Wall clock time and date at job start Tue Mar 31 2020 06:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34775 * 119.99646 * 2 1 4 4 O 1.21284 * 120.00246 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99507 * 180.02562 * 3 2 1 6 6 C 1.53012 * 109.47055 * 180.02562 * 5 3 2 7 7 H 1.09004 * 109.46727 * 305.00353 * 6 5 3 8 8 C 1.52998 * 109.47166 * 184.99858 * 6 5 3 9 9 N 1.46502 * 109.46929 * 65.00016 * 6 5 3 10 10 C 1.34778 * 120.00129 * 205.00221 * 9 6 5 11 11 O 1.21588 * 119.99550 * 0.02562 * 10 9 6 12 12 N 1.34772 * 120.00312 * 179.97438 * 10 9 6 13 13 C 1.46495 * 120.00087 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47268 * 178.28954 * 13 12 10 15 15 C 1.50693 * 115.54996 * 65.14332 * 14 13 12 16 16 H 1.08009 * 119.99911 * 265.40668 * 15 14 13 17 17 C 1.37879 * 120.00331 * 85.40504 * 15 14 13 18 18 N 1.31518 * 119.99658 * 353.55688 * 17 15 14 19 19 Si 1.86802 * 120.00341 * 173.55597 * 17 15 14 20 20 H 1.48496 * 109.47131 * 90.00251 * 19 17 15 21 21 H 1.48502 * 109.46923 * 210.00478 * 19 17 15 22 22 H 1.48503 * 109.46896 * 330.00071 * 19 17 15 23 23 C 1.53000 * 117.49804 * 279.47311 * 14 13 12 24 24 C 1.52997 * 117.50104 * 210.81687 * 14 13 12 25 25 H 1.09003 * 109.47107 * 299.71925 * 1 2 3 26 26 H 1.08996 * 109.47319 * 59.72160 * 1 2 3 27 27 H 1.09002 * 109.46890 * 179.71874 * 1 2 3 28 28 H 0.96996 * 120.00102 * 180.28486 * 2 1 3 29 29 H 1.09001 * 109.47363 * 300.00121 * 5 3 2 30 30 H 1.08995 * 109.47725 * 60.00828 * 5 3 2 31 31 H 1.08996 * 109.47240 * 300.00363 * 8 6 5 32 32 H 1.09004 * 109.47023 * 60.00470 * 8 6 5 33 33 H 1.08999 * 109.47103 * 179.97438 * 8 6 5 34 34 H 0.96999 * 120.00167 * 24.99818 * 9 6 5 35 35 H 0.97000 * 119.99475 * 0.02562 * 12 10 9 36 36 H 1.09002 * 109.47451 * 298.29391 * 13 12 10 37 37 H 1.09004 * 109.47263 * 58.29197 * 13 12 10 38 38 H 0.97001 * 120.00014 * 185.06644 * 18 17 15 39 39 H 1.09001 * 117.50284 * 0.02562 * 23 14 13 40 40 H 1.09001 * 117.49680 * 145.01699 * 23 14 13 41 41 H 1.09000 * 117.49980 * 214.97942 * 24 14 13 42 42 H 1.09002 * 117.50089 * 359.97278 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2176 0.0005 5 6 3.6458 1.1672 -0.0006 6 6 4.1559 2.6098 0.0002 7 1 3.7209 3.1494 -0.8411 8 6 5.6807 2.6117 -0.1261 9 7 3.7688 3.2639 1.2526 10 6 3.6419 4.6048 1.3014 11 8 3.8483 5.2715 0.3058 12 7 3.2853 5.2065 2.4534 13 6 3.1480 6.6641 2.5065 14 6 2.6962 7.0831 3.9069 15 6 3.6801 6.8116 5.0156 16 1 3.6061 5.9014 5.5924 17 6 4.6747 7.7251 5.2937 18 7 4.8445 8.7702 4.5136 19 14 5.7811 7.4782 6.7785 20 1 6.9686 6.6790 6.3835 21 1 6.2223 8.7999 7.2922 22 1 5.0316 6.7596 7.8402 23 6 1.2076 6.9559 4.2365 24 6 1.8292 8.3383 4.0235 25 1 -0.3633 0.5095 0.8925 26 1 -0.3634 0.5181 -0.8874 27 1 -0.3633 -1.0277 -0.0050 28 1 1.9500 -0.8400 -0.0042 29 1 4.0096 0.6531 0.8891 30 1 4.0089 0.6537 -0.8908 31 1 6.1156 2.0721 0.7151 32 1 5.9687 2.1250 -1.0580 33 1 6.0439 3.6394 -0.1260 34 1 3.6037 2.7320 2.0468 35 1 3.1203 4.6745 3.2475 36 1 4.1081 7.1280 2.2804 37 1 2.4075 6.9862 1.7743 38 1 5.5892 9.3730 4.6656 39 1 0.5501 6.5732 3.4559 40 1 0.9399 6.6761 5.2554 41 1 1.9702 8.9675 4.9023 42 1 1.5810 8.8659 3.1025 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001682168849.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:17 Heat of formation + Delta-G solvation = -50.058979 kcal Electronic energy + Delta-G solvation = -22696.645330 eV Core-core repulsion = 19291.381489 eV Total energy + Delta-G solvation = -3405.263841 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.06942 -39.00547 -36.77867 -35.48572 -34.65057 -33.07794 -31.91018 -31.05778 -28.80850 -26.22443 -25.98254 -24.95552 -21.75168 -21.08926 -20.48865 -20.05804 -19.27343 -17.78185 -17.31736 -16.44193 -15.90807 -15.83925 -15.17307 -14.72445 -14.55090 -14.16192 -14.03914 -13.68743 -13.46270 -13.15733 -12.84499 -12.56895 -12.50924 -12.38861 -12.07222 -11.82045 -11.59237 -11.47234 -10.96159 -10.93550 -10.84708 -10.47770 -10.18275 -9.95007 -9.58114 -9.37054 -9.32842 -8.87254 -8.63893 -8.42421 -8.15225 -7.80218 -6.01075 -4.09220 2.54382 3.00812 3.28984 3.36582 3.38272 3.39497 4.04237 4.40022 4.53781 4.62870 4.90653 4.96674 5.10461 5.26618 5.27075 5.28974 5.44983 5.50121 5.54095 5.59496 5.76064 6.11588 6.15031 6.19241 6.35483 6.45056 6.58153 6.73463 6.80059 6.98005 7.01159 7.17595 7.24745 7.47974 7.55018 7.58231 7.76608 7.87664 8.10828 8.42447 8.86031 8.91947 9.43756 9.56710 11.06812 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.019350 B = 0.004036 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.672729 B = 6935.674928 C = 7425.850948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.743 5.743 3 C 0.503 3.497 4 O -0.514 6.514 5 C -0.150 4.150 6 C 0.178 3.822 7 H 0.093 0.907 8 C -0.164 4.164 9 N -0.740 5.740 10 C 0.706 3.294 11 O -0.605 6.605 12 N -0.722 5.722 13 C 0.184 3.816 14 C 0.028 3.972 15 C -0.498 4.498 16 H 0.058 0.942 17 C 0.074 3.926 18 N -0.874 5.874 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.211 4.211 24 C -0.148 4.148 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.399 0.601 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.388 0.612 35 H 0.393 0.607 36 H 0.068 0.932 37 H 0.033 0.967 38 H 0.261 0.739 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.179 -20.152 -7.531 21.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.396 5.396 3 C 0.289 3.711 4 O -0.387 6.387 5 C -0.190 4.190 6 C 0.072 3.928 7 H 0.111 0.889 8 C -0.223 4.223 9 N -0.396 5.396 10 C 0.406 3.594 11 O -0.485 6.485 12 N -0.374 5.374 13 C 0.060 3.940 14 C 0.028 3.972 15 C -0.535 4.535 16 H 0.077 0.923 17 C -0.130 4.130 18 N -0.510 5.510 19 Si 0.717 3.283 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.248 4.248 24 C -0.186 4.186 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.232 0.768 29 H 0.116 0.884 30 H 0.124 0.876 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.221 0.779 35 H 0.226 0.774 36 H 0.086 0.914 37 H 0.051 0.949 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.383 -18.476 -8.435 20.590 hybrid contribution 0.701 -1.071 1.566 2.022 sum -2.682 -19.547 -6.869 20.892 Atomic orbital electron populations 1.21504 0.79819 1.01883 1.02457 1.45861 1.07708 1.08728 1.77335 1.20779 0.90378 0.83664 0.76292 1.90829 1.70112 1.30872 1.46915 1.22075 0.92167 0.99697 1.05102 1.20364 0.94026 0.89805 0.88628 0.88903 1.22228 0.95377 1.03408 1.01268 1.44945 1.76239 1.05835 1.12569 1.15915 0.77959 0.81365 0.84157 1.90841 1.58886 1.63785 1.34940 1.45080 1.72683 1.09156 1.10463 1.20795 1.00411 0.76753 0.96029 1.19045 0.87754 0.97734 0.92711 1.20323 1.13066 1.04930 1.15223 0.92340 1.24984 0.97198 0.94689 0.96171 1.69986 1.29329 1.14113 1.37580 0.86643 0.80830 0.77459 0.83357 1.20741 1.21205 1.19898 1.23010 0.98907 1.02725 1.00172 1.22481 1.04909 0.90349 1.00862 0.92207 0.92347 0.90929 0.76759 0.88416 0.87596 0.92595 0.92076 0.91237 0.77933 0.77357 0.91368 0.94874 0.92916 0.91616 0.90501 0.89888 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 10.70 59.85 0.64 1.29 16 2 N -0.74 -5.57 5.71 -67.07 -0.38 -5.96 16 3 C 0.50 5.57 7.69 -10.99 -0.08 5.49 16 4 O -0.51 -8.56 15.35 5.55 0.09 -8.48 16 5 C -0.15 -1.24 5.24 -27.88 -0.15 -1.39 16 6 C 0.18 2.32 2.14 -67.92 -0.15 2.18 16 7 H 0.09 1.52 7.39 -51.93 -0.38 1.13 16 8 C -0.16 -1.89 9.48 37.16 0.35 -1.54 16 9 N -0.74 -11.59 4.22 -58.67 -0.25 -11.84 16 10 C 0.71 14.84 8.53 -86.92 -0.74 14.10 16 11 O -0.60 -15.06 16.01 5.29 0.08 -14.97 16 12 N -0.72 -15.44 5.48 -65.23 -0.36 -15.80 16 13 C 0.18 4.51 5.50 -4.05 -0.02 4.49 16 14 C 0.03 0.70 1.38 -155.67 -0.21 0.48 16 15 C -0.50 -13.18 8.63 -34.44 -0.30 -13.48 16 16 H 0.06 1.52 7.82 -52.48 -0.41 1.11 16 17 C 0.07 2.00 5.39 -17.82 -0.10 1.90 16 18 N -0.87 -24.87 12.91 55.43 0.72 -24.15 16 19 Si 0.89 20.90 29.55 -169.99 -5.02 15.88 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 C -0.21 -4.65 9.96 -26.70 -0.27 -4.92 16 24 C -0.15 -3.54 9.42 -26.70 -0.25 -3.79 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.40 1.57 8.83 -40.82 -0.36 1.21 16 29 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.39 5.12 8.62 -40.82 -0.35 4.77 16 35 H 0.39 7.69 8.38 -40.82 -0.34 7.35 16 36 H 0.07 1.89 8.14 -51.93 -0.42 1.47 16 37 H 0.03 0.82 8.09 -51.93 -0.42 0.40 16 38 H 0.26 7.13 8.32 -40.82 -0.34 6.79 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 40 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 41 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16 42 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 357.91 15.07 5.39 5.39 Total: -1.00 -35.29 357.91 -7.90 -43.19 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -6.90 Total: 11.92 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -1.27 Total: 4.81 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: -0.27 Total: -57.74 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: 0.17 Total: -23.45 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.29 -7.90 -43.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001682168849.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.870 kcal (2) G-P(sol) polarization free energy of solvation -35.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds