26 H 0.060 0.940 27 H 0.100 0.900 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.042 0.958 32 H 0.156 0.844 33 H 0.053 0.947 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.262 0.738 41 H 0.105 0.895 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.130 -7.682 -7.593 11.564 hybrid contribution -0.791 0.894 -0.100 1.198 sum -4.921 -6.788 -7.693 11.379 Atomic orbital electron populations 1.22743 0.81538 1.02277 0.99914 1.87881 1.19240 1.28190 1.95153 1.22185 0.93685 0.83913 0.96706 0.92432 1.22221 1.00714 0.99297 0.95751 1.22772 0.87483 0.93295 1.04539 1.61764 1.19406 1.34814 1.06762 1.21893 0.96631 0.89463 0.96384 1.18685 0.85520 0.96423 0.93095 1.20545 1.03095 1.31309 0.96816 0.91928 1.24934 0.98394 0.94434 0.95130 1.69903 1.29863 1.19853 1.31370 0.87016 0.82748 0.79406 0.81521 1.20462 1.20669 1.18996 1.22937 1.07220 0.94058 1.00076 1.22784 1.07236 0.92870 1.00158 1.21105 0.89628 0.98350 0.92230 0.91984 1.23309 0.92300 0.72637 0.79576 1.90727 1.38134 1.42632 1.65273 1.84551 1.39613 1.84242 1.25262 1.21501 0.95880 0.95446 1.00825 0.94031 0.89955 0.94326 0.92100 0.90098 0.95758 0.84397 0.94688 0.89369 0.92738 0.92294 0.90698 0.91329 0.90438 0.73765 0.89474 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.82 101.05 1.09 1.45 16 2 O -0.39 -5.68 10.35 -35.23 -0.36 -6.05 16 3 C 0.09 1.42 2.68 -26.61 -0.07 1.35 16 4 H 0.06 0.82 7.79 -51.93 -0.40 0.42 16 5 C -0.14 -2.47 5.71 -26.65 -0.15 -2.62 16 6 C 0.05 0.94 4.45 -3.84 -0.02 0.92 16 7 N -0.50 -10.51 4.17 -228.08 -0.95 -11.46 16 8 C 0.08 1.94 4.32 -3.82 -0.02 1.92 16 9 C 0.06 1.59 1.93 -155.66 -0.30 1.29 16 10 C -0.48 -12.59 7.31 -34.44 -0.25 -12.84 16 11 H 0.06 1.67 7.89 -52.48 -0.41 1.26 16 12 C 0.07 1.86 3.17 -17.82 -0.06 1.81 16 13 N -0.87 -22.73 11.02 55.43 0.61 -22.12 16 14 Si 0.87 19.51 28.39 -169.99 -4.83 14.69 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 18 C -0.20 -4.88 9.92 -26.69 -0.26 -5.14 16 19 C -0.19 -4.56 9.96 -26.69 -0.27 -4.82 16 20 C 0.10 1.71 2.34 -68.87 -0.16 1.55 16 21 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 22 C 0.48 8.35 6.13 36.00 0.22 8.57 16 23 O -0.48 -9.82 15.81 -18.75 -0.30 -10.12 16 24 O -0.52 -7.07 13.42 -39.26 -0.53 -7.60 16 25 C -0.10 -1.53 5.01 -26.65 -0.13 -1.66 16 26 H 0.04 0.45 7.94 -51.93 -0.41 0.04 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.04 0.38 8.09 -51.93 -0.42 -0.04 16 29 H 0.06 0.98 7.94 -51.93 -0.41 0.57 16 30 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.14 3.22 2.60 -51.93 -0.14 3.09 16 33 H 0.03 0.81 5.59 -51.93 -0.29 0.52 16 34 H 0.09 2.25 5.46 -51.93 -0.28 1.96 16 35 H 0.26 6.55 8.32 -40.82 -0.34 6.21 16 36 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.07 1.79 8.14 -51.93 -0.42 1.36 16 38 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 39 H 0.08 1.84 7.77 -51.93 -0.40 1.44 16 40 H 0.40 3.60 9.10 45.56 0.41 4.01 16 41 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 330.00 15.07 4.97 4.97 Total: -1.00 -29.04 330.00 -7.46 -36.50 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -5.70 Total: 9.41 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -0.38 Total: -8.23 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: -0.34 Total: -33.58 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -1.19 Total: -23.76 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -4.83 Total: 14.69 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.04 -7.46 -36.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606757044.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.115 kcal (2) G-P(sol) polarization free energy of solvation -29.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds