Wall clock time and date at job start Tue Mar 31 2020 06:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 120.00021 * 2 1 4 4 C 1.34774 * 119.99837 * 179.97438 * 2 1 3 5 5 O 1.21285 * 119.99868 * 5.39448 * 4 2 1 6 6 C 1.50702 * 119.99976 * 185.38781 * 4 2 1 7 7 H 1.09000 * 110.91463 * 29.21838 * 6 4 2 8 8 C 1.55160 * 111.00148 * 153.11908 * 6 4 2 9 9 C 1.54334 * 103.01853 * 153.38504 * 8 6 4 10 10 N 1.47025 * 107.26692 * 338.13833 * 9 8 6 11 11 C 1.34769 * 125.65059 * 178.85751 * 10 9 8 12 12 O 1.21583 * 120.00240 * 179.69061 * 11 10 9 13 13 N 1.34783 * 120.00090 * 359.68497 * 11 10 9 14 14 C 1.46500 * 120.00074 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.46838 * 180.02562 * 14 13 11 16 16 C 1.50701 * 109.46900 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00151 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00059 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99776 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00196 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46975 * 60.00186 * 20 18 16 22 22 H 1.48502 * 109.47314 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47482 * 300.00348 * 20 18 16 24 24 C 1.47428 * 108.70274 * 358.58406 * 10 9 8 25 25 H 1.09005 * 109.47551 * 270.00178 * 1 2 3 26 26 H 1.09003 * 109.47175 * 30.00370 * 1 2 3 27 27 H 1.09000 * 109.47746 * 150.00004 * 1 2 3 28 28 H 1.09006 * 109.46984 * 185.21650 * 3 2 1 29 29 H 1.08997 * 109.46934 * 305.21151 * 3 2 1 30 30 H 1.08995 * 109.47387 * 65.21551 * 3 2 1 31 31 H 1.08998 * 110.71439 * 271.93675 * 8 6 4 32 32 H 1.08995 * 110.72368 * 35.03761 * 8 6 4 33 33 H 1.09001 * 109.98813 * 218.66685 * 9 8 6 34 34 H 1.08998 * 109.78484 * 97.49357 * 9 8 6 35 35 H 0.96997 * 119.99758 * 0.02562 * 13 11 10 36 36 H 1.08994 * 109.47573 * 59.99782 * 14 13 11 37 37 H 1.09008 * 109.46826 * 299.99726 * 14 13 11 38 38 H 1.08994 * 109.47544 * 59.99363 * 15 14 13 39 39 H 1.09008 * 109.46861 * 299.99304 * 15 14 13 40 40 H 0.97006 * 119.99782 * 180.02562 * 19 18 16 41 41 H 1.09003 * 110.36412 * 143.19141 * 24 10 9 42 42 H 1.08998 * 110.37085 * 265.41429 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 0.0005 5 8 1.5363 -2.2152 -0.0978 6 6 3.6408 -1.1701 0.1231 7 1 3.9865 -0.3062 0.6909 8 6 4.1442 -2.4922 0.7603 9 6 5.5742 -2.6277 0.1958 10 7 5.6373 -1.8208 -1.0316 11 6 6.7250 -1.6598 -1.8108 12 8 6.6602 -0.9707 -2.8104 13 7 7.8848 -2.2626 -1.4819 14 6 9.0674 -2.0871 -2.3287 15 6 10.2398 -2.8712 -1.7360 16 6 11.4561 -2.6913 -2.6074 17 1 11.3985 -2.0793 -3.4953 18 6 12.6425 -3.3080 -2.2710 19 7 12.7128 -4.0529 -1.1894 20 14 14.1500 -3.0855 -3.3514 21 1 14.5016 -1.6444 -3.4198 22 1 15.2880 -3.8465 -2.7761 23 1 13.8586 -3.5893 -4.7177 24 6 4.3117 -1.2221 -1.2723 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3634 -0.8899 -0.5138 28 1 3.2655 1.0717 -0.0934 29 1 1.8660 1.8796 -0.8396 30 1 2.0061 1.7988 0.9330 31 1 4.1620 -2.4140 1.8473 32 1 3.5252 -3.3322 0.4455 33 1 5.7861 -3.6716 -0.0356 34 1 6.2949 -2.2534 0.9229 35 1 7.9365 -2.8125 -0.6846 36 1 9.3252 -1.0293 -2.3781 37 1 8.8539 -2.4563 -3.3319 38 1 9.9817 -3.9290 -1.6869 39 1 10.4534 -2.5024 -0.7327 40 1 13.5476 -4.4865 -0.9525 41 1 4.4179 -0.2167 -1.6799 42 1 3.7310 -1.8466 -1.9512 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001681527321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:09 Heat of formation + Delta-G solvation = -86.780563 kcal Electronic energy + Delta-G solvation = -22150.138184 eV Core-core repulsion = 18743.281976 eV Total energy + Delta-G solvation = -3406.856208 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.72390 -40.72896 -38.35422 -36.62502 -36.55443 -34.84135 -33.11676 -31.20614 -30.53951 -28.78119 -27.35712 -26.60931 -24.72521 -23.00498 -22.73400 -21.08016 -20.13907 -19.12233 -18.63153 -18.44461 -17.22961 -17.00974 -16.70656 -16.64671 -16.47568 -15.81181 -15.32946 -15.04543 -14.70084 -14.49157 -14.29840 -14.09750 -14.02543 -13.74128 -13.37611 -13.34404 -13.22385 -12.97770 -12.90924 -12.62551 -12.52742 -12.30469 -12.22095 -11.79462 -11.67622 -11.50901 -11.25299 -10.96094 -10.58901 -10.20138 -9.73293 -9.55806 -8.22662 -6.32942 1.31505 1.43239 1.45594 1.53100 1.59438 2.01384 2.10767 2.42039 3.02744 3.12127 3.30656 3.47390 3.65650 3.96701 4.17447 4.22227 4.29217 4.43409 4.45521 4.51950 4.52850 4.53278 4.69208 4.74774 4.76395 4.86664 4.90168 4.92818 4.96419 5.10554 5.21511 5.30333 5.46043 5.51496 5.59990 5.79946 5.99042 6.18072 6.25245 6.79812 6.94332 7.04275 7.36146 7.50462 8.89067 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.045989 B = 0.002654 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.690532 B =10546.356631 C =10869.275130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.619 5.619 3 C 0.065 3.935 4 C 0.524 3.476 5 O -0.575 6.575 6 C -0.117 4.117 7 H 0.136 0.864 8 C -0.104 4.104 9 C 0.093 3.907 10 N -0.637 5.637 11 C 0.716 3.284 12 O -0.636 6.636 13 N -0.729 5.729 14 C 0.160 3.840 15 C 0.025 3.975 16 C -0.547 4.547 17 H 0.059 0.941 18 C 0.007 3.993 19 N -0.926 5.926 20 Si 0.965 3.035 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.270 1.270 24 C 0.143 3.857 25 H 0.064 0.936 26 H 0.095 0.905 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.406 0.594 36 H 0.047 0.953 37 H 0.042 0.958 38 H 0.007 0.993 39 H 0.010 0.990 40 H 0.266 0.734 41 H 0.083 0.917 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.126 9.541 8.537 26.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.352 5.352 3 C -0.077 4.077 4 C 0.311 3.689 5 O -0.455 6.455 6 C -0.138 4.138 7 H 0.154 0.846 8 C -0.142 4.142 9 C -0.029 4.029 10 N -0.375 5.375 11 C 0.418 3.582 12 O -0.518 6.518 13 N -0.384 5.384 14 C 0.036 3.964 15 C -0.013 4.013 16 C -0.585 4.585 17 H 0.078 0.922 18 C -0.192 4.192 19 N -0.566 5.566 20 Si 0.790 3.210 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.195 1.195 24 C 0.019 3.981 25 H 0.083 0.917 26 H 0.114 0.886 27 H 0.076 0.924 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.133 0.867 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.241 0.759 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.025 0.975 39 H 0.029 0.971 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.301 9.418 7.813 26.319 hybrid contribution 0.860 -0.411 -0.248 0.984 sum -22.441 9.007 7.566 25.337 Atomic orbital electron populations 1.21766 0.78247 1.03610 1.02629 1.47906 1.08015 1.06797 1.72455 1.22184 0.97657 0.83903 1.03965 1.20456 0.89677 0.83326 0.75406 1.90688 1.70859 1.32820 1.51087 1.22535 0.90822 1.02764 0.97724 0.84635 1.22556 0.93464 0.95991 1.02207 1.22286 0.99097 0.95920 0.85558 1.47491 1.09256 1.53294 1.27457 1.15603 0.80140 0.80275 0.82193 1.90858 1.84875 1.46630 1.29426 1.45230 1.09284 1.53478 1.30399 1.21115 0.83119 0.99399 0.92746 1.19116 0.91541 0.94634 0.95959 1.21430 0.96016 1.30813 1.10263 0.92234 1.25869 1.02147 0.94535 0.96619 1.70054 1.27847 1.32545 1.26129 0.85495 0.78061 0.78622 0.78849 1.19236 1.20613 1.19453 1.21836 0.81532 0.99225 0.95475 0.91693 0.88608 0.92389 0.89707 0.90174 0.89865 0.86744 0.90278 0.90799 0.89328 0.75890 0.93455 0.93929 0.97466 0.97138 0.92539 0.89818 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 10.52 127.77 1.34 2.24 16 2 N -0.62 -8.46 3.27 -871.89 -2.85 -11.31 16 3 C 0.06 0.46 10.43 127.77 1.33 1.79 16 4 C 0.52 10.09 6.83 87.66 0.60 10.69 16 5 O -0.58 -15.69 15.42 -3.05 -0.05 -15.74 16 6 C -0.12 -1.88 2.42 -10.14 -0.02 -1.90 16 7 H 0.14 1.46 6.45 -2.39 -0.02 1.44 16 8 C -0.10 -1.65 6.31 31.79 0.20 -1.45 16 9 C 0.09 1.80 6.15 86.73 0.53 2.33 16 10 N -0.64 -17.16 3.33 -829.72 -2.76 -19.92 16 11 C 0.72 26.12 8.49 179.05 1.52 27.64 16 12 O -0.64 -28.29 16.60 -3.98 -0.07 -28.36 16 13 N -0.73 -26.69 5.52 -478.54 -2.64 -29.33 16 14 C 0.16 7.08 5.61 86.38 0.48 7.56 16 15 C 0.03 1.27 5.09 29.85 0.15 1.42 16 16 C -0.55 -30.65 9.11 25.60 0.23 -30.41 16 17 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 18 C 0.01 0.40 5.46 84.65 0.46 0.86 16 19 N -0.93 -54.27 13.29 21.45 0.28 -53.99 16 20 Si 0.97 43.63 29.54 68.60 2.03 45.65 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 24 C 0.14 3.26 6.30 86.86 0.55 3.81 16 25 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 26 H 0.10 0.58 8.07 -2.39 -0.02 0.56 16 27 H 0.06 0.91 7.36 -2.39 -0.02 0.89 16 28 H 0.08 0.61 5.35 -2.38 -0.01 0.59 16 29 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.11 1.22 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.56 7.21 -2.39 -0.02 1.54 16 33 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.41 12.81 7.46 -92.71 -0.69 12.12 16 36 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 38 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 40 H 0.27 14.66 8.31 -92.70 -0.77 13.89 16 41 H 0.08 1.89 7.87 -2.39 -0.02 1.88 16 42 H 0.05 1.41 8.03 -2.39 -0.02 1.39 16 Total: -1.00 -75.97 346.28 1.65 -74.32 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.32 Total: 14.09 kcal Atomic # 6 Polarization: 17.19 SS G_CDS: 7.38 Total: 24.58 kcal Atomic # 7 Polarization: -106.57 SS G_CDS: -7.97 Total: -114.54 kcal Atomic # 8 Polarization: -43.98 SS G_CDS: -0.11 Total: -44.10 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -75.97 1.65 -74.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001681527321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.459 kcal (2) G-P(sol) polarization free energy of solvation -75.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds