Wall clock time and date at job start Tue Mar 31 2020 06:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36169 * 119.45484 * 2 1 4 4 C 1.40517 * 119.96139 * 180.02562 * 3 2 1 5 5 C 1.40573 * 121.19795 * 180.02562 * 4 3 2 6 6 C 1.36092 * 119.66282 * 179.97438 * 5 4 3 7 7 C 1.39349 * 120.97590 * 0.04906 * 6 5 4 8 8 C 1.36165 * 120.95589 * 359.97394 * 7 6 5 9 9 C 1.40348 * 119.67362 * 0.02562 * 8 7 6 10 10 C 1.41143 * 121.26270 * 180.02562 * 9 8 7 11 11 N 1.39317 * 120.30327 * 359.97438 * 10 9 8 12 12 C 1.46502 * 120.00234 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47259 * 179.97438 * 12 11 10 14 14 H 1.08991 * 109.47101 * 305.00178 * 13 12 11 15 15 C 1.53002 * 109.46876 * 65.00017 * 13 12 11 16 16 C 1.52995 * 109.47146 * 184.99762 * 13 12 11 17 17 C 1.50702 * 109.47161 * 175.00006 * 16 13 12 18 18 H 1.08001 * 119.99611 * 0.02562 * 17 16 13 19 19 C 1.37877 * 120.00107 * 180.02562 * 17 16 13 20 20 N 1.31514 * 120.00134 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99945 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.46980 * 89.99828 * 21 19 17 23 23 H 1.48498 * 109.47150 * 209.99961 * 21 19 17 24 24 H 1.48504 * 109.46916 * 329.99756 * 21 19 17 25 25 C 1.37886 * 119.39519 * 179.97438 * 10 9 8 26 26 H 1.09002 * 109.47428 * 90.00092 * 1 2 3 27 27 H 1.09008 * 109.47414 * 209.99777 * 1 2 3 28 28 H 1.08998 * 109.47347 * 329.99804 * 1 2 3 29 29 H 1.08001 * 120.01911 * 0.02562 * 3 2 1 30 30 H 1.08001 * 120.16919 * 359.97438 * 5 4 3 31 31 H 1.08004 * 119.51845 * 180.02562 * 6 5 4 32 32 H 1.07997 * 119.52253 * 180.25169 * 7 6 5 33 33 H 1.08001 * 120.16064 * 180.02562 * 8 7 6 34 34 H 0.97002 * 119.99901 * 359.97438 * 11 10 9 35 35 H 1.09000 * 109.46514 * 299.99927 * 12 11 10 36 36 H 1.09003 * 109.46774 * 59.99681 * 12 11 10 37 37 H 1.09000 * 109.47056 * 180.02562 * 15 13 12 38 38 H 1.09002 * 109.47328 * 299.99720 * 15 13 12 39 39 H 1.08999 * 109.47452 * 60.00146 * 15 13 12 40 40 H 1.08999 * 109.47335 * 295.00256 * 16 13 12 41 41 H 1.08997 * 109.47314 * 55.00112 * 16 13 12 42 42 H 0.96995 * 120.00016 * 179.97438 * 20 19 17 43 43 H 1.07993 * 119.62846 * 179.97438 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1766 1.1857 0.0000 4 6 3.5817 1.1981 -0.0005 5 6 4.2992 2.4069 0.0000 6 6 5.6599 2.3825 0.0000 7 6 6.3556 1.1751 -0.0016 8 6 5.6934 -0.0147 -0.0026 9 6 4.2900 -0.0289 -0.0026 10 6 3.5697 -1.2427 -0.0031 11 7 4.2454 -2.4610 -0.0042 12 6 3.4911 -3.7170 -0.0041 13 6 4.4651 -4.8969 -0.0060 14 1 5.1500 -4.8012 -0.8484 15 6 5.2614 -4.9028 1.3005 16 6 3.6815 -6.2049 -0.1316 17 6 4.6445 -7.3573 -0.2569 18 1 5.7089 -7.1750 -0.2475 19 6 4.1666 -8.6444 -0.3837 20 7 5.0069 -9.6501 -0.4926 21 14 2.3254 -8.9596 -0.4007 22 1 1.8262 -8.9017 -1.7981 23 1 2.0478 -10.3026 0.1689 24 1 1.6385 -7.9250 0.4136 25 6 2.1912 -1.2116 -0.0026 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.6280 2.1160 0.0004 30 1 3.7733 3.3503 0.0004 31 1 6.2089 3.3126 0.0008 32 1 7.4355 1.1831 0.0025 33 1 6.2455 -0.9430 -0.0034 34 1 5.2152 -2.4778 -0.0049 35 1 2.8643 -3.7642 0.8864 36 1 2.8628 -3.7635 -0.8936 37 1 5.9557 -5.7431 1.2990 38 1 5.8198 -3.9710 1.3900 39 1 4.5766 -4.9985 2.1430 40 1 3.0620 -6.3438 0.7544 41 1 3.0463 -6.1643 -1.0164 42 1 4.6707 -10.5556 -0.5814 43 1 1.6363 -2.1381 -0.0034 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664765720.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:51 Heat of formation + Delta-G solvation = 19.177987 kcal Electronic energy + Delta-G solvation = -21255.843610 eV Core-core repulsion = 18264.431373 eV Total energy + Delta-G solvation = -2991.412238 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.49445 -37.57029 -36.48273 -34.59112 -32.39102 -31.51713 -31.03329 -28.83661 -27.51377 -26.85849 -25.84033 -23.31459 -22.40675 -21.99891 -20.86068 -19.41341 -17.48714 -17.26293 -16.76135 -16.17506 -15.34373 -14.99170 -14.70300 -14.22875 -14.05193 -13.96706 -13.88954 -13.27567 -13.17444 -13.05999 -12.68147 -12.55002 -12.31402 -12.11581 -11.92933 -11.79897 -11.28528 -11.09377 -10.97397 -10.88333 -10.79698 -10.52508 -10.25461 -10.01833 -9.79451 -9.67661 -9.17961 -8.85144 -8.58432 -8.47743 -6.96131 -6.08801 -4.07062 0.71182 1.05920 2.19227 3.06314 3.27297 3.35317 3.37738 3.51647 4.17974 4.40861 4.64096 4.76369 4.85949 4.92685 5.16863 5.24167 5.25347 5.32101 5.38936 5.41459 5.50697 5.55924 5.56868 5.67655 5.75844 5.82909 5.99127 5.99819 6.03577 6.13686 6.23993 6.26424 6.32766 6.46002 6.48945 6.61890 6.73195 6.77277 6.85369 6.94098 7.02254 7.13412 7.32302 7.42347 7.72863 7.79390 8.47999 8.95237 9.53294 11.04391 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.022257 B = 0.003580 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.720133 B = 7819.932830 C = 8935.383010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.019 4.019 3 C -0.191 4.191 4 C -0.002 4.002 5 C -0.124 4.124 6 C -0.106 4.106 7 C -0.142 4.142 8 C -0.086 4.086 9 C -0.107 4.107 10 C 0.244 3.756 11 N -0.730 5.730 12 C 0.122 3.878 13 C -0.088 4.088 14 H 0.068 0.932 15 C -0.134 4.134 16 C -0.006 4.006 17 C -0.517 4.517 18 H 0.074 0.926 19 C 0.067 3.933 20 N -0.903 5.903 21 Si 0.878 3.122 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.265 1.265 25 C -0.228 4.228 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.399 0.601 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.032 0.968 39 H 0.047 0.953 40 H 0.019 0.981 41 H 0.013 0.987 42 H 0.263 0.737 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.826 23.362 1.592 23.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.020 4.020 3 C -0.212 4.212 4 C -0.002 4.002 5 C -0.142 4.142 6 C -0.125 4.125 7 C -0.161 4.161 8 C -0.105 4.105 9 C -0.109 4.109 10 C 0.136 3.864 11 N -0.355 5.355 12 C -0.002 4.002 13 C -0.107 4.107 14 H 0.087 0.913 15 C -0.191 4.191 16 C -0.043 4.043 17 C -0.555 4.555 18 H 0.092 0.908 19 C -0.135 4.135 20 N -0.542 5.542 21 Si 0.705 3.295 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.190 1.190 25 C -0.253 4.253 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.135 0.865 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.235 0.765 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.051 0.949 39 H 0.066 0.934 40 H 0.037 0.963 41 H 0.031 0.969 42 H 0.073 0.927 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.916 22.935 1.579 23.320 hybrid contribution -0.495 -0.421 -0.067 0.653 sum -4.411 22.514 1.512 22.992 Atomic orbital electron populations 1.20849 0.91611 1.02600 1.02268 1.19267 0.95551 0.92456 0.94729 1.20436 0.92382 0.97444 1.10897 1.17805 0.93441 0.91930 0.97068 1.20947 0.94238 0.96887 1.02110 1.20802 0.94448 0.97836 0.99370 1.20684 0.99809 0.92347 1.03247 1.20821 0.92998 0.98254 0.98404 1.17707 0.93245 0.91875 1.08122 1.17829 0.91715 0.85113 0.91717 1.44988 1.08661 1.02813 1.79080 1.21721 0.95172 0.82402 1.00874 1.21257 0.96889 0.94158 0.98374 0.91339 1.21738 1.00140 1.00393 0.96871 1.19559 0.96085 0.92254 0.96439 1.21073 0.94432 0.89824 1.50199 0.90829 1.25019 0.97636 0.96214 0.94592 1.69904 1.34398 0.99372 1.50497 0.86807 0.86343 0.77631 0.78673 1.20296 1.21393 1.19000 1.20316 0.91864 0.98078 1.15063 0.91127 0.91520 0.91682 0.86453 0.85917 0.86398 0.86309 0.86318 0.76508 0.92245 0.92234 0.91127 0.94945 0.93415 0.96317 0.96874 0.92705 0.85987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.98 36.01 0.36 -0.74 16 2 C -0.02 -0.24 5.84 -105.03 -0.61 -0.85 16 3 C -0.19 -2.30 9.35 -39.47 -0.37 -2.67 16 4 C 0.00 -0.02 5.74 -106.85 -0.61 -0.64 16 5 C -0.12 -1.34 9.77 -39.47 -0.39 -1.72 16 6 C -0.11 -1.07 9.95 -39.94 -0.40 -1.47 16 7 C -0.14 -1.52 9.95 -39.91 -0.40 -1.92 16 8 C -0.09 -1.05 9.50 -39.53 -0.38 -1.42 16 9 C -0.11 -1.46 5.75 -106.69 -0.61 -2.07 16 10 C 0.24 3.48 6.67 -83.49 -0.56 2.92 16 11 N -0.73 -10.27 5.39 -58.39 -0.31 -10.58 16 12 C 0.12 1.89 4.30 -4.04 -0.02 1.87 16 13 C -0.09 -1.60 2.37 -90.62 -0.22 -1.82 16 14 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 15 C -0.13 -2.33 8.88 37.16 0.33 -2.00 16 16 C -0.01 -0.12 3.52 -27.88 -0.10 -0.22 16 17 C -0.52 -14.12 8.96 -34.44 -0.31 -14.43 16 18 H 0.07 2.15 7.30 -52.49 -0.38 1.77 16 19 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 20 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 21 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 25 C -0.23 -3.15 8.92 -39.37 -0.35 -3.50 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.61 8.08 -51.92 -0.42 0.19 16 28 H 0.06 0.52 8.07 -51.93 -0.42 0.10 16 29 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 32 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 33 H 0.12 1.29 6.44 -52.49 -0.34 0.95 16 34 H 0.40 5.21 5.76 -40.82 -0.24 4.97 16 35 H 0.06 0.92 7.94 -51.93 -0.41 0.50 16 36 H 0.06 0.93 7.94 -51.93 -0.41 0.51 16 37 H 0.07 1.38 6.95 -51.93 -0.36 1.02 16 38 H 0.03 0.47 7.18 -51.93 -0.37 0.10 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 41 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 42 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.12 1.64 6.69 -52.49 -0.35 1.29 16 LS Contribution 344.55 15.07 5.19 5.19 Total: -1.00 -30.15 344.55 -10.34 -40.48 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -6.60 Total: 3.78 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: -4.72 Total: -28.88 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.46 Total: -37.17 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.15 -10.34 -40.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664765720.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.659 kcal (2) G-P(sol) polarization free energy of solvation -30.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds