Wall clock time and date at job start Tue Mar 31 2020 06:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46879 * 2 1 4 4 C 1.50695 * 109.47228 * 239.99679 * 2 1 3 5 5 H 1.07999 * 119.99867 * 239.99736 * 4 2 1 6 6 C 1.37876 * 120.00219 * 60.00489 * 4 2 1 7 7 N 1.31518 * 119.99645 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00324 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47007 * 59.99548 * 8 6 4 10 10 H 1.48501 * 109.47209 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47200 * 299.99753 * 8 6 4 12 12 C 1.53005 * 109.47136 * 119.99639 * 2 1 3 13 13 N 1.46502 * 109.47192 * 300.00461 * 12 2 1 14 14 C 1.34775 * 120.00249 * 179.97438 * 13 12 2 15 15 O 1.21586 * 119.99966 * 5.08183 * 14 13 12 16 16 N 1.34769 * 119.99999 * 185.08349 * 14 13 12 17 17 C 1.46221 * 118.62560 * 174.86699 * 16 14 13 18 18 C 1.53207 * 109.63137 * 116.29829 * 17 16 14 19 19 N 1.46921 * 108.93730 * 81.46790 * 18 17 16 20 20 C 1.33631 * 120.62308 * 287.97828 * 19 18 17 21 21 O 1.21281 * 119.76838 * 180.28450 * 20 19 18 22 22 C 1.51192 * 120.46155 * 0.30597 * 20 19 18 23 23 C 1.46157 * 118.73498 * 354.84635 * 16 14 13 24 24 H 1.08998 * 109.47727 * 300.00429 * 1 2 3 25 25 H 1.09001 * 109.47504 * 60.00270 * 1 2 3 26 26 H 1.09002 * 109.47032 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47216 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47015 * 299.99408 * 3 2 1 29 29 H 1.08998 * 109.47243 * 59.99859 * 3 2 1 30 30 H 0.96999 * 119.99855 * 180.02562 * 7 6 4 31 31 H 1.08995 * 109.47002 * 180.02562 * 12 2 1 32 32 H 1.09002 * 109.47075 * 60.00131 * 12 2 1 33 33 H 0.97007 * 119.99887 * 0.02562 * 13 12 2 34 34 H 1.09004 * 109.63318 * 356.14475 * 17 16 14 35 35 H 1.09002 * 109.31402 * 236.25227 * 17 16 14 36 36 H 1.09006 * 109.58123 * 321.59555 * 18 17 16 37 37 H 1.09000 * 109.58021 * 201.33529 * 18 17 16 38 38 H 0.96997 * 119.68894 * 107.94998 * 19 18 17 39 39 H 1.09001 * 109.61624 * 190.97516 * 22 20 19 40 40 H 1.09004 * 109.60763 * 311.31658 * 22 20 19 41 41 H 1.09006 * 109.46450 * 123.67080 * 23 16 14 42 42 H 1.08996 * 109.46345 * 3.70585 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.8282 -2.5199 -4.0080 10 1 1.8271 -0.4200 -5.2204 11 1 3.8076 -1.1191 -4.0076 12 6 2.0400 -0.7212 1.2493 13 7 1.5515 -0.0306 2.4455 14 6 1.8767 -0.4912 3.6696 15 8 2.6494 -1.4231 3.7830 16 7 1.3453 0.0810 4.7680 17 6 1.6281 -0.5130 6.0738 18 6 2.4198 0.4802 6.9305 19 7 1.4857 1.4415 7.5320 20 6 0.8977 2.3791 6.7831 21 8 0.1331 3.1681 7.2967 22 6 1.1786 2.4629 5.2999 23 6 0.5104 1.2698 4.6069 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6765 1.9564 0.8899 30 1 0.7083 1.1608 -3.4844 31 1 3.1299 -0.7208 1.2495 32 1 1.6766 -1.7489 1.2494 33 1 0.9935 0.7579 2.3564 34 1 2.2114 -1.4245 5.9430 35 1 0.6887 -0.7530 6.5718 36 1 3.1378 1.0109 6.3051 37 1 2.9485 -0.0570 7.7180 38 1 1.2936 1.3949 8.4817 39 1 0.7710 3.3923 4.9022 40 1 2.2548 2.4329 5.1291 41 1 -0.4671 1.0906 5.0547 42 1 0.3892 1.4874 3.5458 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001636028894.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:19 Heat of formation + Delta-G solvation = -56.892804 kcal Electronic energy + Delta-G solvation = -23356.751499 eV Core-core repulsion = 19951.191322 eV Total energy + Delta-G solvation = -3405.560178 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.78825 -39.44680 -36.93812 -36.11200 -34.80001 -33.28545 -31.71371 -30.88305 -28.62640 -25.75445 -25.66008 -25.01387 -24.79332 -22.91825 -20.28362 -19.67452 -19.02553 -18.19603 -17.37235 -16.91463 -16.16664 -15.82608 -15.58322 -14.81772 -14.69422 -14.33330 -14.27154 -13.69453 -13.43754 -13.01610 -12.89661 -12.76572 -12.51203 -12.35263 -12.20677 -11.83060 -11.67375 -11.41374 -11.20687 -10.86762 -10.74009 -10.41207 -10.22777 -10.05999 -9.81851 -9.66172 -9.57249 -9.33603 -8.82734 -8.82370 -8.42662 -8.23911 -6.03567 -4.13708 2.38072 2.76431 3.02020 3.29349 3.33880 3.37446 3.44027 4.05289 4.28752 4.40941 4.67795 4.75112 4.79247 4.86818 4.99087 5.05364 5.23290 5.44986 5.49828 5.67467 5.68978 6.13235 6.32679 6.44979 6.47271 6.50811 6.74430 6.78551 6.84620 6.95902 6.99970 7.01854 7.10488 7.34465 7.53339 7.67985 7.96890 7.98762 8.09340 8.27632 8.37592 8.84219 8.90359 9.52200 10.97839 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.033705 B = 0.003775 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.546563 B = 7414.770104 C = 7942.735809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.148 3.852 13 N -0.732 5.732 14 C 0.697 3.303 15 O -0.594 6.594 16 N -0.636 5.636 17 C 0.109 3.891 18 C 0.091 3.909 19 N -0.725 5.725 20 C 0.520 3.480 21 O -0.552 6.552 22 C -0.159 4.159 23 C 0.120 3.880 24 H 0.004 0.996 25 H 0.085 0.915 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.085 0.915 29 H 0.004 0.996 30 H 0.260 0.740 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.394 0.606 34 H 0.112 0.888 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.400 0.600 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.075 0.925 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.300 1.631 16.315 16.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.025 3.975 13 N -0.389 5.389 14 C 0.398 3.602 15 O -0.473 6.473 16 N -0.375 5.375 17 C -0.016 4.016 18 C -0.035 4.035 19 N -0.378 5.378 20 C 0.307 3.693 21 O -0.430 6.430 22 C -0.200 4.200 23 C -0.004 4.004 24 H 0.023 0.977 25 H 0.104 0.896 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.104 0.896 29 H 0.023 0.977 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.232 0.768 34 H 0.130 0.870 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.116 0.884 38 H 0.236 0.764 39 H 0.129 0.871 40 H 0.115 0.885 41 H 0.094 0.906 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.410 1.474 16.252 16.323 hybrid contribution 0.031 -0.102 -0.502 0.513 sum 0.441 1.372 15.750 15.815 Atomic orbital electron populations 1.21823 0.97774 0.99176 0.99954 1.18366 0.92783 0.92795 0.90562 1.21819 0.98616 0.98316 0.99945 1.20933 1.31585 1.12149 0.89841 0.92449 1.24871 0.94836 0.94911 0.98831 1.69791 1.36567 1.22729 1.23351 0.86628 0.79240 0.79788 0.82170 1.20289 1.21347 1.20275 1.21628 0.98072 0.95374 0.82416 1.45796 1.55444 1.32982 1.04681 1.16103 0.80774 0.82411 0.80911 1.90872 1.39033 1.31734 1.85630 1.47082 1.54020 1.30384 1.06043 1.21795 1.00546 0.97165 0.82044 1.22258 0.91835 0.91116 0.98281 1.45985 1.46508 1.33026 1.12291 1.20575 0.79383 0.79636 0.89719 1.90758 1.36370 1.41299 1.74547 1.22465 1.04129 1.01555 0.91879 1.21355 0.93843 0.83457 1.01770 0.97720 0.89587 0.95418 0.95397 0.89600 0.97711 0.92939 0.92760 0.92932 0.76804 0.87027 0.91146 0.89915 0.88381 0.76430 0.87096 0.88464 0.90628 0.88556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 8.08 37.16 0.30 -2.53 16 2 C 0.06 1.25 0.50 -155.66 -0.08 1.17 16 3 C -0.13 -2.82 8.08 37.16 0.30 -2.51 16 4 C -0.51 -12.98 8.01 -34.44 -0.28 -13.25 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.15 9.35 55.43 0.52 -22.64 16 8 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 C 0.15 3.05 4.51 -4.04 -0.02 3.03 16 13 N -0.73 -12.46 4.85 -65.23 -0.32 -12.78 16 14 C 0.70 11.46 8.22 -86.93 -0.71 10.75 16 15 O -0.59 -11.78 15.57 5.29 0.08 -11.70 16 16 N -0.64 -7.70 2.77 -179.60 -0.50 -8.19 16 17 C 0.11 1.04 6.18 -4.09 -0.03 1.02 16 18 C 0.09 0.65 6.48 -3.71 -0.02 0.63 16 19 N -0.73 -5.91 5.30 -60.00 -0.32 -6.23 16 20 C 0.52 5.73 7.11 -11.25 -0.08 5.65 16 21 O -0.55 -8.25 17.91 5.56 0.10 -8.15 16 22 C -0.16 -1.52 5.60 -27.48 -0.15 -1.68 16 23 C 0.12 1.24 6.09 -4.07 -0.02 1.21 16 24 H 0.00 0.07 6.86 -51.93 -0.36 -0.28 16 25 H 0.09 2.09 6.07 -51.93 -0.32 1.78 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 2.08 6.07 -51.93 -0.32 1.77 16 29 H 0.00 0.07 6.86 -51.93 -0.36 -0.28 16 30 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 31 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.39 6.05 3.43 -40.82 -0.14 5.91 16 34 H 0.11 1.21 6.81 -51.93 -0.35 0.85 16 35 H 0.07 0.61 8.11 -51.93 -0.42 0.19 16 36 H 0.08 0.67 7.03 -51.93 -0.37 0.31 16 37 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.40 2.72 8.91 -40.82 -0.36 2.36 16 39 H 0.11 0.99 8.13 -51.93 -0.42 0.57 16 40 H 0.10 0.90 7.09 -51.93 -0.37 0.53 16 41 H 0.08 0.75 7.95 -51.93 -0.41 0.33 16 42 H 0.10 1.00 5.29 -51.93 -0.27 0.73 16 LS Contribution 325.98 15.07 4.91 4.91 Total: -1.00 -30.78 325.98 -7.55 -38.32 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -6.12 Total: 5.95 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -0.89 Total: 5.11 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -0.61 Total: -49.84 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: 0.18 Total: -19.85 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.78 -7.55 -38.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001636028894.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.570 kcal (2) G-P(sol) polarization free energy of solvation -30.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds