Wall clock time and date at job start Tue Mar 31 2020 06:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 120.00021 * 2 1 4 4 C 1.34774 * 119.99837 * 179.97438 * 2 1 3 5 5 O 1.21285 * 119.99868 * 5.39448 * 4 2 1 6 6 C 1.50702 * 119.99976 * 185.38781 * 4 2 1 7 7 H 1.09000 * 110.91463 * 29.21838 * 6 4 2 8 8 C 1.55160 * 111.00148 * 153.11908 * 6 4 2 9 9 C 1.54334 * 103.01853 * 153.38504 * 8 6 4 10 10 N 1.47025 * 107.26692 * 338.13833 * 9 8 6 11 11 C 1.34769 * 125.65059 * 178.85751 * 10 9 8 12 12 O 1.21583 * 120.00240 * 179.69061 * 11 10 9 13 13 N 1.34783 * 120.00090 * 359.68497 * 11 10 9 14 14 C 1.46500 * 120.00074 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.46838 * 180.02562 * 14 13 11 16 16 C 1.50701 * 109.46900 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00151 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00059 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99776 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00196 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46975 * 60.00186 * 20 18 16 22 22 H 1.48502 * 109.47314 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47482 * 300.00348 * 20 18 16 24 24 C 1.47428 * 108.70274 * 358.58406 * 10 9 8 25 25 H 1.09005 * 109.47551 * 270.00178 * 1 2 3 26 26 H 1.09003 * 109.47175 * 30.00370 * 1 2 3 27 27 H 1.09000 * 109.47746 * 150.00004 * 1 2 3 28 28 H 1.09006 * 109.46984 * 185.21650 * 3 2 1 29 29 H 1.08997 * 109.46934 * 305.21151 * 3 2 1 30 30 H 1.08995 * 109.47387 * 65.21551 * 3 2 1 31 31 H 1.08998 * 110.71439 * 271.93675 * 8 6 4 32 32 H 1.08995 * 110.72368 * 35.03761 * 8 6 4 33 33 H 1.09001 * 109.98813 * 218.66685 * 9 8 6 34 34 H 1.08998 * 109.78484 * 97.49357 * 9 8 6 35 35 H 0.96997 * 119.99758 * 0.02562 * 13 11 10 36 36 H 1.08994 * 109.47573 * 59.99782 * 14 13 11 37 37 H 1.09008 * 109.46826 * 299.99726 * 14 13 11 38 38 H 1.08994 * 109.47544 * 59.99363 * 15 14 13 39 39 H 1.09008 * 109.46861 * 299.99304 * 15 14 13 40 40 H 0.97006 * 119.99782 * 180.02562 * 19 18 16 41 41 H 1.09003 * 110.36412 * 143.19141 * 24 10 9 42 42 H 1.08998 * 110.37085 * 265.41429 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 0.0005 5 8 1.5363 -2.2152 -0.0978 6 6 3.6408 -1.1701 0.1231 7 1 3.9865 -0.3062 0.6909 8 6 4.1442 -2.4922 0.7603 9 6 5.5742 -2.6277 0.1958 10 7 5.6373 -1.8208 -1.0316 11 6 6.7250 -1.6598 -1.8108 12 8 6.6602 -0.9707 -2.8104 13 7 7.8848 -2.2626 -1.4819 14 6 9.0674 -2.0871 -2.3287 15 6 10.2398 -2.8712 -1.7360 16 6 11.4561 -2.6913 -2.6074 17 1 11.3985 -2.0793 -3.4953 18 6 12.6425 -3.3080 -2.2710 19 7 12.7128 -4.0529 -1.1894 20 14 14.1500 -3.0855 -3.3514 21 1 14.5016 -1.6444 -3.4198 22 1 15.2880 -3.8465 -2.7761 23 1 13.8586 -3.5893 -4.7177 24 6 4.3117 -1.2221 -1.2723 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3634 -0.8899 -0.5138 28 1 3.2655 1.0717 -0.0934 29 1 1.8660 1.8796 -0.8396 30 1 2.0061 1.7988 0.9330 31 1 4.1620 -2.4140 1.8473 32 1 3.5252 -3.3322 0.4455 33 1 5.7861 -3.6716 -0.0356 34 1 6.2949 -2.2534 0.9229 35 1 7.9365 -2.8125 -0.6846 36 1 9.3252 -1.0293 -2.3781 37 1 8.8539 -2.4563 -3.3319 38 1 9.9817 -3.9290 -1.6869 39 1 10.4534 -2.5024 -0.7327 40 1 13.5476 -4.4865 -0.9525 41 1 4.4179 -0.2167 -1.6799 42 1 3.7310 -1.8466 -1.9512 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001681527321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:09 Heat of formation + Delta-G solvation = -62.090920 kcal Electronic energy + Delta-G solvation = -22149.067561 eV Core-core repulsion = 18743.281976 eV Total energy + Delta-G solvation = -3405.785585 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.78537 -39.55215 -37.24394 -35.91794 -34.80514 -32.91179 -31.91598 -29.73653 -29.42531 -28.17684 -26.55506 -24.95885 -23.45281 -22.12652 -20.95900 -19.73884 -19.34867 -17.93308 -17.85542 -16.42393 -16.36860 -16.07294 -15.63965 -15.37411 -14.69480 -14.50632 -14.08110 -13.77188 -13.68061 -13.44413 -13.26646 -13.03993 -12.96996 -12.78106 -12.53302 -12.41425 -12.25740 -11.83385 -11.51052 -11.17731 -11.04717 -11.00690 -10.63988 -10.30623 -10.19076 -9.94513 -9.55191 -9.26942 -9.12747 -8.75526 -8.45190 -8.20366 -6.08033 -4.10710 2.16665 2.51733 2.89761 3.32390 3.36066 3.39669 3.53101 4.04383 4.12169 4.38657 4.40248 4.55644 4.56991 4.79770 4.89942 4.93701 5.01720 5.03853 5.17626 5.26975 5.28977 5.40434 5.42318 5.55779 5.61505 5.66958 5.87556 6.02129 6.12601 6.39232 6.40372 6.77631 6.88740 6.99794 7.25725 7.56796 7.64226 7.76445 7.90882 8.25354 8.37136 8.92188 8.97692 9.53874 11.03603 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.045989 B = 0.002654 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.690532 B =10546.356631 C =10869.275130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.622 5.622 3 C 0.071 3.929 4 C 0.528 3.472 5 O -0.532 6.532 6 C -0.131 4.131 7 H 0.108 0.892 8 C -0.112 4.112 9 C 0.099 3.901 10 N -0.642 5.642 11 C 0.718 3.282 12 O -0.594 6.594 13 N -0.734 5.734 14 C 0.140 3.860 15 C 0.014 3.986 16 C -0.521 4.521 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C 0.146 3.854 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.394 0.606 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.262 0.738 41 H 0.082 0.918 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.861 8.315 7.668 25.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.356 5.356 3 C -0.072 4.072 4 C 0.316 3.684 5 O -0.408 6.408 6 C -0.153 4.153 7 H 0.126 0.874 8 C -0.150 4.150 9 C -0.024 4.024 10 N -0.382 5.382 11 C 0.420 3.580 12 O -0.473 6.473 13 N -0.388 5.388 14 C 0.017 3.983 15 C -0.024 4.024 16 C -0.560 4.560 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.725 3.275 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.201 1.201 24 C 0.022 3.978 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.227 0.773 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.987 8.169 6.897 25.351 hybrid contribution 0.880 -0.056 -0.011 0.882 sum -22.107 8.113 6.886 24.535 Atomic orbital electron populations 1.21646 0.78974 1.03376 1.01892 1.47743 1.07271 1.06508 1.74107 1.21967 0.97908 0.85062 1.02304 1.20291 0.89314 0.83196 0.75630 1.90703 1.70066 1.31200 1.48855 1.22595 0.91658 1.01559 0.99449 0.87405 1.22582 0.95143 0.96590 1.00675 1.22021 0.97417 0.96261 0.86705 1.47518 1.09881 1.53567 1.27253 1.15546 0.79510 0.80704 0.82242 1.90893 1.84055 1.44885 1.27476 1.45545 1.09905 1.52985 1.30333 1.21622 0.82882 1.00674 0.93126 1.19318 0.90969 0.95300 0.96810 1.21011 0.94657 1.30568 1.09739 0.92255 1.24996 0.99019 0.94998 0.95294 1.69950 1.26877 1.31857 1.24670 0.86562 0.81942 0.78309 0.80651 1.20111 1.21271 1.20108 1.21749 0.82644 0.99705 0.93721 0.92683 0.91133 0.90330 0.89748 0.91364 0.91924 0.89559 0.88763 0.90944 0.91148 0.77297 0.92708 0.92717 0.95965 0.95977 0.92807 0.89920 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.53 10.52 59.84 0.63 1.16 16 2 N -0.62 -4.83 3.27 -189.52 -0.62 -5.45 16 3 C 0.07 0.35 10.43 59.85 0.62 0.97 16 4 C 0.53 5.39 6.83 -10.99 -0.08 5.31 16 5 O -0.53 -7.26 15.42 5.55 0.09 -7.17 16 6 C -0.13 -1.17 2.42 -89.62 -0.22 -1.39 16 7 H 0.11 0.76 6.45 -51.93 -0.33 0.42 16 8 C -0.11 -1.00 6.31 -24.89 -0.16 -1.15 16 9 C 0.10 1.04 6.15 -3.06 -0.02 1.02 16 10 N -0.64 -8.93 3.33 -176.22 -0.59 -9.52 16 11 C 0.72 13.17 8.49 -86.92 -0.74 12.43 16 12 O -0.59 -13.11 16.60 5.29 0.09 -13.02 16 13 N -0.73 -13.49 5.52 -65.23 -0.36 -13.85 16 14 C 0.14 3.04 5.61 -4.04 -0.02 3.02 16 15 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 16 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 17 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 20 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 C 0.15 1.72 6.30 -2.52 -0.02 1.70 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.07 0.30 8.07 -51.93 -0.42 -0.12 16 27 H 0.08 0.62 7.36 -51.93 -0.38 0.24 16 28 H 0.08 0.42 5.35 -51.93 -0.28 0.14 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.97 7.21 -51.93 -0.37 0.59 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.39 6.33 7.46 -40.82 -0.30 6.03 16 36 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.05 1.25 8.14 -51.92 -0.42 0.82 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.02 0.57 8.14 -51.92 -0.42 0.15 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 41 H 0.08 0.97 7.87 -51.93 -0.41 0.56 16 42 H 0.07 0.88 8.03 -51.93 -0.42 0.47 16 LS Contribution 346.28 15.07 5.22 5.22 Total: -1.00 -34.96 346.28 -7.69 -42.65 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -6.69 Total: 0.15 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: -0.54 Total: 10.00 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.83 Total: -54.25 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: 0.17 Total: -20.19 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.96 -7.69 -42.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001681527321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.444 kcal (2) G-P(sol) polarization free energy of solvation -34.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds