Wall clock time and date at job start Tue Mar 31 2020 06:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21287 * 120.00009 * 2 1 4 4 N 1.34780 * 120.00303 * 179.97438 * 2 1 3 5 5 C 1.47026 * 125.64285 * 359.97438 * 4 2 1 6 6 C 1.54321 * 107.26791 * 181.07596 * 5 4 2 7 7 C 1.55448 * 102.96961 * 22.19024 * 6 5 4 8 8 H 1.09004 * 111.00873 * 82.52495 * 7 6 5 9 9 C 1.53000 * 111.11787 * 206.45980 * 7 6 5 10 10 N 1.46498 * 109.47104 * 178.55841 * 9 7 6 11 11 C 1.46502 * 120.00254 * 90.00159 * 10 9 7 12 12 C 1.34776 * 119.99920 * 270.00581 * 10 9 7 13 13 O 1.21589 * 120.00261 * 359.97438 * 12 10 9 14 14 N 1.34782 * 120.00123 * 179.97438 * 12 10 9 15 15 C 1.46495 * 119.99926 * 179.97438 * 14 12 10 16 16 C 1.50702 * 109.47233 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99643 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00562 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00011 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00341 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47201 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47300 * 119.99864 * 20 18 16 23 23 H 1.48503 * 109.47054 * 239.99831 * 20 18 16 24 24 C 1.47419 * 125.65139 * 179.97438 * 4 2 1 25 25 H 1.08999 * 109.47179 * 240.00007 * 1 2 3 26 26 H 1.09001 * 109.47416 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47049 * 120.00125 * 1 2 3 28 28 H 1.08998 * 109.88266 * 300.48971 * 5 4 2 29 29 H 1.08997 * 109.88244 * 61.50329 * 5 4 2 30 30 H 1.08998 * 110.71927 * 140.55469 * 6 5 4 31 31 H 1.08998 * 110.72073 * 263.64892 * 6 5 4 32 32 H 1.08997 * 109.47187 * 298.56182 * 9 7 6 33 33 H 1.09005 * 109.46878 * 58.56044 * 9 7 6 34 34 H 1.09000 * 109.46491 * 90.00257 * 11 10 9 35 35 H 1.08999 * 109.47153 * 210.00274 * 11 10 9 36 36 H 1.08998 * 109.46713 * 330.00278 * 11 10 9 37 37 H 0.96995 * 119.99616 * 0.02562 * 14 12 10 38 38 H 1.09004 * 109.47630 * 300.00251 * 15 14 12 39 39 H 1.08998 * 109.47165 * 60.00532 * 15 14 12 40 40 H 0.96997 * 120.00726 * 180.02562 * 19 18 16 41 41 H 1.09002 * 110.36926 * 274.69484 * 24 4 2 42 42 H 1.08995 * 110.36556 * 36.90768 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5746 -2.5066 0.0017 6 6 2.7280 -3.5315 0.0296 7 6 3.9108 -2.7099 0.6147 8 1 3.8611 -2.6740 1.7030 9 6 5.2557 -3.2702 0.1475 10 7 6.3415 -2.4504 0.6907 11 6 6.9317 -2.7835 1.9895 12 6 6.7974 -1.3896 -0.0045 13 8 6.3079 -1.1133 -1.0826 14 7 7.7961 -0.6350 0.4954 15 6 8.2920 0.5177 -0.2605 16 6 9.4004 1.1857 0.5118 17 1 9.7052 0.7908 1.4697 18 6 10.0254 2.3010 -0.0044 19 7 9.6546 2.7816 -1.1711 20 14 11.3997 3.1285 0.9526 21 1 11.6254 2.3985 2.2259 22 1 12.6453 3.1118 0.1444 23 1 11.0205 4.5335 1.2485 24 6 3.6480 -1.3123 0.0001 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3634 1.0276 0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 0.9483 -2.6293 0.8853 29 1 0.9759 -2.6433 -0.8988 30 1 2.4825 -4.3707 0.6804 31 1 2.9583 -3.8805 -0.9770 32 1 5.3638 -4.2961 0.4996 33 1 5.2976 -3.2535 -0.9416 34 1 7.7669 -3.4686 1.8440 35 1 7.2883 -1.8729 2.4709 36 1 6.1789 -3.2569 2.6199 37 1 8.1868 -0.8556 1.3553 38 1 8.6727 0.1830 -1.2255 39 1 7.4791 1.2268 -0.4167 40 1 10.0945 3.5660 -1.5345 41 1 4.0334 -1.2671 -1.0186 42 1 4.1061 -0.5361 0.6130 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680659701.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:59 Heat of formation + Delta-G solvation = -61.939763 kcal Electronic energy + Delta-G solvation = -22908.202022 eV Core-core repulsion = 19502.422992 eV Total energy + Delta-G solvation = -3405.779030 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.18723 -39.30578 -37.46267 -35.18251 -34.17341 -32.65132 -31.91701 -29.88098 -29.37151 -27.21392 -26.70991 -25.15007 -23.21427 -22.19668 -20.53108 -19.34043 -19.16867 -18.01706 -16.99423 -16.45223 -15.95305 -15.75160 -15.32307 -15.06360 -14.65603 -14.46277 -13.81956 -13.58172 -13.22921 -13.07903 -12.99230 -12.88439 -12.59896 -12.45969 -12.32155 -12.06576 -11.92180 -11.85261 -11.56150 -11.43927 -10.93690 -10.88612 -10.85262 -10.74860 -10.24016 -9.79960 -9.32335 -9.28602 -8.68480 -8.58281 -8.38017 -7.68889 -6.09573 -4.16099 2.69988 3.03557 3.18780 3.28044 3.35099 3.38262 3.92535 4.31796 4.37885 4.42860 4.66662 4.74288 4.88782 5.02573 5.11549 5.20452 5.22907 5.26505 5.27453 5.29698 5.40654 5.46287 5.58599 5.66934 5.68341 5.78580 5.80668 5.93139 6.17467 6.29012 6.41655 6.77127 7.16006 7.56672 7.57161 7.58760 7.64721 7.89759 8.07723 8.23912 8.81286 8.95152 9.36878 9.53022 11.00758 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.018769 B = 0.004071 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.498724 B = 6875.852040 C = 7909.188880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.518 3.482 3 O -0.538 6.538 4 N -0.624 5.624 5 C 0.103 3.897 6 C -0.125 4.125 7 C -0.118 4.118 8 H 0.081 0.919 9 C 0.148 3.852 10 N -0.645 5.645 11 C 0.083 3.917 12 C 0.693 3.307 13 O -0.593 6.593 14 N -0.728 5.728 15 C 0.266 3.734 16 C -0.541 4.541 17 H 0.062 0.938 18 C 0.064 3.936 19 N -0.884 5.884 20 Si 0.903 3.097 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.115 3.885 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.386 0.614 38 H 0.024 0.976 39 H 0.025 0.975 40 H 0.265 0.735 41 H 0.089 0.911 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.186 -16.741 6.324 24.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.307 3.693 3 O -0.415 6.415 4 N -0.359 5.359 5 C -0.020 4.020 6 C -0.163 4.163 7 C -0.139 4.139 8 H 0.100 0.900 9 C 0.024 3.976 10 N -0.384 5.384 11 C -0.061 4.061 12 C 0.394 3.606 13 O -0.472 6.472 14 N -0.381 5.381 15 C 0.145 3.855 16 C -0.579 4.579 17 H 0.080 0.920 18 C -0.140 4.140 19 N -0.522 5.522 20 Si 0.730 3.270 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.007 4.007 25 H 0.102 0.898 26 H 0.109 0.891 27 H 0.103 0.897 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.220 0.780 38 H 0.042 0.958 39 H 0.043 0.957 40 H 0.075 0.925 41 H 0.107 0.893 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.184 -15.674 5.372 23.162 hybrid contribution 0.895 0.328 1.004 1.385 sum -15.289 -15.346 6.376 22.581 Atomic orbital electron populations 1.21885 0.91767 1.05227 1.03786 1.20479 0.90242 0.82292 0.76312 1.90795 1.70726 1.30557 1.49397 1.48649 1.08159 1.05469 1.73661 1.21985 0.96304 0.82345 1.01387 1.22681 0.94028 0.97178 1.02419 1.22910 0.95137 0.95332 1.00511 0.90043 1.21108 0.83552 0.92747 1.00240 1.47072 1.38956 1.31115 1.21277 1.21634 0.98292 1.01188 0.84938 1.16100 0.80981 0.79581 0.83894 1.90853 1.62012 1.72453 1.21868 1.45860 1.36509 1.31716 1.24003 1.18988 0.93856 0.81217 0.91473 1.21249 1.18564 1.12620 1.05510 0.92020 1.24939 0.97333 0.96690 0.95041 1.69991 1.41464 1.23362 1.17363 0.86373 0.81472 0.79337 0.79773 1.19692 1.20832 1.20814 1.22402 0.78866 0.96453 1.02967 0.89766 0.89084 0.89661 0.91624 0.91432 0.89940 0.90049 0.90569 0.89520 0.93050 0.91335 0.91589 0.78025 0.95766 0.95659 0.92542 0.89269 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 9.51 36.00 0.34 -1.19 16 2 C 0.52 7.82 7.96 -10.98 -0.09 7.73 16 3 O -0.54 -11.28 17.34 5.55 0.10 -11.18 16 4 N -0.62 -8.44 3.33 -170.52 -0.57 -9.00 16 5 C 0.10 0.87 6.49 -3.06 -0.02 0.85 16 6 C -0.12 -0.95 6.43 -24.74 -0.16 -1.11 16 7 C -0.12 -1.31 3.30 -88.31 -0.29 -1.60 16 8 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 9 C 0.15 1.75 5.03 -4.04 -0.02 1.73 16 10 N -0.64 -9.63 2.83 -187.35 -0.53 -10.16 16 11 C 0.08 0.93 10.20 59.85 0.61 1.54 16 12 C 0.69 14.44 7.70 -86.91 -0.67 13.77 16 13 O -0.59 -14.53 13.77 5.29 0.07 -14.46 16 14 N -0.73 -16.15 5.41 -66.41 -0.36 -16.51 16 15 C 0.27 7.37 5.43 -5.20 -0.03 7.34 16 16 C -0.54 -15.17 9.28 -34.44 -0.32 -15.49 16 17 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 18 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 19 N -0.88 -26.90 13.29 55.43 0.74 -26.17 16 20 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C 0.11 1.83 4.99 -2.53 -0.01 1.82 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.09 0.85 8.12 -51.93 -0.42 0.42 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.60 8.05 -51.93 -0.42 0.18 16 32 H 0.08 0.65 8.07 -51.93 -0.42 0.23 16 33 H 0.09 1.19 7.38 -51.93 -0.38 0.80 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.81 6.36 -51.93 -0.33 0.48 16 36 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 37 H 0.39 7.43 6.05 -40.82 -0.25 7.18 16 38 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.09 1.70 6.57 -51.93 -0.34 1.36 16 42 H 0.07 1.46 8.02 -51.93 -0.42 1.04 16 LS Contribution 344.48 15.07 5.19 5.19 Total: -1.00 -37.40 344.48 -7.87 -45.27 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -6.73 Total: 3.53 kcal Atomic # 6 Polarization: 17.86 SS G_CDS: -0.75 Total: 17.11 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: -0.72 Total: -61.85 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: 0.17 Total: -25.65 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -37.40 -7.87 -45.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680659701.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.674 kcal (2) G-P(sol) polarization free energy of solvation -37.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds