Wall clock time and date at job start Tue Mar 31 2020 06:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99891 * 2 1 4 4 H 1.48503 * 109.47353 * 270.00385 * 3 2 1 5 5 H 1.48497 * 109.47102 * 30.00347 * 3 2 1 6 6 H 1.48498 * 109.47027 * 150.00723 * 3 2 1 7 7 C 1.37882 * 120.00051 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99783 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99882 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47000 * 179.97438 * 9 7 2 11 11 C 1.34783 * 119.99967 * 179.97438 * 10 9 7 12 12 O 1.21589 * 119.99791 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00234 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00124 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47052 * 180.02562 * 14 13 11 16 16 H 1.09004 * 109.46700 * 304.99874 * 15 14 13 17 17 C 1.52992 * 109.47226 * 64.99672 * 15 14 13 18 18 C 1.52996 * 109.47231 * 180.02562 * 17 15 14 19 19 C 1.53003 * 109.47288 * 300.00159 * 18 17 15 20 20 H 1.09002 * 109.47375 * 300.00461 * 19 18 17 21 21 C 1.50696 * 109.47365 * 179.97438 * 19 18 17 22 22 N 1.34777 * 120.00076 * 60.00522 * 21 19 18 23 23 O 1.21281 * 120.00074 * 240.00024 * 21 19 18 24 24 C 1.53005 * 109.46671 * 59.99756 * 19 18 17 25 25 C 1.52996 * 109.46984 * 185.00369 * 15 14 13 26 26 H 0.96997 * 120.00364 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.47281 * 59.99534 * 9 7 2 28 28 H 1.09000 * 109.47405 * 299.99797 * 9 7 2 29 29 H 0.96998 * 120.00159 * 359.97438 * 10 9 7 30 30 H 0.97002 * 119.99738 * 0.02562 * 13 11 10 31 31 H 1.08995 * 109.46920 * 60.00277 * 14 13 11 32 32 H 1.08999 * 109.46929 * 299.99929 * 14 13 11 33 33 H 1.08998 * 109.47794 * 300.00368 * 17 15 14 34 34 H 1.09004 * 109.47116 * 60.00457 * 17 15 14 35 35 H 1.09004 * 109.47628 * 180.02562 * 18 17 15 36 36 H 1.08999 * 109.47343 * 59.99910 * 18 17 15 37 37 H 0.97001 * 120.00485 * 180.02562 * 22 21 19 38 38 H 0.97005 * 119.99790 * 359.72082 * 22 21 19 39 39 H 1.08999 * 109.47241 * 60.00689 * 24 19 18 40 40 H 1.09005 * 109.46517 * 179.97438 * 24 19 18 41 41 H 1.08991 * 109.47497 * 59.99645 * 25 15 14 42 42 H 1.09004 * 109.46998 * 299.99323 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 5.3250 -2.8215 -0.0020 12 8 6.1151 -1.8973 -0.0025 13 7 5.7743 -4.0921 -0.0013 14 6 7.2146 -4.3597 -0.0018 15 6 7.4525 -5.8712 -0.0016 16 1 6.9270 -6.3215 0.8406 17 6 6.9290 -6.4701 -1.3085 18 6 7.1663 -7.9815 -1.3080 19 6 8.6651 -8.2625 -1.1825 20 1 9.1909 -7.8124 -2.0246 21 6 8.8988 -9.7512 -1.1814 22 7 8.5157 -10.4943 -2.2385 23 8 9.4316 -10.2807 -0.2292 24 6 9.1885 -7.6635 0.1245 25 6 8.9513 -6.1515 0.1237 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6803 0.8888 28 1 3.8746 -0.6800 -0.8911 29 1 3.3696 -3.3125 -0.0002 30 1 5.1440 -4.8294 -0.0006 31 1 7.6661 -3.9204 0.8876 32 1 7.6653 -3.9215 -0.8923 33 1 5.8612 -6.2704 -1.3978 34 1 7.4545 -6.0198 -2.1507 35 1 6.7938 -8.4082 -2.2393 36 1 6.6406 -8.4316 -0.4659 37 1 8.6657 -11.4527 -2.2377 38 1 8.0859 -10.0714 -2.9984 39 1 8.6628 -8.1136 0.9666 40 1 10.2562 -7.8641 0.2141 41 1 9.3242 -5.7249 1.0547 42 1 9.4768 -5.7012 -0.7185 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001682122075.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:10 Heat of formation + Delta-G solvation = -103.008799 kcal Electronic energy + Delta-G solvation = -21914.324971 eV Core-core repulsion = 18506.765054 eV Total energy + Delta-G solvation = -3407.559917 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.52136 -39.39022 -38.11466 -34.83090 -34.16231 -33.97327 -32.36745 -31.37000 -31.00097 -27.98173 -26.01755 -23.08415 -22.91602 -21.81644 -20.60749 -20.32183 -19.94560 -18.20777 -17.87041 -16.99835 -16.35898 -15.92104 -15.81126 -15.09118 -14.87238 -14.49719 -14.36946 -14.28806 -13.99701 -13.72441 -13.17406 -13.06278 -12.64862 -12.57036 -12.34149 -12.32065 -11.95349 -11.52331 -11.38466 -11.01791 -10.90122 -10.76803 -10.71901 -10.42904 -10.12577 -10.07430 -9.94728 -9.56906 -9.43599 -8.82612 -8.72485 -7.97900 -6.19401 -4.21096 2.26380 3.12928 3.27349 3.30797 3.37853 3.45239 3.84730 4.22030 4.26958 4.34821 4.35944 4.73326 4.74348 4.82161 4.96444 5.05612 5.08614 5.13356 5.16320 5.18460 5.46965 5.53172 5.60773 5.67633 5.78765 5.81435 5.91129 5.93635 6.03871 6.18896 6.35999 6.76797 6.81901 6.90564 7.14144 7.27311 7.43696 7.60448 7.87155 8.30452 8.71621 8.84139 9.24550 9.42732 10.92589 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.040826 B = 0.002584 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.678822 B =10832.273425 C =11282.337117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.238 3.762 10 N -0.724 5.724 11 C 0.694 3.306 12 O -0.605 6.605 13 N -0.755 5.755 14 C 0.146 3.854 15 C -0.101 4.101 16 H 0.078 0.922 17 C -0.114 4.114 18 C -0.109 4.109 19 C -0.109 4.109 20 H 0.099 0.901 21 C 0.520 3.480 22 N -0.858 5.858 23 O -0.544 6.544 24 C -0.098 4.098 25 C -0.112 4.112 26 H 0.267 0.733 27 H 0.023 0.977 28 H 0.018 0.982 29 H 0.392 0.608 30 H 0.392 0.608 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.400 0.600 38 H 0.402 0.598 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.547 -19.996 -5.198 26.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.127 4.127 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.097 0.903 9 C 0.116 3.884 10 N -0.376 5.376 11 C 0.393 3.607 12 O -0.485 6.485 13 N -0.412 5.412 14 C 0.021 3.979 15 C -0.120 4.120 16 H 0.097 0.903 17 C -0.151 4.151 18 C -0.147 4.147 19 C -0.130 4.130 20 H 0.117 0.883 21 C 0.306 3.694 22 N -0.421 5.421 23 O -0.420 6.420 24 C -0.136 4.136 25 C -0.150 4.150 26 H 0.077 0.923 27 H 0.040 0.960 28 H 0.036 0.964 29 H 0.225 0.775 30 H 0.225 0.775 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.230 0.770 38 H 0.230 0.770 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 17.454 -19.127 -4.492 26.280 hybrid contribution -0.505 -0.066 -0.513 0.723 sum 16.949 -19.193 -5.005 26.090 Atomic orbital electron populations 1.69880 1.06211 1.27397 1.49642 1.24789 0.94791 0.99183 0.93920 0.86806 0.80617 0.83172 0.79042 1.19870 1.20960 1.18420 1.21099 0.88600 0.95159 1.53094 0.90330 1.19345 0.94767 0.77735 0.96601 1.45391 1.03770 1.10984 1.77460 1.16134 0.83505 0.82777 0.78253 1.90862 1.55436 1.43283 1.58878 1.45134 1.07527 1.06458 1.82115 1.21112 0.80819 0.93893 1.02094 1.21447 0.96970 0.94911 0.98627 0.90316 1.21602 1.01814 0.93993 0.97729 1.21543 0.93293 0.97426 1.02457 1.21406 0.98751 0.91266 1.01583 0.88313 1.20797 0.76826 0.89964 0.81858 1.43942 1.64671 1.12126 1.21369 1.90748 1.42634 1.74135 1.34517 1.21348 1.01718 0.94725 0.95797 1.21532 0.95008 0.95575 1.02845 0.92297 0.95959 0.96409 0.77532 0.77467 0.91916 0.91950 0.91079 0.91270 0.91475 0.91193 0.76999 0.76990 0.91056 0.91116 0.90996 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.96 55.43 0.77 -25.82 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.54 -14.93 9.83 -34.44 -0.34 -15.27 16 8 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 9 C 0.24 5.96 4.50 -5.20 -0.02 5.94 16 10 N -0.72 -14.90 5.55 -66.41 -0.37 -15.27 16 11 C 0.69 13.62 8.57 -86.92 -0.74 12.87 16 12 O -0.60 -14.42 16.34 5.29 0.09 -14.33 16 13 N -0.75 -10.38 5.29 -65.22 -0.34 -10.72 16 14 C 0.15 1.69 5.06 -4.04 -0.02 1.67 16 15 C -0.10 -0.80 2.22 -90.62 -0.20 -1.00 16 16 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 17 C -0.11 -0.77 5.08 -26.74 -0.14 -0.90 16 18 C -0.11 -0.61 5.10 -26.73 -0.14 -0.75 16 19 C -0.11 -0.68 2.53 -91.77 -0.23 -0.92 16 20 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 21 C 0.52 4.17 7.43 -10.99 -0.08 4.09 16 22 N -0.86 -3.79 8.77 31.22 0.27 -3.51 16 23 O -0.54 -6.81 16.82 5.56 0.09 -6.71 16 24 C -0.10 -0.74 4.49 -26.70 -0.12 -0.86 16 25 C -0.11 -0.80 5.21 -26.71 -0.14 -0.94 16 26 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 28 H 0.02 0.47 7.57 -51.93 -0.39 0.07 16 29 H 0.39 7.02 8.34 -40.82 -0.34 6.68 16 30 H 0.39 4.27 7.67 -40.82 -0.31 3.95 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.51 7.18 -51.93 -0.37 0.13 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.27 7.56 -51.93 -0.39 -0.13 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.40 1.51 8.93 -40.82 -0.36 1.14 16 38 H 0.40 0.71 8.24 -40.82 -0.34 0.37 16 39 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 40 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 340.59 15.07 5.13 5.13 Total: -1.00 -36.04 340.59 -7.98 -44.02 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -6.69 Total: 4.29 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -2.27 Total: 6.00 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: 0.33 Total: -55.33 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: 0.18 Total: -21.05 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -36.04 -7.98 -44.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001682122075.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.990 kcal (2) G-P(sol) polarization free energy of solvation -36.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds